Strain Fitness in Sphingobium sp. HT1-2 around GFF1780

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,805,049	+		GFF1778	0.88	-1.3
1,805,056	-		GFF1778	0.88	-3.6
1,805,057	-		GFF1778	0.88	+0.2
1,805,057	-		GFF1778	0.88	-0.8
1,805,060	+		GFF1778	0.89	+0.2
1,805,060	+		GFF1778	0.89	+0.0
1,805,094	+				-0.5
1,805,094	+				-0.1
1,805,094	+				-1.2
1,805,102	-				+0.1
1,805,102	-				-0.8
1,805,102	-				-0.4
1,805,102	-				-1.6
1,805,102	-				-0.6
1,805,132	+				+0.3
1,805,132	-				-0.6
1,805,138	-				+0.7
1,805,155	+				-1.3
1,805,155	+				+0.9
1,805,166	+				-0.8
1,805,182	-				-1.4
1,805,189	+				-0.7
1,805,220	+				+0.8
1,805,249	+				+0.5
1,805,267	+				-0.8
1,805,310	+				-0.9
1,805,310	+				+0.3
1,805,317	+				-0.5
1,805,317	+				+0.7
1,805,317	+				-1.4
1,805,317	+				-0.9
1,805,317	+				-1.3
1,805,318	-				-1.3
1,805,318	-				-1.2
1,805,324	-				+0.2
1,805,325	-				-0.3
1,805,325	-				-1.1
1,805,330	-				-0.1
1,805,358	+				-0.2
1,805,358	+				+0.4
1,805,358	-				+0.6
1,805,359	+				+0.4
1,805,365	+				-1.0
1,805,366	-				-3.1
1,805,366	-				-2.6
1,805,367	-				-0.5
1,805,380	+				-1.5
1,805,385	+				-1.1
1,805,385	+				-1.0
1,805,387	+				-0.8
1,805,387	+				+0.1
1,805,387	+				-1.6
1,805,387	+				-0.1
1,805,388	-				-0.3
1,805,395	+				-0.6
1,805,395	-				-0.7
1,805,398	-				-0.4
1,805,400	+				+0.6
1,805,400	+				+0.2
1,805,400	+				-1.0
1,805,400	+				-1.4
1,805,400	+				-0.1
1,805,400	+				-0.4
1,805,400	+				+0.1
1,805,403	-				-2.3
1,805,405	+				+0.3
1,805,405	+				-1.9
1,805,405	+				-0.6
1,805,405	+				+0.3
1,805,408	-				-0.9
1,805,408	-				-0.3
1,805,408	-				-0.2
1,805,413	-				-1.0
1,805,413	-				+0.9
1,805,413	-				+0.3
1,805,413	-				+0.2
1,805,426	+		GFF1779	0.11	-0.0
1,805,431	+		GFF1779	0.11	+1.1
1,805,434	-		GFF1779	0.12	-0.4
1,805,444	-		GFF1779	0.13	-0.3
1,805,461	+		GFF1779	0.16	-1.4
1,805,461	+		GFF1779	0.16	+0.2
1,805,466	+		GFF1779	0.17	+1.0
1,805,469	-		GFF1779	0.17	+0.9
1,805,469	-		GFF1779	0.17	+0.7
1,805,474	-		GFF1779	0.18	-2.0
1,805,476	+		GFF1779	0.18	-0.9
1,805,476	+		GFF1779	0.18	+1.4
1,805,476	+		GFF1779	0.18	-1.2
1,805,480	-		GFF1779	0.19	-1.5
1,805,484	-		GFF1779	0.19	-1.8
1,805,486	+		GFF1779	0.20	-2.1
1,805,486	+		GFF1779	0.20	+1.0
1,805,491	+		GFF1779	0.20	+0.6
1,805,499	+		GFF1779	0.22	-0.5
1,805,544	+		GFF1779	0.28	-0.4
1,805,560	+		GFF1779	0.31	+0.7
1,805,572	+		GFF1779	0.32	-0.5
1,805,580	-		GFF1779	0.34	+0.7
1,805,580	-		GFF1779	0.34	+0.3
1,805,580	-		GFF1779	0.34	-0.6
1,805,606	-		GFF1779	0.38	+1.0
1,805,610	+		GFF1779	0.38	-1.4
1,805,615	+		GFF1779	0.39	-0.1
1,805,615	+		GFF1779	0.39	-0.6
1,805,615	+		GFF1779	0.39	-1.5
1,805,617	+		GFF1779	0.39	+1.1
1,805,620	+		GFF1779	0.40	+0.4
1,805,620	+		GFF1779	0.40	-0.1
1,805,628	-		GFF1779	0.41	-0.1
1,805,631	-		GFF1779	0.41	-0.9
1,805,633	+		GFF1779	0.42	-2.0
1,805,668	+		GFF1779	0.47	-0.3
1,805,668	+		GFF1779	0.47	+0.5
1,805,668	+		GFF1779	0.47	-1.6
1,805,668	+		GFF1779	0.47	-0.1
1,805,668	+		GFF1779	0.47	-0.1
1,805,668	+		GFF1779	0.47	+0.6
1,805,668	+		GFF1779	0.47	-0.4
1,805,676	-		GFF1779	0.48	-0.4
1,805,676	-		GFF1779	0.48	+0.6
1,805,676	-		GFF1779	0.48	-1.2
1,805,676	-		GFF1779	0.48	+0.2
1,805,726	+		GFF1779	0.55	-0.9
1,805,743	+		GFF1779	0.58	-1.2
1,805,747	-		GFF1779	0.59	+0.5
1,805,758	-		GFF1779	0.60	-1.5
1,805,764	-		GFF1779	0.61	+0.5
1,805,780	-		GFF1779	0.64	-0.5
1,805,803	+		GFF1779	0.67	+0.5
1,805,811	-		GFF1779	0.68	+1.0
1,805,819	-		GFF1779	0.69	-0.3
1,805,865	+		GFF1779	0.76	-1.9
1,805,873	-		GFF1779	0.77	+0.1
1,805,873	-		GFF1779	0.77	-1.0
1,805,873	-		GFF1779	0.77	-0.4
1,805,873	-		GFF1779	0.77	-0.4
1,805,875	+		GFF1779	0.78	-0.4
1,805,878	-		GFF1779	0.78	-1.3
1,805,900	+		GFF1779	0.81	+0.1
1,805,902	-		GFF1779	0.82	-0.5
1,805,902	-		GFF1779	0.82	+0.1
1,805,908	-		GFF1779	0.83	-1.5
1,805,913	-		GFF1779	0.83	-0.6
1,805,919	+		GFF1779	0.84	-2.2
1,805,926	+		GFF1779	0.85	-0.8
1,805,946	-		GFF1779	0.88	-0.6
1,805,959	-				-0.2
1,805,964	+				-1.0
1,805,975	+				+0.0
1,805,983	-				+0.8
1,805,993	+				-1.0
1,806,008	-				-0.1
1,806,008	-				+0.2
1,806,010	+				-0.3
1,806,016	+				-0.4
1,806,018	-				+0.9
1,806,024	-				+0.2
1,806,024	-				-0.8
1,806,024	-				-0.9
1,806,036	+				+0.2
1,806,041	+				-2.3
1,806,041	+				-0.4
1,806,041	+				+0.4
1,806,041	+				+0.5
1,806,041	-				-0.5
1,806,044	-				-1.9
1,806,049	-				+0.5
1,806,049	-				+0.6
1,806,049	-				+0.6
1,806,049	-				+1.0
1,806,049	-				+0.6
1,806,049	-				-0.1
1,806,049	-				-0.9
1,806,049	-				-0.3
1,806,054	-				+0.8
1,806,059	-		GFF1780	0.10	-0.3
1,806,061	-		GFF1780	0.11	+0.1
1,806,103	-		GFF1780	0.24	-0.5
1,806,152	+		GFF1780	0.38	+0.6
1,806,152	+		GFF1780	0.38	-0.7
1,806,152	+		GFF1780	0.38	+0.6
1,806,152	+		GFF1780	0.38	+0.7
1,806,152	+		GFF1780	0.38	-1.1
1,806,152	+		GFF1780	0.38	+0.3
1,806,152	+		GFF1780	0.38	-1.7
1,806,154	+		GFF1780	0.39	+0.4
1,806,160	-		GFF1780	0.41	+0.0
1,806,160	-		GFF1780	0.41	-1.4
1,806,160	-		GFF1780	0.41	-1.1
1,806,169	+		GFF1780	0.44	-0.0
1,806,176	+		GFF1780	0.46	-0.2
1,806,177	-		GFF1780	0.46	-0.3
1,806,192	+		GFF1780	0.51	-0.3
1,806,192	+		GFF1780	0.51	-1.0
1,806,203	+		GFF1780	0.54	-2.7
1,806,203	+		GFF1780	0.54	-0.5
1,806,211	-		GFF1780	0.56	-1.9
1,806,211	-		GFF1780	0.56	+0.2
1,806,211	-		GFF1780	0.56	+0.5
1,806,211	-		GFF1780	0.56	-1.2
1,806,211	-		GFF1780	0.56	-1.1
1,806,211	-		GFF1780	0.56	+0.8
1,806,211	-		GFF1780	0.56	-0.6
1,806,213	+		GFF1780	0.57	-0.5
1,806,221	-		GFF1780	0.59	-1.4
1,806,221	-		GFF1780	0.59	+0.5
1,806,232	-		GFF1780	0.63	+0.8
1,806,337	-				-0.5
1,806,337	-				-0.7
1,806,337	-				-0.2
1,806,337	-				-0.5
1,806,384	+				-0.7
1,806,392	-				-0.7
1,806,395	-				-0.0
1,806,431	+		GFF1781	0.14	+0.2
1,806,443	+		GFF1781	0.17	+0.8
1,806,445	-		GFF1781	0.18	-0.5
1,806,471	+		GFF1781	0.23	+0.2
1,806,473	+		GFF1781	0.24	+1.0
1,806,473	+		GFF1781	0.24	-3.2
1,806,473	+		GFF1781	0.24	+0.2
1,806,473	+		GFF1781	0.24	-0.2
1,806,473	+		GFF1781	0.24	+0.9
1,806,479	-		GFF1781	0.25	-1.5
1,806,481	-		GFF1781	0.26	-1.1
1,806,481	-		GFF1781	0.26	-0.4
1,806,481	-		GFF1781	0.26	+0.7
1,806,481	-		GFF1781	0.26	+0.6
1,806,481	-		GFF1781	0.26	+0.5
1,806,481	-		GFF1781	0.26	-0.7
1,806,481	-		GFF1781	0.26	+0.7
1,806,481	-		GFF1781	0.26	-1.0
1,806,481	-		GFF1781	0.26	+1.0
1,806,481	-		GFF1781	0.26	-0.9
1,806,501	+		GFF1781	0.30	+0.5
1,806,501	+		GFF1781	0.30	-1.0
1,806,503	-		GFF1781	0.31	-0.1
1,806,505	-		GFF1781	0.31	-0.2
1,806,508	+		GFF1781	0.32	-0.5
1,806,508	+		GFF1781	0.32	+0.6
1,806,516	-		GFF1781	0.34	-0.7
1,806,570	+		GFF1781	0.46	-2.0
1,806,571	-		GFF1781	0.46	+1.6
1,806,576	+		GFF1781	0.47	+0.0
1,806,578	-		GFF1781	0.48	-0.6
1,806,591	+		GFF1781	0.50	-0.4
1,806,599	-		GFF1781	0.52	-0.1
1,806,628	-		GFF1781	0.59	-2.2
1,806,628	-		GFF1781	0.59	+0.6
1,806,664	-		GFF1781	0.67	-0.4
1,806,664	-		GFF1781	0.67	-1.5
1,806,664	-		GFF1781	0.67	-1.0
1,806,702	-		GFF1781	0.75	+0.3
1,806,703	+		GFF1781	0.76	+0.5
1,806,706	-		GFF1781	0.76	-1.0
1,806,711	+		GFF1781	0.77	-1.5
1,806,716	-		GFF1781	0.79	+1.0
1,806,719	-		GFF1781	0.79	-3.4
1,806,721	+		GFF1781	0.80	+0.2
1,806,724	-		GFF1781	0.80	-0.8
1,806,726	+		GFF1781	0.81	+0.1
1,806,726	+		GFF1781	0.81	-0.9
1,806,729	-		GFF1781	0.82	-2.5
1,806,744	-		GFF1781	0.85	-2.6
1,806,776	+				-0.7
1,806,783	-				+0.6
1,806,784	-				+0.4
1,806,786	+				+0.1
1,806,786	+				-0.8
1,806,795	+				+0.6
1,806,805	+				-1.8
1,806,806	+				-0.4
1,806,811	+				-0.7
1,806,811	+				-1.2
1,806,811	+				-0.1
1,806,819	-				+1.0
1,806,820	+				+0.5
1,806,824	-				-0.0
1,806,838	-				+0.9
1,806,855	-		GFF1782	0.15	+0.3
1,806,855	-		GFF1782	0.15	-0.0
1,806,865	-		GFF1782	0.18	-0.5
1,806,881	+		GFF1782	0.23	+0.7
1,806,881	-		GFF1782	0.23	+0.4
1,806,883	+		GFF1782	0.24	-1.5
1,806,980	+		GFF1782	0.54	+1.1
1,806,980	+		GFF1782	0.54	-0.7
1,806,988	-		GFF1782	0.56	+0.2
1,807,020	-		GFF1782	0.66	+0.5
1,807,030	+		GFF1782	0.69	-1.0
1,807,030	+		GFF1782	0.69	-1.4
1,807,038	-		GFF1782	0.72	-0.5
1,807,055	-		GFF1782	0.77	-0.9
1,807,055	-		GFF1782	0.77	-0.2
1,807,069	+		GFF1782	0.82	-0.3
1,807,071	+		GFF1782	0.82	-1.5
1,807,076	+		GFF1782	0.84	-0.3
1,807,084	+		GFF1782	0.86	-0.5
1,807,084	+		GFF1782	0.86	+0.8
1,807,084	-		GFF1782	0.86	-0.8
1,807,084	-		GFF1782	0.86	-0.7
1,807,092	-		GFF1782	0.89	+0.1
1,807,092	-		GFF1782	0.89	+0.1
1,807,092	-		GFF1782	0.89	+0.3
1,807,129	-				-1.8
1,807,133	+				-1.1
1,807,139	+				-0.9
1,807,142	-				-2.1
1,807,147	-				+0.2
1,807,147	-				-1.9
1,807,147	-				-0.6
1,807,161	+				-0.1
1,807,161	+				-0.3
1,807,164	-				-1.7
1,807,164	-				-2.2
1,807,169	-				-0.1
1,807,169	-				+1.3
1,807,169	-				-2.7
1,807,169	-				-0.2
1,807,185	-				-0.1
1,807,193	-		GFF1783	0.12	-0.8
1,807,216	-		GFF1783	0.26	-0.8
1,807,250	+		GFF1783	0.46	+0.3
1,807,250	+		GFF1783	0.46	-0.1
1,807,250	+		GFF1783	0.46	-0.3
1,807,253	-		GFF1783	0.48	-1.5
1,807,258	-		GFF1783	0.51	-0.2
1,807,267	+		GFF1783	0.56	-0.0
1,807,277	+		GFF1783	0.62	-0.9
1,807,284	+		GFF1783	0.66	+0.8
1,807,293	-		GFF1783	0.71	-0.3
1,807,293	-		GFF1783	0.71	+0.8
1,807,314	+		GFF1783	0.84	-1.9
1,807,319	-		GFF1783	0.87	-0.1
1,807,321	+		GFF1783	0.88	-0.8
1,807,321	+		GFF1783	0.88	+0.4
1,807,321	+		GFF1783	0.88	-0.9
1,807,321	+		GFF1783	0.88	+0.1
1,807,321	+		GFF1783	0.88	-0.9
1,807,321	+		GFF1783	0.88	+0.5
1,807,321	+		GFF1783	0.88	-0.4
1,807,321	+		GFF1783	0.88	-0.5
1,807,325	+				+1.0
1,807,329	-				+1.1
1,807,329	-				+0.7
1,807,334	-				-0.4
1,807,335	+				-0.2
1,807,335	+				+0.7
1,807,342	-				-0.7
1,807,345	+				-0.3
1,807,353	-				-0.8
1,807,353	-				-2.3
1,807,353	-				-0.4