Strain Fitness in Sphingobium sp. HT1-2 around GFF1798

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,818,498	+				-0.1
1,818,498	+				+0.9
1,818,498	+				+1.1
1,818,498	+				+0.2
1,818,506	-				+0.4
1,818,511	+				+1.7
1,818,577	+				-0.8
1,818,670	-		GFF1796	0.31	+0.5
1,818,683	+		GFF1796	0.39	-0.2
1,818,699	-		GFF1796	0.49	+0.8
1,818,725	+		GFF1796	0.66	-0.8
1,818,726	+		GFF1796	0.67	+0.9
1,818,726	+		GFF1796	0.67	-0.0
1,818,736	+		GFF1796	0.73	-0.8
1,818,736	+		GFF1796	0.73	-1.9
1,818,762	+				-0.4
1,818,762	+				+1.0
1,818,762	+				+1.1
1,818,764	+				+0.9
1,818,764	+				-1.4
1,818,765	-				+0.7
1,818,770	-				-2.3
1,818,770	-				-1.1
1,818,770	-				-0.6
1,818,770	-				-0.1
1,818,770	-				-0.2
1,818,771	+				-0.6
1,818,772	+				-1.5
1,818,772	-				-0.5
1,818,772	-				-1.2
1,818,780	-				-0.4
1,818,803	+				+0.1
1,818,803	+				+1.0
1,818,816	+				+0.2
1,818,822	+				+1.0
1,818,824	-				-0.4
1,818,858	-				-0.0
1,818,917	-				-1.4
1,818,919	-				-0.9
1,818,923	+				-0.7
1,818,923	+				-0.5
1,818,928	+				-0.6
1,818,929	+				-1.0
1,818,930	+				-0.3
1,818,930	+				+1.5
1,818,938	-				+0.1
1,818,948	-				+1.9
1,818,963	+				-0.2
1,818,963	+				-0.6
1,818,965	+				-0.3
1,818,965	+				+0.1
1,818,965	+				-0.9
1,818,966	+				-0.6
1,818,971	-				+1.2
1,818,971	-				-1.9
1,818,973	-				-1.0
1,818,985	+				-1.0
1,818,985	+				+0.6
1,818,985	+				-1.3
1,818,993	-				+0.2
1,818,995	+				-2.4
1,819,006	+				-0.3
1,819,014	-				-0.2
1,819,021	-				+0.9
1,819,044	-				-0.8
1,819,049	-				+0.1
1,819,069	-				-0.5
1,819,114	+				-0.2
1,819,156	-				+0.5
1,819,162	-				+0.2
1,819,163	-				+0.1
1,819,237	+		GFF1797	0.19	+0.5
1,819,245	-		GFF1797	0.23	-0.9
1,819,270	+		GFF1797	0.36	-1.1
1,819,270	+		GFF1797	0.36	+0.5
1,819,278	-		GFF1797	0.40	-1.5
1,819,278	-		GFF1797	0.40	-1.6
1,819,290	-		GFF1797	0.46	+1.6
1,819,290	-		GFF1797	0.46	-0.6
1,819,311	+		GFF1797	0.57	-0.4
1,819,316	+		GFF1797	0.60	-0.3
1,819,324	-		GFF1797	0.64	+0.1
1,819,337	-		GFF1797	0.71	-0.0
1,819,362	+		GFF1797	0.84	+1.2
1,819,370	-		GFF1797	0.88	-0.2
1,819,370	-		GFF1797	0.88	-0.4
1,819,386	-				+0.3
1,819,399	-				-0.6
1,819,401	+				-0.3
1,819,406	+				+1.3
1,819,414	-				-1.3
1,819,414	-				-0.9
1,819,416	-				-0.8
1,819,450	+				-1.3
1,819,450	+				-0.6
1,819,450	+				-1.2
1,819,450	+				+0.7
1,819,450	+				-1.5
1,819,450	+				+0.7
1,819,457	+				-3.1
1,819,458	-				+0.7
1,819,458	-				-1.0
1,819,458	-				-0.3
1,819,460	+				+2.0
1,819,470	-				+0.9
1,819,526	-		GFF1798	0.11	+0.5
1,819,531	+		GFF1798	0.12	+0.6
1,819,536	+		GFF1798	0.13	-0.2
1,819,539	-		GFF1798	0.13	+0.6
1,819,539	-		GFF1798	0.13	+0.3
1,819,539	-		GFF1798	0.13	-0.2
1,819,544	-		GFF1798	0.14	+0.9
1,819,544	-		GFF1798	0.14	-0.9
1,819,544	-		GFF1798	0.14	-0.5
1,819,559	+		GFF1798	0.17	-1.3
1,819,564	+		GFF1798	0.18	-2.7
1,819,567	-		GFF1798	0.18	+1.2
1,819,638	+		GFF1798	0.32	-1.1
1,819,638	+		GFF1798	0.32	+1.2
1,819,638	+		GFF1798	0.32	+0.2
1,819,638	+		GFF1798	0.32	-3.1
1,819,638	+		GFF1798	0.32	-0.5
1,819,638	+		GFF1798	0.32	+1.9
1,819,646	-		GFF1798	0.33	-0.7
1,819,646	-		GFF1798	0.33	-0.2
1,819,653	-		GFF1798	0.34	+0.9
1,819,718	+		GFF1798	0.46	-1.0
1,819,718	+		GFF1798	0.46	-0.1
1,819,718	+		GFF1798	0.46	+1.3
1,819,736	-		GFF1798	0.49	+0.2
1,819,738	+		GFF1798	0.50	-0.0
1,819,740	+		GFF1798	0.50	+0.8
1,819,740	+		GFF1798	0.50	+0.8
1,819,745	+		GFF1798	0.51	-0.8
1,819,746	-		GFF1798	0.51	-0.0
1,819,746	-		GFF1798	0.51	+0.1
1,819,748	-		GFF1798	0.52	-0.1
1,819,748	-		GFF1798	0.52	-1.5
1,819,748	-		GFF1798	0.52	+1.1
1,819,748	-		GFF1798	0.52	-0.3
1,819,748	-		GFF1798	0.52	-0.0
1,819,748	-		GFF1798	0.52	+0.6
1,819,748	-		GFF1798	0.52	-0.2
1,819,748	-		GFF1798	0.52	+0.1
1,819,748	-		GFF1798	0.52	-1.2
1,819,748	-		GFF1798	0.52	-1.6
1,819,753	-		GFF1798	0.53	-0.4
1,819,753	-		GFF1798	0.53	+0.7
1,819,753	-		GFF1798	0.53	-1.4
1,819,762	+		GFF1798	0.54	+0.5
1,819,762	+		GFF1798	0.54	-0.6
1,819,770	-		GFF1798	0.56	-0.9
1,819,770	-		GFF1798	0.56	-0.5
1,819,772	-		GFF1798	0.56	+0.6
1,819,772	-		GFF1798	0.56	+0.3
1,819,790	+		GFF1798	0.59	+0.6
1,819,795	+		GFF1798	0.60	-0.7
1,819,795	+		GFF1798	0.60	+1.3
1,819,795	+		GFF1798	0.60	-0.0
1,819,803	-		GFF1798	0.62	+0.3
1,819,803	-		GFF1798	0.62	-0.7
1,819,803	-		GFF1798	0.62	-0.5
1,819,803	-		GFF1798	0.62	+0.0
1,819,803	-		GFF1798	0.62	+0.2
1,819,803	-		GFF1798	0.62	+0.3
1,819,803	-		GFF1798	0.62	-1.4
1,819,803	-		GFF1798	0.62	-3.0
1,819,803	-		GFF1798	0.62	+1.3
1,819,804	-		GFF1798	0.62	-1.4
1,819,825	+		GFF1798	0.66	-0.4
1,819,832	+		GFF1798	0.67	+0.4
1,819,833	-		GFF1798	0.67	+0.7
1,819,842	+		GFF1798	0.69	+0.4
1,819,852	+		GFF1798	0.71	+1.2
1,819,860	+		GFF1798	0.72	-0.6
1,819,867	-		GFF1798	0.73	-0.4
1,819,875	+		GFF1798	0.75	+0.2
1,819,875	+		GFF1798	0.75	+0.6
1,819,875	+		GFF1798	0.75	+1.3
1,819,875	+		GFF1798	0.75	-0.0
1,819,883	-		GFF1798	0.76	-1.4
1,819,888	-		GFF1798	0.77	-0.5
1,819,900	+		GFF1798	0.79	-1.7
1,819,908	-		GFF1798	0.81	+2.1
1,819,921	+		GFF1798	0.83	-0.3
1,819,922	-		GFF1798	0.84	-1.1
1,819,966	+				-1.1
1,819,984	+				+0.6
1,819,992	+				-0.7
1,819,992	-				+0.6
1,820,008	+				-1.7
1,820,008	+				+1.2
1,820,008	+				-1.1
1,820,016	-				-0.2
1,820,020	-				-0.2
1,820,021	-				-2.2
1,820,028	-				-0.6
1,820,029	+				-1.7
1,820,029	+				+0.0
1,820,037	-				+0.1
1,820,037	-				-1.2
1,820,037	-				+1.1
1,820,037	-				-1.6
1,820,050	+				-0.5
1,820,050	+				+0.2
1,820,053	-				-1.5
1,820,067	+				+0.1
1,820,072	+				-2.2
1,820,081	+				+0.6
1,820,087	+				-1.9
1,820,089	-				-0.2
1,820,094	-				-0.4
1,820,102	-				+0.2
1,820,112	-				-0.9
1,820,125	-				+0.4
1,820,136	+				-0.8
1,820,136	+				-0.7
1,820,136	+				-0.4
1,820,136	+				-0.2
1,820,138	+				+0.4
1,820,142	+				+0.6
1,820,142	+				+1.2
1,820,144	-				-0.2
1,820,179	+				-0.9
1,820,189	+				-0.4
1,820,189	+				+0.1
1,820,192	-				+0.5
1,820,192	-				-0.4
1,820,192	-				-0.8
1,820,202	+				-2.6
1,820,205	-				-1.5
1,820,207	+				+1.6
1,820,209	+				+0.6
1,820,209	+				+0.7
1,820,217	-				-0.9
1,820,217	-				-0.1
1,820,217	-				-1.6
1,820,242	+				-1.4
1,820,282	+				+0.5
1,820,282	+				-0.7
1,820,288	+				+1.0
1,820,290	-				+1.2
1,820,296	+				-0.4
1,820,296	-				-0.3
1,820,334	+				-0.4
1,820,337	+				-0.6
1,820,342	+				-1.5
1,820,342	+				-0.9
1,820,342	-				+0.8
1,820,342	-				-0.9
1,820,347	+				-0.6
1,820,347	+				-0.4
1,820,347	+				-0.4
1,820,347	+				-0.2
1,820,347	+				-0.2
1,820,347	+				-0.7
1,820,347	+				-1.5
1,820,347	+				+0.2
1,820,347	+				+0.1
1,820,355	-				+0.5
1,820,368	-				-2.5
1,820,368	-				-0.9
1,820,368	-				+0.4
1,820,368	-				+0.1
1,820,368	-				+0.9
1,820,368	-				+0.9
1,820,381	-				-0.5
1,820,381	-				+0.5
1,820,381	-				+1.3
1,820,381	-				-1.6
1,820,381	-				+0.9
1,820,381	-				-0.7
1,820,381	-				+0.2
1,820,381	-				-0.1
1,820,381	-				-0.4
1,820,381	-				+1.6
1,820,381	-				+2.4
1,820,386	+				+0.5
1,820,386	+				-0.2
1,820,389	-				-1.4
1,820,399	+				-0.4
1,820,399	+				+1.3
1,820,400	+				-0.5
1,820,412	+				+0.3
1,820,423	-				-1.5
1,820,427	-				-0.5
1,820,448	-				+0.2
1,820,452	+				-1.2
1,820,452	+				-0.6
1,820,455	-				-0.3
1,820,460	-				-0.8
1,820,460	-				-1.4
1,820,460	-				-0.9
1,820,460	-				-0.1
1,820,460	-				+0.2
1,820,465	-				-1.3
1,820,470	-				+0.1
1,820,539	-				+0.3
1,820,580	-				+0.2
1,820,580	-				+0.0
1,820,582	+				+0.0
1,820,587	+				-0.7
1,820,592	+				+0.1
1,820,601	+				-0.0
1,820,609	-				+0.7
1,820,634	-				+0.2
1,820,645	+		GFF1799	0.11	-2.4
1,820,656	+		GFF1799	0.13	-3.4
1,820,656	+		GFF1799	0.13	-0.4
1,820,657	+		GFF1799	0.13	-0.4
1,820,658	+		GFF1799	0.13	-0.1
1,820,658	+		GFF1799	0.13	-1.8
1,820,658	+		GFF1799	0.13	+0.6
1,820,658	+		GFF1799	0.13	+1.0
1,820,658	+		GFF1799	0.13	+0.6
1,820,658	+		GFF1799	0.13	-2.4
1,820,658	+		GFF1799	0.13	-0.3
1,820,658	+		GFF1799	0.13	-0.6
1,820,658	+		GFF1799	0.13	+0.5
1,820,658	+		GFF1799	0.13	-0.9
1,820,663	+		GFF1799	0.14	+0.4
1,820,664	+		GFF1799	0.14	-0.7
1,820,664	+		GFF1799	0.14	-0.9
1,820,664	+		GFF1799	0.14	-1.2
1,820,664	-		GFF1799	0.14	-1.4
1,820,666	-		GFF1799	0.14	+1.2
1,820,666	-		GFF1799	0.14	-1.0
1,820,672	-		GFF1799	0.15	-0.5
1,820,678	-		GFF1799	0.16	+0.3
1,820,682	+		GFF1799	0.17	+1.5
1,820,683	+		GFF1799	0.17	-1.0
1,820,689	-		GFF1799	0.18	-0.5
1,820,691	-		GFF1799	0.18	+0.7
1,820,691	-		GFF1799	0.18	+1.6
1,820,730	+		GFF1799	0.24	+0.9
1,820,760	+		GFF1799	0.29	-0.1
1,820,760	+		GFF1799	0.29	-1.6
1,820,779	+		GFF1799	0.32	-0.9
1,820,782	-		GFF1799	0.32	+0.1
1,820,813	+		GFF1799	0.37	-0.7
1,820,834	-		GFF1799	0.40	+0.2
1,820,840	+		GFF1799	0.41	+0.3
1,820,861	+		GFF1799	0.45	-1.7
1,820,869	-		GFF1799	0.46	-0.4
1,820,869	-		GFF1799	0.46	+0.5
1,820,906	+		GFF1799	0.52	-0.2
1,820,914	-		GFF1799	0.53	-0.2
1,820,914	-		GFF1799	0.53	-2.2
1,820,964	+		GFF1799	0.61	-1.2
1,820,972	-		GFF1799	0.62	+0.2
1,820,999	-		GFF1799	0.66	-1.1
1,821,009	+		GFF1799	0.68	-1.2
1,821,009	+		GFF1799	0.68	-1.0
1,821,009	+		GFF1799	0.68	-0.5