Strain Fitness in Sphingobium sp. HT1-2 around GFF1893

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,916,467	-				-2.8
1,916,467	-				-0.8
1,916,467	-				-1.6
1,916,469	+				-2.9
1,916,469	+				-2.4
1,916,470	+				-1.4
1,916,477	-				-3.1
1,916,487	-				-2.1
1,916,498	+				-0.0
1,916,498	+				+0.7
1,916,498	+				-0.2
1,916,498	+				-0.3
1,916,498	+				+0.2
1,916,498	+				-1.4
1,916,503	+				-0.9
1,916,506	-				+0.4
1,916,506	-				-1.3
1,916,506	-				-0.9
1,916,508	+				-0.3
1,916,508	+				+0.7
1,916,508	+				-0.9
1,916,508	+				-1.5
1,916,511	-				-0.2
1,916,515	+				+0.1
1,916,516	-				+0.4
1,916,516	-				+0.3
1,916,516	-				+0.4
1,916,526	+				+0.1
1,916,526	+				+0.2
1,916,529	-				+0.3
1,916,534	-				+0.7
1,916,563	+				+0.7
1,916,587	+				+0.3
1,916,589	+				+0.4
1,916,594	+				+1.4
1,916,595	-				+1.3
1,916,602	-				+0.7
1,916,614	-				-1.1
1,916,619	+		GFF1892	0.10	+0.6
1,916,619	+		GFF1892	0.10	+0.1
1,916,619	+		GFF1892	0.10	+0.7
1,916,624	+		GFF1892	0.11	+0.1
1,916,625	+		GFF1892	0.11	+0.7
1,916,634	+		GFF1892	0.12	-0.2
1,916,636	+		GFF1892	0.12	-0.5
1,916,644	-		GFF1892	0.13	+0.3
1,916,691	-		GFF1892	0.18	-0.5
1,916,749	+		GFF1892	0.25	+0.7
1,916,757	-		GFF1892	0.25	-1.3
1,916,776	+		GFF1892	0.28	+0.2
1,916,779	-		GFF1892	0.28	+0.1
1,916,786	+		GFF1892	0.29	+0.5
1,916,786	+		GFF1892	0.29	+0.8
1,916,794	-		GFF1892	0.30	-0.4
1,916,794	-		GFF1892	0.30	-0.1
1,916,794	-		GFF1892	0.30	-1.0
1,916,823	+		GFF1892	0.33	-0.6
1,916,831	-		GFF1892	0.34	-0.2
1,916,865	+		GFF1892	0.37	+1.5
1,916,865	+		GFF1892	0.37	-0.1
1,916,868	-		GFF1892	0.38	-0.1
1,916,873	-		GFF1892	0.38	+0.4
1,916,883	-		GFF1892	0.39	+1.3
1,916,889	+		GFF1892	0.40	+0.6
1,916,897	-		GFF1892	0.41	-0.0
1,916,901	+		GFF1892	0.41	-0.0
1,916,906	+		GFF1892	0.42	+1.4
1,916,922	-		GFF1892	0.44	-0.8
1,916,989	-		GFF1892	0.51	-0.7
1,916,989	-		GFF1892	0.51	+0.8
1,916,989	-		GFF1892	0.51	-2.5
1,916,989	-		GFF1892	0.51	+1.8
1,917,003	+		GFF1892	0.53	+0.9
1,917,009	-		GFF1892	0.54	-0.7
1,917,015	-		GFF1892	0.54	+0.9
1,917,038	+		GFF1892	0.57	-0.8
1,917,065	+		GFF1892	0.60	+0.4
1,917,068	+		GFF1892	0.60	+0.7
1,917,076	-		GFF1892	0.61	-0.7
1,917,095	+		GFF1892	0.63	-0.3
1,917,104	-		GFF1892	0.64	-0.6
1,917,115	-		GFF1892	0.65	+0.4
1,917,117	-		GFF1892	0.66	+0.6
1,917,117	-		GFF1892	0.66	+0.6
1,917,172	+		GFF1892	0.72	-0.5
1,917,184	+		GFF1892	0.73	+0.2
1,917,190	-		GFF1892	0.74	+1.4
1,917,192	+		GFF1892	0.74	+0.4
1,917,192	+		GFF1892	0.74	+0.5
1,917,192	+		GFF1892	0.74	-0.8
1,917,192	+		GFF1892	0.74	+1.2
1,917,192	+		GFF1892	0.74	-0.3
1,917,199	+		GFF1892	0.75	-2.2
1,917,199	+		GFF1892	0.75	+1.2
1,917,200	-		GFF1892	0.75	+0.1
1,917,252	-		GFF1892	0.81	-0.4
1,917,270	+		GFF1892	0.83	+0.9
1,917,278	-		GFF1892	0.84	+1.1
1,917,278	-		GFF1892	0.84	-0.6
1,917,285	-		GFF1892	0.84	+0.9
1,917,285	-		GFF1892	0.84	+0.2
1,917,303	+		GFF1892	0.86	+0.7
1,917,314	-		GFF1892	0.88	-0.7
1,917,338	+				+0.9
1,917,347	+				+0.1
1,917,347	+				-1.4
1,917,347	+				-0.5
1,917,347	+				-1.5
1,917,347	+				+0.1
1,917,347	+				+1.6
1,917,347	+				+0.1
1,917,347	+				+0.3
1,917,347	+				+0.7
1,917,347	+				-0.4
1,917,347	+				+0.0
1,917,347	+				+0.5
1,917,352	+				-0.0
1,917,355	-				+0.9
1,917,355	-				-0.0
1,917,355	-				+0.7
1,917,355	-				+1.6
1,917,355	-				+0.8
1,917,355	-				-0.4
1,917,355	-				-0.1
1,917,355	-				-0.6
1,917,355	-				-0.3
1,917,355	-				-0.2
1,917,355	-				-1.2
1,917,355	-				+0.1
1,917,355	-				+0.8
1,917,355	-				-0.6
1,917,355	-				-0.7
1,917,362	-				+2.0
1,917,365	-				+0.6
1,917,370	-				-1.3
1,917,380	+				-0.0
1,917,380	+				-1.9
1,917,381	-				-1.4
1,917,386	-				-0.9
1,917,388	-				-0.6
1,917,389	-				-0.1
1,917,413	+				+1.8
1,917,421	-				+1.0
1,917,443	-				-0.5
1,917,460	-				+0.4
1,917,460	-				-0.9
1,917,465	-				+0.7
1,917,472	+				+0.7
1,917,494	+				-0.8
1,917,525	+		GFF1893	0.19	+0.0
1,917,546	-		GFF1893	0.26	+0.8
1,917,551	-		GFF1893	0.27	-0.6
1,917,586	+		GFF1893	0.39	+0.1
1,917,594	-		GFF1893	0.42	+0.1
1,917,602	-		GFF1893	0.44	-1.2
1,917,607	-		GFF1893	0.46	-0.6
1,917,607	-		GFF1893	0.46	+0.1
1,917,672	-		GFF1893	0.67	+0.2
1,917,672	-		GFF1893	0.67	-0.6
1,917,678	+		GFF1893	0.69	-2.1
1,917,689	+		GFF1893	0.73	+0.5
1,917,689	+		GFF1893	0.73	-0.4
1,917,689	+		GFF1893	0.73	-0.3
1,917,689	+		GFF1893	0.73	+0.6
1,917,689	+		GFF1893	0.73	-0.8
1,917,689	+		GFF1893	0.73	+0.1
1,917,689	+		GFF1893	0.73	-2.2
1,917,689	+		GFF1893	0.73	-1.3
1,917,689	+		GFF1893	0.73	+0.5
1,917,689	+		GFF1893	0.73	-0.6
1,917,689	+		GFF1893	0.73	+1.0
1,917,689	+		GFF1893	0.73	-0.8
1,917,689	+		GFF1893	0.73	-2.2
1,917,689	+		GFF1893	0.73	-0.1
1,917,689	+		GFF1893	0.73	-3.3
1,917,689	+		GFF1893	0.73	-0.4
1,917,689	+		GFF1893	0.73	-0.1
1,917,689	+		GFF1893	0.73	+0.3
1,917,689	+		GFF1893	0.73	-1.1
1,917,697	-		GFF1893	0.75	+0.0
1,917,697	-		GFF1893	0.75	-0.9
1,917,697	-		GFF1893	0.75	-2.1
1,917,697	-		GFF1893	0.75	+0.6
1,917,697	-		GFF1893	0.75	-1.3
1,917,697	-		GFF1893	0.75	-0.5
1,917,697	-		GFF1893	0.75	-0.2
1,917,697	-		GFF1893	0.75	-0.7
1,917,697	-		GFF1893	0.75	-0.8
1,917,697	-		GFF1893	0.75	-0.0
1,917,697	-		GFF1893	0.75	+0.3
1,917,697	-		GFF1893	0.75	+0.3
1,917,697	-		GFF1893	0.75	+0.4
1,917,697	-		GFF1893	0.75	-1.8
1,917,697	-		GFF1893	0.75	-1.0
1,917,705	+		GFF1893	0.78	+1.1
1,917,708	+		GFF1893	0.79	+0.7
1,917,708	+		GFF1893	0.79	+1.2
1,917,708	+		GFF1893	0.79	+1.1
1,917,708	+		GFF1893	0.79	+0.6
1,917,708	+		GFF1893	0.79	-1.6
1,917,708	+		GFF1893	0.79	-1.3
1,917,708	-		GFF1893	0.79	-0.2
1,917,708	-		GFF1893	0.79	+0.8
1,917,713	+		GFF1893	0.80	+0.1
1,917,716	-		GFF1893	0.81	+1.4
1,917,716	-		GFF1893	0.81	-0.7
1,917,716	-		GFF1893	0.81	-0.9
1,917,716	-		GFF1893	0.81	+0.9
1,917,716	-		GFF1893	0.81	-1.4
1,917,716	-		GFF1893	0.81	-0.9
1,917,728	+		GFF1893	0.85	-1.8
1,917,728	+		GFF1893	0.85	-0.4
1,917,736	-		GFF1893	0.88	-1.0
1,917,749	+				+0.6
1,917,754	+				-2.1
1,917,883	-				-0.7
1,917,883	-				-0.6
1,917,883	-				+0.6
1,917,883	-				-0.5
1,917,883	-				-1.3
1,917,883	-				+0.7
1,917,883	-				-2.0
1,917,885	+				+0.2
1,917,906	+				-0.3
1,917,906	+				-0.1
1,917,906	+				-1.1
1,917,982	+		GFF1894	0.16	-0.5
1,917,990	-		GFF1894	0.18	-1.3
1,918,039	-		GFF1894	0.27	+0.1
1,918,043	+		GFF1894	0.28	+0.6
1,918,051	-		GFF1894	0.30	-0.8
1,918,051	-		GFF1894	0.30	+0.3
1,918,070	+		GFF1894	0.33	+0.1
1,918,070	+		GFF1894	0.33	-1.3
1,918,075	+		GFF1894	0.34	-1.7
1,918,078	-		GFF1894	0.35	+1.0
1,918,078	-		GFF1894	0.35	-0.2
1,918,083	-		GFF1894	0.36	+0.1
1,918,085	+		GFF1894	0.36	+0.3
1,918,085	+		GFF1894	0.36	-1.6
1,918,090	+		GFF1894	0.37	-1.8
1,918,120	+		GFF1894	0.43	+0.2
1,918,120	+		GFF1894	0.43	+0.4
1,918,128	-		GFF1894	0.44	+0.6
1,918,147	+		GFF1894	0.48	+1.0
1,918,155	-		GFF1894	0.49	-2.0
1,918,175	+		GFF1894	0.53	-0.6
1,918,200	-		GFF1894	0.58	-0.2
1,918,223	+		GFF1894	0.62	-0.5
1,918,231	-		GFF1894	0.64	-0.5
1,918,231	-		GFF1894	0.64	+1.7
1,918,236	+		GFF1894	0.65	-0.4
1,918,236	+		GFF1894	0.65	-1.4
1,918,239	-		GFF1894	0.65	-1.5
1,918,284	+		GFF1894	0.74	-0.0
1,918,429	+				-0.3
1,918,429	+				-0.5
1,918,437	-				+0.9
1,918,437	-				+0.5
1,918,437	-				-2.0
1,918,437	-				-0.9
1,918,463	+				-0.2
1,918,463	+				+1.5
1,918,463	+				-0.3
1,918,463	+				-0.2
1,918,463	+				+0.9
1,918,463	+				-0.9
1,918,463	+				+1.2
1,918,463	+				+0.0
1,918,463	+				+0.8
1,918,471	-				-1.5
1,918,471	-				+0.3
1,918,471	-				+0.2
1,918,471	-				+1.2
1,918,471	-				+1.2
1,918,471	-				-2.8
1,918,479	-				+0.2
1,918,531	-				-0.8
1,918,602	+		GFF1895	0.12	-1.9
1,918,625	+		GFF1895	0.14	+0.2
1,918,656	-		GFF1895	0.16	-1.0
1,918,709	+		GFF1895	0.20	+0.8
1,918,709	+		GFF1895	0.20	-1.5
1,918,717	-		GFF1895	0.21	+0.7
1,918,717	-		GFF1895	0.21	-0.9
1,918,717	-		GFF1895	0.21	+0.2
1,918,717	-		GFF1895	0.21	+1.3
1,918,731	+		GFF1895	0.22	+0.1
1,918,735	-		GFF1895	0.22	-0.3
1,918,772	+		GFF1895	0.25	+0.2
1,918,772	+		GFF1895	0.25	+0.3