Strain Fitness in Sphingobium sp. HT1-2 around GFF1820

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,840,615	+		GFF1817	0.81	+0.0
1,840,691	+		GFF1817	0.87	+1.1
1,840,696	+		GFF1817	0.87	-2.3
1,840,696	+		GFF1817	0.87	+0.8
1,840,697	+		GFF1817	0.87	+0.2
1,840,713	+		GFF1817	0.88	+0.3
1,840,713	+		GFF1817	0.88	+0.1
1,840,714	-		GFF1817	0.88	-1.4
1,840,714	-		GFF1817	0.88	-1.3
1,840,714	-		GFF1817	0.88	-0.7
1,840,721	-		GFF1817	0.89	+0.1
1,840,721	-		GFF1817	0.89	-0.0
1,840,726	-		GFF1817	0.89	+1.2
1,840,726	-		GFF1817	0.89	-0.7
1,840,732	+		GFF1817	0.90	+0.0
1,840,732	+		GFF1817	0.90	-0.7
1,840,732	+		GFF1817	0.90	+0.4
1,840,740	-				-0.7
1,840,740	-				+0.6
1,840,740	-				-0.3
1,840,740	-				-1.5
1,840,779	-				+0.3
1,840,838	-				-0.4
1,840,839	+				-1.3
1,840,856	+				-0.5
1,840,856	+				-1.1
1,840,856	+				-0.9
1,840,864	-				-1.9
1,840,874	+				+0.6
1,840,893	+				-0.5
1,840,893	+				-1.0
1,840,901	-				-2.2
1,840,912	+		GFF1818	0.10	-3.0
1,840,932	-		GFF1818	0.14	-0.4
1,840,939	+		GFF1818	0.15	-0.8
1,840,939	+		GFF1818	0.15	+1.2
1,840,939	+		GFF1818	0.15	+1.4
1,840,939	+		GFF1818	0.15	-0.7
1,840,939	+		GFF1818	0.15	-0.5
1,840,939	+		GFF1818	0.15	-0.0
1,840,947	+		GFF1818	0.17	+0.7
1,840,947	+		GFF1818	0.17	-0.7
1,840,947	+		GFF1818	0.17	+1.3
1,840,947	+		GFF1818	0.17	+0.4
1,840,947	-		GFF1818	0.17	+0.9
1,840,947	-		GFF1818	0.17	+0.4
1,840,947	-		GFF1818	0.17	-0.1
1,840,947	-		GFF1818	0.17	+0.6
1,840,947	-		GFF1818	0.17	-1.4
1,840,947	-		GFF1818	0.17	+0.6
1,840,947	-		GFF1818	0.17	+0.5
1,840,947	-		GFF1818	0.17	-0.6
1,840,955	-		GFF1818	0.18	-0.5
1,840,955	-		GFF1818	0.18	+0.9
1,840,957	+		GFF1818	0.19	+0.6
1,840,963	+		GFF1818	0.20	+0.5
1,840,985	+		GFF1818	0.24	-0.7
1,840,993	-		GFF1818	0.25	-0.8
1,840,993	-		GFF1818	0.25	+0.8
1,840,993	-		GFF1818	0.25	+0.4
1,841,039	+		GFF1818	0.34	-1.1
1,841,040	-		GFF1818	0.34	+0.8
1,841,048	+		GFF1818	0.36	-0.1
1,841,056	-		GFF1818	0.37	+0.4
1,841,064	+		GFF1818	0.39	-0.6
1,841,072	-		GFF1818	0.40	+0.1
1,841,105	-		GFF1818	0.46	-1.1
1,841,110	-		GFF1818	0.47	-1.5
1,841,115	-		GFF1818	0.48	-1.9
1,841,132	-		GFF1818	0.51	+0.1
1,841,139	+		GFF1818	0.53	-0.4
1,841,174	+		GFF1818	0.59	-0.2
1,841,174	+		GFF1818	0.59	+0.9
1,841,174	+		GFF1818	0.59	-0.6
1,841,180	-		GFF1818	0.60	-0.1
1,841,180	-		GFF1818	0.60	-0.7
1,841,182	-		GFF1818	0.61	+1.3
1,841,189	+		GFF1818	0.62	-1.8
1,841,253	+		GFF1818	0.74	+0.3
1,841,263	-		GFF1818	0.76	+0.3
1,841,277	-		GFF1818	0.79	-0.6
1,841,289	+		GFF1818	0.81	-1.0
1,841,289	+		GFF1818	0.81	+0.5
1,841,297	-		GFF1818	0.82	-2.7
1,841,315	+		GFF1818	0.86	+0.8
1,841,315	+		GFF1818	0.86	+0.3
1,841,315	+		GFF1818	0.86	-0.1
1,841,323	-		GFF1818	0.87	-0.7
1,841,323	-		GFF1818	0.87	+0.6
1,841,340	-				-0.0
1,841,369	+				+0.9
1,841,404	+				+1.1
1,841,413	-				-0.5
1,841,425	+				-1.7
1,841,425	+				-0.5
1,841,433	-				+1.3
1,841,433	-				-0.2
1,841,437	+				+0.5
1,841,445	-				-1.5
1,841,447	+				+0.3
1,841,447	+				-1.0
1,841,447	+				+0.3
1,841,450	-				+0.1
1,841,455	-				-0.4
1,841,455	-				-0.6
1,841,455	-				+0.1
1,841,458	+				-0.1
1,841,466	-		GFF1819	0.15	-0.4
1,841,511	-		GFF1819	0.76	-0.4
1,841,521	-				+2.1
1,841,562	+				-0.2
1,841,562	+				-0.3
1,841,574	+				-0.4
1,841,609	+				+0.3
1,841,609	+				+0.8
1,841,609	+				-0.4
1,841,616	+				+0.3
1,841,621	+				+1.7
1,841,621	+				+0.5
1,841,626	+				-0.3
1,841,631	+				-0.7
1,841,631	+				-1.4
1,841,631	+				+0.7
1,841,631	+				+1.2
1,841,631	+				-0.6
1,841,631	+				+1.4
1,841,631	+				-0.8
1,841,631	+				-0.8
1,841,631	+				-1.1
1,841,631	+				+0.1
1,841,636	+				+0.3
1,841,639	-				-0.3
1,841,639	-				+1.6
1,841,639	-				-1.9
1,841,639	-				-0.6
1,841,639	-				-0.3
1,841,639	-				+0.0
1,841,639	-				-0.5
1,841,639	-				+0.2
1,841,639	-				+1.4
1,841,644	-				+1.4
1,841,671	+				-1.1
1,841,681	+		GFF1820	0.10	-0.5
1,841,694	-		GFF1820	0.12	+0.3
1,841,701	-		GFF1820	0.13	+0.1
1,841,712	+		GFF1820	0.14	-1.0
1,841,746	+		GFF1820	0.19	+0.1
1,841,795	-		GFF1820	0.25	-0.3
1,841,803	-		GFF1820	0.26	-0.9
1,841,810	+		GFF1820	0.27	-1.6
1,841,822	+		GFF1820	0.28	+0.1
1,841,822	+		GFF1820	0.28	+0.1
1,841,841	-		GFF1820	0.31	-0.5
1,841,842	-		GFF1820	0.31	-0.7
1,841,894	+		GFF1820	0.38	-2.3
1,841,908	+		GFF1820	0.39	-0.1
1,841,908	+		GFF1820	0.39	+1.0
1,841,916	-		GFF1820	0.40	+0.4
1,841,926	+		GFF1820	0.42	+0.1
1,841,947	-		GFF1820	0.44	+0.7
1,841,963	+		GFF1820	0.46	-2.7
1,841,963	+		GFF1820	0.46	+0.4
1,841,963	+		GFF1820	0.46	+0.2
1,841,963	+		GFF1820	0.46	+0.7
1,841,963	+		GFF1820	0.46	+0.7
1,841,971	-		GFF1820	0.48	-0.1
1,841,972	-		GFF1820	0.48	-0.4
1,841,973	+		GFF1820	0.48	-0.2
1,841,973	+		GFF1820	0.48	+1.3
1,841,979	-		GFF1820	0.49	-0.5
1,841,981	-		GFF1820	0.49	-1.5
1,841,981	-		GFF1820	0.49	+0.6
1,841,981	-		GFF1820	0.49	-0.4
1,841,981	-		GFF1820	0.49	+0.1
1,841,981	-		GFF1820	0.49	+1.1
1,841,981	-		GFF1820	0.49	-0.3
1,841,981	-		GFF1820	0.49	+0.5
1,841,981	-		GFF1820	0.49	+0.5
1,841,988	+		GFF1820	0.50	+0.1
1,841,993	+		GFF1820	0.50	-0.1
1,841,993	+		GFF1820	0.50	+0.9
1,841,996	-		GFF1820	0.51	+0.0
1,842,001	-		GFF1820	0.51	+0.4
1,842,001	-		GFF1820	0.51	+0.3
1,842,015	-		GFF1820	0.53	-0.2
1,842,064	+		GFF1820	0.59	-0.6
1,842,068	+		GFF1820	0.60	-0.5
1,842,072	-		GFF1820	0.60	+0.1
1,842,091	-		GFF1820	0.63	+0.3
1,842,106	-		GFF1820	0.65	+0.2
1,842,108	+		GFF1820	0.65	-0.5
1,842,118	+		GFF1820	0.66	+0.2
1,842,118	+		GFF1820	0.66	+0.4
1,842,118	+		GFF1820	0.66	+0.3
1,842,120	+		GFF1820	0.67	-2.6
1,842,123	+		GFF1820	0.67	+1.5
1,842,123	+		GFF1820	0.67	-0.7
1,842,126	-		GFF1820	0.67	+1.2
1,842,126	-		GFF1820	0.67	-0.5
1,842,126	-		GFF1820	0.67	-0.3
1,842,131	-		GFF1820	0.68	-1.0
1,842,144	+		GFF1820	0.70	-0.2
1,842,146	+		GFF1820	0.70	+0.3
1,842,154	-		GFF1820	0.71	-1.0
1,842,155	+		GFF1820	0.71	-0.5
1,842,155	+		GFF1820	0.71	+0.7
1,842,157	-		GFF1820	0.71	-0.2
1,842,163	-		GFF1820	0.72	-0.3
1,842,163	-		GFF1820	0.72	-0.1
1,842,163	-		GFF1820	0.72	-1.7
1,842,163	-		GFF1820	0.72	-0.3
1,842,176	+		GFF1820	0.74	-0.3
1,842,178	+		GFF1820	0.74	-0.7
1,842,193	+		GFF1820	0.76	-0.5
1,842,194	+		GFF1820	0.76	-1.6
1,842,240	+		GFF1820	0.82	+0.2
1,842,248	+		GFF1820	0.83	+0.4
1,842,255	+		GFF1820	0.84	+2.1
1,842,284	+		GFF1820	0.87	+0.1
1,842,291	+		GFF1820	0.88	-0.1
1,842,291	+		GFF1820	0.88	+0.2
1,842,297	-		GFF1820	0.89	+0.6
1,842,350	+				+0.4
1,842,360	+				-0.8
1,842,360	+				+0.2
1,842,360	+				+0.3
1,842,361	+				+0.1
1,842,368	-				+0.5
1,842,368	-				+0.6
1,842,375	+				+0.0
1,842,375	+				-0.5
1,842,375	+				-2.4
1,842,375	+				+0.5
1,842,385	+				-0.1
1,842,395	+				-0.6
1,842,403	-				-1.8
1,842,410	+				-0.7
1,842,410	+				-0.3
1,842,462	+		GFF1821	0.21	+0.2
1,842,470	-		GFF1821	0.23	-1.7
1,842,488	+		GFF1821	0.28	+0.8
1,842,494	+		GFF1821	0.29	-0.3
1,842,504	+		GFF1821	0.32	+0.2
1,842,504	+		GFF1821	0.32	-0.9
1,842,528	+		GFF1821	0.38	+0.3
1,842,533	+		GFF1821	0.40	+0.2
1,842,533	+		GFF1821	0.40	+0.1
1,842,541	-		GFF1821	0.42	-1.9
1,842,541	-		GFF1821	0.42	-2.3
1,842,543	+		GFF1821	0.42	-0.9
1,842,551	-		GFF1821	0.44	-1.4
1,842,551	-		GFF1821	0.44	-1.3
1,842,551	-		GFF1821	0.44	+0.1
1,842,555	+		GFF1821	0.45	-1.2
1,842,579	-		GFF1821	0.52	-0.0
1,842,594	-		GFF1821	0.55	+0.7
1,842,614	-		GFF1821	0.61	-0.6
1,842,632	-		GFF1821	0.65	-1.9
1,842,632	-		GFF1821	0.65	-0.4
1,842,642	+		GFF1821	0.68	-1.4
1,842,642	+		GFF1821	0.68	-0.8
1,842,644	+		GFF1821	0.68	-0.7
1,842,644	+		GFF1821	0.68	-2.5
1,842,644	+		GFF1821	0.68	-1.2
1,842,650	-		GFF1821	0.70	-0.5
1,842,650	-		GFF1821	0.70	+0.2
1,842,692	+		GFF1821	0.81	-1.5
1,842,700	-		GFF1821	0.83	+0.6
1,842,721	-		GFF1821	0.89	-0.5
1,842,731	+				+0.5
1,842,740	+				-1.0
1,842,740	-				+0.2
1,842,763	-				+1.3
1,842,777	+				-0.3
1,842,814	-				-1.6
1,842,822	+				+0.9
1,842,849	+		GFF1822	0.12	-0.6
1,842,899	+		GFF1822	0.18	+0.1
1,842,899	+		GFF1822	0.18	-0.1
1,842,907	-		GFF1822	0.19	-0.5
1,842,917	-		GFF1822	0.20	-0.5
1,842,927	+		GFF1822	0.22	-0.9
1,842,928	+		GFF1822	0.22	-1.7
1,842,955	+		GFF1822	0.25	-0.8
1,842,955	+		GFF1822	0.25	+0.1
1,842,958	-		GFF1822	0.26	+0.6
1,842,967	-		GFF1822	0.27	+0.6
1,842,989	+		GFF1822	0.30	-2.3
1,842,990	-		GFF1822	0.30	+0.4
1,842,994	+		GFF1822	0.30	-0.3
1,843,025	+		GFF1822	0.34	-0.3
1,843,030	+		GFF1822	0.35	+0.4
1,843,030	+		GFF1822	0.35	-0.6
1,843,033	-		GFF1822	0.35	-0.7
1,843,033	-		GFF1822	0.35	-0.2
1,843,033	-		GFF1822	0.35	-0.7
1,843,049	+		GFF1822	0.37	-0.9
1,843,049	+		GFF1822	0.37	-0.9
1,843,049	+		GFF1822	0.37	-0.2
1,843,057	-		GFF1822	0.38	-0.6
1,843,057	-		GFF1822	0.38	+0.1
1,843,057	-		GFF1822	0.38	+0.5
1,843,089	+		GFF1822	0.42	-0.7
1,843,120	+		GFF1822	0.46	+0.3
1,843,122	-		GFF1822	0.47	-2.0
1,843,124	+		GFF1822	0.47	+0.2
1,843,124	+		GFF1822	0.47	-0.5
1,843,147	+		GFF1822	0.50	-0.7
1,843,161	-		GFF1822	0.52	-0.9
1,843,164	-		GFF1822	0.52	-2.8
1,843,199	-		GFF1822	0.56	-2.7
1,843,201	+		GFF1822	0.57	+1.1
1,843,209	+		GFF1822	0.58	+1.3
1,843,218	+		GFF1822	0.59	+0.3
1,843,226	-		GFF1822	0.60	-1.5
1,843,231	+		GFF1822	0.61	+0.8
1,843,231	-		GFF1822	0.61	-0.6
1,843,250	+		GFF1822	0.63	-0.1
1,843,250	+		GFF1822	0.63	-0.8
1,843,250	+		GFF1822	0.63	+0.1
1,843,253	-		GFF1822	0.63	-1.1
1,843,255	+		GFF1822	0.64	-0.6
1,843,258	-		GFF1822	0.64	-2.2
1,843,263	-		GFF1822	0.65	+0.4
1,843,289	-		GFF1822	0.68	-0.1
1,843,295	+		GFF1822	0.69	-0.3
1,843,295	+		GFF1822	0.69	-1.2
1,843,303	-		GFF1822	0.70	-0.9
1,843,316	-		GFF1822	0.71	+0.5
1,843,318	+		GFF1822	0.72	-0.4
1,843,318	+		GFF1822	0.72	-1.0
1,843,318	+		GFF1822	0.72	-0.4
1,843,325	+		GFF1822	0.73	+0.1
1,843,326	-		GFF1822	0.73	+0.2
1,843,326	-		GFF1822	0.73	-0.0
1,843,331	-		GFF1822	0.73	-0.4
1,843,331	-		GFF1822	0.73	-1.7
1,843,331	-		GFF1822	0.73	-0.5
1,843,333	-		GFF1822	0.74	-1.1
1,843,333	-		GFF1822	0.74	+0.5
1,843,348	-		GFF1822	0.75	+0.7
1,843,366	+		GFF1822	0.78	-0.4
1,843,366	+		GFF1822	0.78	-0.5
1,843,366	+		GFF1822	0.78	+0.2
1,843,374	-		GFF1822	0.79	-0.8
1,843,374	-		GFF1822	0.79	+0.4
1,843,374	-		GFF1822	0.79	+0.0
1,843,374	-		GFF1822	0.79	+0.1
1,843,374	-		GFF1822	0.79	-0.9