Strain Fitness in Sphingobium sp. HT1-2 around GFF1677

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,706,000	+				+0.9
1,706,000	+				-1.8
1,706,000	+				+0.5
1,706,008	-				+1.3
1,706,008	-				+0.8
1,706,008	-				+0.1
1,706,033	+				+0.1
1,706,035	+				-1.5
1,706,035	+				-0.6
1,706,043	-				-0.9
1,706,044	+				-0.1
1,706,052	-				+0.1
1,706,063	+				+0.7
1,706,071	-				-0.8
1,706,071	-				+0.0
1,706,071	-				-0.5
1,706,186	+				-1.3
1,706,204	-				-1.5
1,706,213	+				+0.5
1,706,219	+				-1.0
1,706,219	+				+0.0
1,706,219	+				+0.7
1,706,219	+				+0.6
1,706,219	+				-1.9
1,706,219	+				-0.3
1,706,219	+				+0.5
1,706,221	-				+1.0
1,706,223	+				-0.1
1,706,236	+				+1.0
1,706,236	+				+0.3
1,706,244	-				+0.5
1,706,244	-				+0.5
1,706,244	-				-0.6
1,706,244	-				-0.5
1,706,254	-				-1.4
1,706,257	+				-0.6
1,706,257	+				+1.5
1,706,257	+				+0.1
1,706,257	+				+0.8
1,706,265	-				-0.1
1,706,299	-				+0.5
1,706,330	-		GFF1677	0.11	-1.3
1,706,363	+		GFF1677	0.14	-1.6
1,706,363	+		GFF1677	0.14	-0.4
1,706,371	-		GFF1677	0.15	-1.0
1,706,371	-		GFF1677	0.15	-0.5
1,706,371	-		GFF1677	0.15	+0.5
1,706,371	-		GFF1677	0.15	+0.6
1,706,393	+		GFF1677	0.18	-0.2
1,706,422	+		GFF1677	0.20	+0.7
1,706,422	+		GFF1677	0.20	+0.4
1,706,430	-		GFF1677	0.21	-1.5
1,706,437	-		GFF1677	0.22	+0.0
1,706,439	+		GFF1677	0.22	-0.2
1,706,444	+		GFF1677	0.23	-2.2
1,706,447	-		GFF1677	0.23	+0.9
1,706,447	-		GFF1677	0.23	-1.0
1,706,452	-		GFF1677	0.24	+0.8
1,706,452	-		GFF1677	0.24	+0.6
1,706,452	-		GFF1677	0.24	+0.0
1,706,465	+		GFF1677	0.25	+0.9
1,706,482	-		GFF1677	0.27	-2.5
1,706,483	-		GFF1677	0.27	-2.1
1,706,501	-		GFF1677	0.29	+0.7
1,706,514	-		GFF1677	0.30	+0.5
1,706,521	-		GFF1677	0.31	-0.7
1,706,538	-		GFF1677	0.32	+1.3
1,706,556	+		GFF1677	0.34	+0.4
1,706,562	+		GFF1677	0.35	-1.0
1,706,564	-		GFF1677	0.35	+0.0
1,706,564	-		GFF1677	0.35	+0.2
1,706,583	-		GFF1677	0.37	-0.0
1,706,613	+		GFF1677	0.40	-0.1
1,706,628	-		GFF1677	0.41	-0.1
1,706,646	-		GFF1677	0.43	+0.2
1,706,652	+		GFF1677	0.44	+0.6
1,706,653	+		GFF1677	0.44	-0.7
1,706,662	+		GFF1677	0.45	-0.1
1,706,662	+		GFF1677	0.45	-0.4
1,706,665	-		GFF1677	0.45	+0.7
1,706,670	+		GFF1677	0.46	-1.3
1,706,670	+		GFF1677	0.46	+0.0
1,706,670	+		GFF1677	0.46	+0.0
1,706,670	-		GFF1677	0.46	+1.3
1,706,683	-		GFF1677	0.47	+0.4
1,706,708	+		GFF1677	0.50	+0.4
1,706,709	-		GFF1677	0.50	+0.5
1,706,717	+		GFF1677	0.51	+1.5
1,706,782	+		GFF1677	0.57	-1.7
1,706,787	+		GFF1677	0.58	-0.0
1,706,824	+		GFF1677	0.61	-0.4
1,706,824	+		GFF1677	0.61	+0.5
1,706,826	+		GFF1677	0.62	-0.3
1,706,838	-		GFF1677	0.63	-0.6
1,706,890	-		GFF1677	0.68	-0.3
1,706,898	+		GFF1677	0.69	-0.2
1,706,900	+		GFF1677	0.69	+0.7
1,706,908	-		GFF1677	0.70	+0.3
1,706,936	+		GFF1677	0.73	-0.3
1,706,941	+		GFF1677	0.73	-0.3
1,706,941	+		GFF1677	0.73	-1.8
1,706,974	+		GFF1677	0.77	-0.5
1,707,006	+		GFF1677	0.80	-0.7
1,707,006	+		GFF1677	0.80	+0.2
1,707,006	+		GFF1677	0.80	+1.3
1,707,006	+		GFF1677	0.80	+0.7
1,707,014	-		GFF1677	0.81	+1.0
1,707,014	-		GFF1677	0.81	+0.7
1,707,014	-		GFF1677	0.81	-1.7
1,707,014	-		GFF1677	0.81	-0.7
1,707,042	+		GFF1677	0.84	+0.3
1,707,042	+		GFF1677	0.84	-0.5
1,707,050	-		GFF1677	0.85	+0.5
1,707,050	-		GFF1677	0.85	-0.5
1,707,050	-		GFF1677	0.85	+0.2
1,707,050	-		GFF1677	0.85	-0.1
1,707,055	-		GFF1677	0.85	-0.4
1,707,066	+		GFF1677	0.86	-0.2
1,707,075	-		GFF1677	0.87	+1.5
1,707,082	+		GFF1677	0.88	-0.2
1,707,083	+		GFF1677	0.88	-1.8
1,707,090	-		GFF1677	0.89	+1.4
1,707,090	-		GFF1677	0.89	-1.3
1,707,091	+		GFF1677	0.89	+1.7
1,707,092	+		GFF1677	0.89	-2.2
1,707,092	+		GFF1677	0.89	-0.1
1,707,099	-		GFF1677	0.90	+0.4
1,707,100	-		GFF1677	0.90	-0.4
1,707,100	-		GFF1677	0.90	+1.2
1,707,153	-				+0.3
1,707,153	-				+0.1
1,707,154	-				-0.7
1,707,185	+				+0.5
1,707,185	+				-1.0
1,707,193	-				-0.3
1,707,195	+				-0.6
1,707,196	+				-0.3
1,707,202	+				-0.3
1,707,202	+				+0.8
1,707,202	+				+1.1
1,707,202	+				-1.3
1,707,203	-				-1.0
1,707,210	-				-0.1
1,707,210	-				-0.4
1,707,212	-				+1.4
1,707,219	-				-0.0
1,707,238	+				-1.0
1,707,238	+				+0.0
1,707,244	-		GFF1678	0.12	-3.3
1,707,246	-		GFF1678	0.12	+1.0
1,707,321	+		GFF1678	0.35	+0.6
1,707,329	+		GFF1678	0.37	+1.0
1,707,329	-		GFF1678	0.37	+0.9
1,707,334	-		GFF1678	0.38	-0.2
1,707,372	+		GFF1678	0.50	+0.3
1,707,409	+		GFF1678	0.61	-1.5
1,707,409	+		GFF1678	0.61	-0.6
1,707,417	-		GFF1678	0.63	+0.3
1,707,458	+		GFF1678	0.75	-0.4
1,707,460	+		GFF1678	0.76	-0.1
1,707,466	-		GFF1678	0.78	+0.5
1,707,476	-		GFF1678	0.81	-1.4
1,707,508	-				+0.6
1,707,520	+				-0.7
1,707,523	-				-0.8
1,707,528	-				-0.0
1,707,542	-				-0.1
1,707,542	-				-1.0
1,707,547	-				-0.7
1,707,552	-				+0.0
1,707,558	+				+1.8
1,707,579	-				-0.0
1,707,588	+				-1.4
1,707,590	+				-0.1
1,707,590	+				-2.3
1,707,610	+				-1.5
1,707,610	+				-1.6
1,707,610	+				-1.9
1,707,614	-				+0.9
1,707,618	-				-1.7
1,707,635	-				-0.8
1,707,637	+				-2.3
1,707,637	+				-1.1
1,707,646	-				-2.1
1,707,682	-		GFF1679	0.11	-1.4
1,707,682	-		GFF1679	0.11	-2.1
1,707,690	-		GFF1679	0.12	-0.6
1,707,692	+		GFF1679	0.12	-1.7
1,707,697	+		GFF1679	0.13	-1.5
1,707,700	-		GFF1679	0.13	-1.5
1,707,705	-		GFF1679	0.13	-1.0
1,707,705	-		GFF1679	0.13	-1.4
1,707,710	-		GFF1679	0.14	-2.0
1,707,710	-		GFF1679	0.14	-1.4
1,707,710	-		GFF1679	0.14	-0.5
1,707,710	-		GFF1679	0.14	-0.1
1,707,720	-		GFF1679	0.15	-1.9
1,707,720	-		GFF1679	0.15	-0.5
1,707,720	-		GFF1679	0.15	-1.7
1,707,793	-		GFF1679	0.21	-1.7
1,707,827	-		GFF1679	0.25	-1.6
1,707,837	+		GFF1679	0.25	-2.5
1,707,837	+		GFF1679	0.25	-0.8
1,707,839	+		GFF1679	0.26	-0.5
1,707,847	-		GFF1679	0.26	-1.8
1,707,880	-		GFF1679	0.29	-2.3
1,707,880	-		GFF1679	0.29	-2.1
1,707,880	-		GFF1679	0.29	-1.8
1,707,880	-		GFF1679	0.29	-1.7
1,707,882	-		GFF1679	0.30	-1.4
1,707,909	+		GFF1679	0.32	-0.9
1,707,909	+		GFF1679	0.32	-1.9
1,707,917	-		GFF1679	0.33	-3.5
1,707,917	-		GFF1679	0.33	-0.5
1,707,917	-		GFF1679	0.33	-0.5
1,707,943	+		GFF1679	0.35	-2.0
1,707,943	+		GFF1679	0.35	-2.8
1,707,951	-		GFF1679	0.36	-2.0
1,707,975	+		GFF1679	0.38	-2.5
1,707,975	+		GFF1679	0.38	-2.2
1,707,975	+		GFF1679	0.38	-0.4
1,707,998	-		GFF1679	0.40	-1.0
1,708,000	-		GFF1679	0.40	-1.7
1,708,026	+		GFF1679	0.43	-0.0
1,708,029	-		GFF1679	0.43	-0.8
1,708,061	+		GFF1679	0.46	-1.8
1,708,069	-		GFF1679	0.47	-1.3
1,708,109	-		GFF1679	0.50	-2.5
1,708,111	+		GFF1679	0.51	-2.3
1,708,119	-		GFF1679	0.51	-1.3
1,708,119	-		GFF1679	0.51	-2.2
1,708,119	-		GFF1679	0.51	-0.7
1,708,131	+		GFF1679	0.52	-1.9
1,708,136	+		GFF1679	0.53	-1.4
1,708,136	+		GFF1679	0.53	+0.2
1,708,136	+		GFF1679	0.53	-2.1
1,708,136	+		GFF1679	0.53	-0.4
1,708,136	+		GFF1679	0.53	-1.4
1,708,136	+		GFF1679	0.53	-1.5
1,708,136	+		GFF1679	0.53	-2.1
1,708,136	+		GFF1679	0.53	-1.8
1,708,136	+		GFF1679	0.53	-1.1
1,708,136	+		GFF1679	0.53	-2.0
1,708,136	+		GFF1679	0.53	-2.5
1,708,136	+		GFF1679	0.53	-2.1
1,708,136	+		GFF1679	0.53	-2.0
1,708,136	+		GFF1679	0.53	-0.2
1,708,136	+		GFF1679	0.53	-0.4
1,708,139	-		GFF1679	0.53	-1.8
1,708,144	-		GFF1679	0.54	-2.5
1,708,144	-		GFF1679	0.54	+0.7
1,708,144	-		GFF1679	0.54	-0.8
1,708,144	-		GFF1679	0.54	-1.4
1,708,144	-		GFF1679	0.54	-2.2
1,708,144	-		GFF1679	0.54	-2.3
1,708,144	-		GFF1679	0.54	-2.0
1,708,144	-		GFF1679	0.54	-3.0
1,708,144	-		GFF1679	0.54	-1.5
1,708,144	-		GFF1679	0.54	-2.8
1,708,144	-		GFF1679	0.54	-0.1
1,708,144	-		GFF1679	0.54	-1.5
1,708,144	-		GFF1679	0.54	-1.2
1,708,144	-		GFF1679	0.54	-1.8
1,708,144	-		GFF1679	0.54	-1.8
1,708,144	-		GFF1679	0.54	-1.4
1,708,144	-		GFF1679	0.54	-0.8
1,708,144	-		GFF1679	0.54	-0.1
1,708,144	-		GFF1679	0.54	-2.0
1,708,144	-		GFF1679	0.54	-1.8
1,708,144	-		GFF1679	0.54	-1.1
1,708,144	-		GFF1679	0.54	-1.8
1,708,146	+		GFF1679	0.54	-1.6
1,708,160	-		GFF1679	0.55	-1.4
1,708,173	+		GFF1679	0.56	-1.0
1,708,178	+		GFF1679	0.57	-1.8
1,708,201	-		GFF1679	0.59	-1.8