Strain Fitness in Sphingobium sp. HT1-2 around GFF1929

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,951,769	+		GFF1926	0.72	-0.3
1,951,775	+		GFF1926	0.72	-0.6
1,951,783	-		GFF1926	0.73	+0.0
1,951,783	-		GFF1926	0.73	-0.1
1,951,783	-		GFF1926	0.73	-0.1
1,951,783	-		GFF1926	0.73	-0.1
1,951,783	-		GFF1926	0.73	+0.5
1,951,785	+		GFF1926	0.73	-0.5
1,951,787	-		GFF1926	0.73	+0.1
1,951,801	-		GFF1926	0.74	-0.1
1,951,818	+		GFF1926	0.75	-0.1
1,951,821	-		GFF1926	0.76	-0.9
1,951,826	-		GFF1926	0.76	-0.1
1,951,826	-		GFF1926	0.76	+0.3
1,951,826	-		GFF1926	0.76	-2.6
1,951,828	+		GFF1926	0.76	-2.2
1,951,832	+		GFF1926	0.76	+0.6
1,951,832	+		GFF1926	0.76	-0.6
1,951,833	+		GFF1926	0.76	+0.1
1,951,836	-		GFF1926	0.77	+0.1
1,951,836	-		GFF1926	0.77	-2.2
1,951,836	-		GFF1926	0.77	+1.0
1,951,836	-		GFF1926	0.77	+0.3
1,951,840	-		GFF1926	0.77	+1.4
1,951,840	-		GFF1926	0.77	-1.0
1,951,840	-		GFF1926	0.77	+0.6
1,951,840	-		GFF1926	0.77	+0.4
1,951,840	-		GFF1926	0.77	+0.3
1,951,846	-		GFF1926	0.77	+0.2
1,951,862	+		GFF1926	0.79	-0.3
1,951,862	+		GFF1926	0.79	-2.0
1,951,870	-		GFF1926	0.79	+1.1
1,951,870	-		GFF1926	0.79	+1.9
1,951,872	+		GFF1926	0.79	-0.8
1,951,875	-		GFF1926	0.80	-0.5
1,951,882	-		GFF1926	0.80	-0.2
1,951,909	+		GFF1926	0.82	-1.7
1,951,929	-		GFF1926	0.84	-0.3
1,951,930	-		GFF1926	0.84	-0.8
1,951,931	-		GFF1926	0.84	+0.3
1,951,940	+		GFF1926	0.84	-0.2
1,951,943	-		GFF1926	0.85	+1.7
1,951,945	+		GFF1926	0.85	-2.3
1,951,945	+		GFF1926	0.85	-1.9
1,951,953	-		GFF1926	0.85	-0.2
1,951,953	-		GFF1926	0.85	-0.2
1,951,957	+		GFF1926	0.86	-0.9
1,951,963	-		GFF1926	0.86	-0.6
1,951,976	+		GFF1926	0.87	-0.3
1,951,976	+		GFF1926	0.87	-0.4
1,951,976	+		GFF1926	0.87	-0.4
1,951,994	-		GFF1926	0.88	-0.2
1,952,001	+		GFF1926	0.89	-0.6
1,952,038	-				-1.8
1,952,038	-				-1.4
1,952,038	-				+0.4
1,952,040	+				-2.2
1,952,045	-				-0.7
1,952,048	-				-0.4
1,952,048	-				+0.9
1,952,048	-				-2.2
1,952,078	+				-0.2
1,952,086	-				-0.8
1,952,089	-				-0.7
1,952,098	+				+0.7
1,952,152	+				+0.9
1,952,152	+				-1.6
1,952,163	+				+0.1
1,952,167	-				+0.7
1,952,168	+				-0.5
1,952,168	+				+0.6
1,952,176	-				-0.6
1,952,176	-				+0.1
1,952,234	-		GFF1927	0.37	-0.3
1,952,256	+		GFF1927	0.48	-0.1
1,952,293	+		GFF1927	0.65	+0.2
1,952,301	-		GFF1927	0.69	+0.1
1,952,379	+				-0.3
1,952,403	-				-0.1
1,952,406	+				+0.7
1,952,406	+				-0.9
1,952,414	-				-0.1
1,952,421	-				+0.8
1,952,459	-				+1.1
1,952,475	+		GFF1928	0.11	-1.0
1,952,476	+		GFF1928	0.11	-0.3
1,952,476	+		GFF1928	0.11	-1.5
1,952,479	-		GFF1928	0.12	-0.1
1,952,481	+		GFF1928	0.13	+0.9
1,952,484	-		GFF1928	0.14	+1.6
1,952,516	+		GFF1928	0.26	+1.0
1,952,517	+		GFF1928	0.26	+0.2
1,952,517	+		GFF1928	0.26	-0.3
1,952,517	+		GFF1928	0.26	+0.2
1,952,520	-		GFF1928	0.27	+0.3
1,952,523	+		GFF1928	0.29	+0.2
1,952,525	-		GFF1928	0.29	-0.4
1,952,525	-		GFF1928	0.29	-2.7
1,952,525	-		GFF1928	0.29	-0.5
1,952,542	-		GFF1928	0.36	-0.5
1,952,545	+		GFF1928	0.37	+0.4
1,952,567	+		GFF1928	0.45	-0.4
1,952,567	+		GFF1928	0.45	-1.1
1,952,567	+		GFF1928	0.45	+0.5
1,952,567	+		GFF1928	0.45	-0.4
1,952,567	+		GFF1928	0.45	-0.7
1,952,567	+		GFF1928	0.45	+0.4
1,952,572	+		GFF1928	0.47	-1.1
1,952,572	+		GFF1928	0.47	-1.8
1,952,575	-		GFF1928	0.48	-1.2
1,952,575	-		GFF1928	0.48	-0.5
1,952,577	+		GFF1928	0.49	+0.7
1,952,585	-		GFF1928	0.51	-0.0
1,952,585	-		GFF1928	0.51	+0.6
1,952,585	-		GFF1928	0.51	-0.6
1,952,590	-		GFF1928	0.53	+0.2
1,952,604	-		GFF1928	0.59	+0.2
1,952,609	-		GFF1928	0.60	-0.3
1,952,627	+		GFF1928	0.67	-0.5
1,952,642	+		GFF1928	0.73	+1.3
1,952,642	+		GFF1928	0.73	+0.3
1,952,687	+		GFF1928	0.89	+0.5
1,952,687	+		GFF1928	0.89	-1.0
1,952,690	-				-1.5
1,952,692	+				-0.9
1,952,692	+				-0.9
1,952,692	+				+0.4
1,952,692	+				-0.5
1,952,692	+				-1.2
1,952,692	+				+0.0
1,952,695	-				+1.2
1,952,697	+				+0.5
1,952,700	-				-0.3
1,952,700	-				+0.3
1,952,700	-				-0.4
1,952,700	-				-0.7
1,952,700	-				-1.3
1,952,700	-				+1.0
1,952,700	-				+0.4
1,952,700	-				+1.4
1,952,705	-				+0.3
1,952,714	+				+0.1
1,952,714	+				-2.1
1,952,722	-				+0.0
1,952,724	-				+0.4
1,952,756	+				+1.0
1,952,770	-				-0.2
1,952,787	+				+0.2
1,952,787	+				+0.1
1,952,795	-				-0.4
1,952,795	-				-0.4
1,952,795	-				-0.8
1,952,801	+				-0.4
1,952,809	-				+1.0
1,952,817	-				-1.6
1,952,826	+				-0.5
1,952,834	-				+0.1
1,952,836	+				-1.3
1,952,845	+				+1.5
1,952,845	+				-0.4
1,952,853	-				-0.7
1,952,877	-		GFF1929	0.12	+1.3
1,952,882	+		GFF1929	0.12	+1.0
1,952,916	+		GFF1929	0.16	+0.6
1,952,924	-		GFF1929	0.16	-1.1
1,952,935	+		GFF1929	0.17	-2.1
1,952,943	-		GFF1929	0.18	+0.2
1,952,943	-		GFF1929	0.18	-0.0
1,952,943	-		GFF1929	0.18	-1.6
1,952,943	-		GFF1929	0.18	-2.3
1,952,943	-		GFF1929	0.18	-1.1
1,952,949	+		GFF1929	0.19	-0.1
1,952,967	+		GFF1929	0.20	-0.3
1,952,975	+		GFF1929	0.21	-0.9
1,952,977	+		GFF1929	0.21	+1.3
1,952,986	+		GFF1929	0.22	+1.6
1,952,994	-		GFF1929	0.23	-0.4
1,952,994	-		GFF1929	0.23	+0.8
1,952,994	-		GFF1929	0.23	+0.8
1,953,006	+		GFF1929	0.24	-1.1
1,953,014	+		GFF1929	0.24	-3.4
1,953,014	-		GFF1929	0.24	-0.4
1,953,014	-		GFF1929	0.24	+0.5
1,953,031	+		GFF1929	0.26	+1.2
1,953,052	+		GFF1929	0.28	-0.6
1,953,057	+		GFF1929	0.28	+0.5
1,953,060	-		GFF1929	0.29	-0.1
1,953,062	+		GFF1929	0.29	-0.6
1,953,065	-		GFF1929	0.29	-1.4
1,953,067	+		GFF1929	0.29	-1.5
1,953,067	+		GFF1929	0.29	-0.6
1,953,067	+		GFF1929	0.29	-0.5
1,953,067	+		GFF1929	0.29	-1.6
1,953,070	-		GFF1929	0.30	-0.6
1,953,075	-		GFF1929	0.30	+1.2
1,953,075	-		GFF1929	0.30	-2.6
1,953,083	+		GFF1929	0.31	-0.5
1,953,091	-		GFF1929	0.31	-0.1
1,953,096	-		GFF1929	0.32	+1.6
1,953,104	+		GFF1929	0.33	-0.3
1,953,119	+		GFF1929	0.34	-1.1
1,953,136	+		GFF1929	0.36	-0.2
1,953,136	+		GFF1929	0.36	+0.0
1,953,173	+		GFF1929	0.39	+0.4
1,953,192	-		GFF1929	0.41	+0.6
1,953,192	-		GFF1929	0.41	-0.8
1,953,195	+		GFF1929	0.41	-0.4
1,953,198	-		GFF1929	0.41	+0.6
1,953,198	-		GFF1929	0.41	-1.6
1,953,213	+		GFF1929	0.42	-0.1
1,953,213	+		GFF1929	0.42	+0.9
1,953,225	+		GFF1929	0.44	-0.3
1,953,233	+		GFF1929	0.44	-0.5
1,953,241	-		GFF1929	0.45	+0.4
1,953,273	+		GFF1929	0.48	+0.3
1,953,297	-		GFF1929	0.50	-1.5
1,953,302	+		GFF1929	0.51	-0.9
1,953,302	+		GFF1929	0.51	-0.3
1,953,302	+		GFF1929	0.51	-1.0
1,953,310	-		GFF1929	0.51	-0.3
1,953,310	-		GFF1929	0.51	-2.0
1,953,326	+		GFF1929	0.53	-0.4
1,953,340	+		GFF1929	0.54	+0.3
1,953,353	-		GFF1929	0.55	-0.1
1,953,355	-		GFF1929	0.55	-1.1
1,953,391	+		GFF1929	0.59	-0.9
1,953,399	-		GFF1929	0.59	-1.9
1,953,414	-		GFF1929	0.61	-1.0
1,953,425	-		GFF1929	0.62	-0.0
1,953,426	+		GFF1929	0.62	+0.5
1,953,426	+		GFF1929	0.62	-0.7
1,953,428	+		GFF1929	0.62	-0.8
1,953,436	-		GFF1929	0.63	+0.4
1,953,441	-		GFF1929	0.63	-1.7
1,953,445	+		GFF1929	0.63	-2.2
1,953,445	+		GFF1929	0.63	-1.4
1,953,450	+		GFF1929	0.64	-1.8
1,953,450	+		GFF1929	0.64	-1.2
1,953,453	-		GFF1929	0.64	-0.4
1,953,453	-		GFF1929	0.64	-0.2
1,953,453	-		GFF1929	0.64	+0.5
1,953,464	+		GFF1929	0.65	-0.7
1,953,490	-		GFF1929	0.68	+0.7
1,953,506	-		GFF1929	0.69	-0.0
1,953,544	+		GFF1929	0.72	-0.7
1,953,567	+		GFF1929	0.75	-0.8
1,953,579	+		GFF1929	0.76	-1.0
1,953,582	+		GFF1929	0.76	+0.5
1,953,589	+		GFF1929	0.77	-0.5
1,953,597	-		GFF1929	0.77	+0.1
1,953,608	-		GFF1929	0.78	+1.3
1,953,614	+		GFF1929	0.79	+0.5
1,953,614	+		GFF1929	0.79	-0.7
1,953,614	+		GFF1929	0.79	+1.0
1,953,622	-		GFF1929	0.80	-1.2
1,953,648	+		GFF1929	0.82	-1.3
1,953,658	-		GFF1929	0.83	+0.6
1,953,670	-		GFF1929	0.84	+0.0
1,953,709	+		GFF1929	0.87	-2.1
1,953,715	-		GFF1929	0.88	-0.0
1,953,721	+		GFF1929	0.88	+1.7
1,953,761	+				+2.3
1,953,761	+				+1.1
1,953,761	+				-1.0
1,953,761	+				+1.4
1,953,761	+				-0.6
1,953,761	+				-0.0
1,953,769	-				+0.3
1,953,769	-				+0.2
1,953,769	-				-0.3
1,953,769	-				+0.9
1,953,769	-				-0.7
1,953,782	-				-0.4
1,953,782	-				-1.8
1,953,784	+				-1.1
1,953,818	-				-1.8
1,953,832	-				+0.0
1,953,893	-				-0.9
1,953,901	-				+1.4
1,953,903	+				+0.3
1,953,903	+				-0.1
1,953,911	+				+0.3
1,953,947	+		GFF1930	0.10	-0.5
1,953,952	+		GFF1930	0.11	-0.1
1,953,952	+		GFF1930	0.11	+0.2
1,953,952	+		GFF1930	0.11	-0.5
1,953,955	-		GFF1930	0.11	-0.2
1,953,960	-		GFF1930	0.11	-2.0
1,953,960	-		GFF1930	0.11	+1.0
1,953,960	-		GFF1930	0.11	+1.1
1,953,984	+		GFF1930	0.14	+0.9
1,953,992	-		GFF1930	0.15	-1.8
1,954,002	+		GFF1930	0.16	-0.0
1,954,002	+		GFF1930	0.16	-1.1
1,954,003	+		GFF1930	0.16	-2.0
1,954,010	-		GFF1930	0.16	-0.4
1,954,010	-		GFF1930	0.16	-0.7
1,954,021	+		GFF1930	0.18	+0.6
1,954,021	+		GFF1930	0.18	-0.7
1,954,026	+		GFF1930	0.18	-2.4
1,954,026	+		GFF1930	0.18	+0.2
1,954,026	+		GFF1930	0.18	-1.4
1,954,027	+		GFF1930	0.18	-1.7
1,954,029	-		GFF1930	0.18	-1.2
1,954,034	-		GFF1930	0.19	-2.3
1,954,034	-		GFF1930	0.19	-0.2
1,954,034	-		GFF1930	0.19	-0.4
1,954,046	+		GFF1930	0.20	-0.5
1,954,053	+		GFF1930	0.21	-0.9
1,954,063	+		GFF1930	0.22	-1.8
1,954,071	+		GFF1930	0.22	-0.8
1,954,079	-		GFF1930	0.23	-0.9
1,954,102	+		GFF1930	0.26	+0.5
1,954,140	-		GFF1930	0.29	+1.4
1,954,149	+		GFF1930	0.30	-0.3
1,954,149	+		GFF1930	0.30	-1.4
1,954,151	+		GFF1930	0.30	-0.4
1,954,164	-		GFF1930	0.32	+0.5
1,954,169	-		GFF1930	0.32	-1.1
1,954,174	-		GFF1930	0.33	-1.5
1,954,204	+		GFF1930	0.36	-1.0
1,954,212	-		GFF1930	0.36	-0.4
1,954,217	-		GFF1930	0.37	-1.0
1,954,217	-		GFF1930	0.37	+1.0
1,954,244	+		GFF1930	0.40	-0.4
1,954,249	+		GFF1930	0.40	-0.6
1,954,251	+		GFF1930	0.40	-0.8
1,954,259	-		GFF1930	0.41	+0.2
1,954,259	-		GFF1930	0.41	-1.2
1,954,264	-		GFF1930	0.42	-1.0
1,954,271	-		GFF1930	0.42	-0.3
1,954,287	+		GFF1930	0.44	-0.1
1,954,293	+		GFF1930	0.44	+0.1
1,954,293	+		GFF1930	0.44	+0.7
1,954,295	-		GFF1930	0.45	-0.7
1,954,297	-		GFF1930	0.45	-0.5
1,954,300	+		GFF1930	0.45	-0.7
1,954,300	+		GFF1930	0.45	+0.1
1,954,300	+		GFF1930	0.45	+1.1
1,954,302	+		GFF1930	0.45	-0.5
1,954,308	-		GFF1930	0.46	+0.1
1,954,308	-		GFF1930	0.46	+0.8
1,954,318	+		GFF1930	0.47	+0.6
1,954,318	+		GFF1930	0.47	+0.7
1,954,326	-		GFF1930	0.48	-0.1
1,954,326	-		GFF1930	0.48	-0.8
1,954,364	+		GFF1930	0.51	+0.2
1,954,372	-		GFF1930	0.52	+0.5
1,954,398	+		GFF1930	0.55	-2.1
1,954,406	-		GFF1930	0.56	-1.4
1,954,445	+		GFF1930	0.59	-1.8
1,954,445	+		GFF1930	0.59	+0.1
1,954,445	+		GFF1930	0.59	-1.0
1,954,453	+		GFF1930	0.60	-0.1
1,954,453	-		GFF1930	0.60	-0.5
1,954,453	-		GFF1930	0.60	-1.5
1,954,453	-		GFF1930	0.60	+0.3
1,954,453	-		GFF1930	0.60	-0.7
1,954,453	-		GFF1930	0.60	-0.1
1,954,459	-		GFF1930	0.61	+0.3
1,954,484	+		GFF1930	0.63	+0.5
1,954,484	-		GFF1930	0.63	+0.4
1,954,511	+		GFF1930	0.66	+0.7
1,954,512	+		GFF1930	0.66	+0.1
1,954,513	-		GFF1930	0.66	-1.5
1,954,513	-		GFF1930	0.66	-1.7
1,954,549	+		GFF1930	0.70	+0.1
1,954,554	+		GFF1930	0.70	-0.7
1,954,557	-		GFF1930	0.71	-1.2
1,954,557	-		GFF1930	0.71	-1.7
1,954,562	-		GFF1930	0.71	+0.1
1,954,564	-		GFF1930	0.71	+1.3
1,954,575	+		GFF1930	0.72	-0.1
1,954,585	-		GFF1930	0.73	+1.3
1,954,588	+		GFF1930	0.74	-0.9
1,954,588	+		GFF1930	0.74	+0.6
1,954,602	-		GFF1930	0.75	-0.3
1,954,619	-		GFF1930	0.77	-1.1
1,954,621	-		GFF1930	0.77	-1.2
1,954,621	-		GFF1930	0.77	+0.5
1,954,642	-		GFF1930	0.79	-0.4
1,954,647	-		GFF1930	0.79	-1.1
1,954,653	+		GFF1930	0.80	-0.2
1,954,653	+		GFF1930	0.80	+0.6
1,954,653	+		GFF1930	0.80	+1.2
1,954,653	+		GFF1930	0.80	-0.2
1,954,653	+		GFF1930	0.80	-0.0
1,954,653	+		GFF1930	0.80	+0.8
1,954,653	+		GFF1930	0.80	+0.8
1,954,659	-		GFF1930	0.81	+0.0
1,954,661	-		GFF1930	0.81	-0.2
1,954,668	+		GFF1930	0.82	+0.6
1,954,668	+		GFF1930	0.82	+0.5
1,954,668	+		GFF1930	0.82	+0.7
1,954,678	+		GFF1930	0.82	-0.9
1,954,688	-		GFF1930	0.83	+0.9
1,954,700	+		GFF1930	0.85	+0.7
1,954,702	+		GFF1930	0.85	-2.5
1,954,702	+		GFF1930	0.85	+0.5
1,954,702	+		GFF1930	0.85	-2.3
1,954,702	+		GFF1930	0.85	+0.5
1,954,708	-		GFF1930	0.85	-0.0
1,954,710	-		GFF1930	0.86	+0.6
1,954,710	-		GFF1930	0.86	-0.6
1,954,710	-		GFF1930	0.86	-0.5
1,954,710	-		GFF1930	0.86	-2.0
1,954,710	-		GFF1930	0.86	-0.5
1,954,710	-		GFF1930	0.86	-0.3
1,954,710	-		GFF1930	0.86	-1.5
1,954,715	-		GFF1930	0.86	+0.3
1,954,750	+		GFF1930	0.90	-0.6
1,954,770	-				+0.0
1,954,785	+				+0.9
1,954,785	+				+0.6
1,954,847	-				-0.6
1,954,847	-				-0.4