Strain Fitness in Sphingobium sp. HT1-2 around GFF1650

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,674,606	+				-0.8
1,674,611	-				-0.7
1,674,631	+				+1.0
1,674,646	+				-0.2
1,674,674	-				-1.8
1,674,675	+				+0.4
1,674,675	+				-0.1
1,674,675	+				+0.5
1,674,675	+				+0.4
1,674,675	+				-2.4
1,674,675	+				-1.7
1,674,675	+				-1.1
1,674,683	-				+0.8
1,674,722	-		GFF1648	0.19	-0.5
1,674,731	+		GFF1648	0.22	+1.0
1,674,739	-		GFF1648	0.24	+0.5
1,674,786	-		GFF1648	0.41	+0.6
1,674,786	-		GFF1648	0.41	+0.1
1,674,800	-		GFF1648	0.45	-0.7
1,674,802	+		GFF1648	0.46	-0.2
1,674,818	+		GFF1648	0.52	-2.5
1,674,818	+		GFF1648	0.52	+0.2
1,674,833	+		GFF1648	0.57	-0.3
1,674,841	-		GFF1648	0.59	+0.6
1,674,846	-		GFF1648	0.61	+0.0
1,674,847	-		GFF1648	0.62	-0.8
1,674,872	-		GFF1648	0.70	-0.6
1,674,903	+		GFF1648	0.81	+0.9
1,674,903	+		GFF1648	0.81	+1.3
1,674,903	+		GFF1648	0.81	+0.0
1,674,903	+		GFF1648	0.81	-0.4
1,674,903	+		GFF1648	0.81	+1.6
1,674,903	+		GFF1648	0.81	-1.4
1,674,940	+				-1.7
1,674,946	+				+1.3
1,674,955	-				+0.7
1,674,965	-				+0.5
1,674,973	-				-0.9
1,674,987	+				+0.2
1,674,992	+				+0.7
1,674,992	+				-0.1
1,675,120	+				-1.5
1,675,125	+				-1.0
1,675,125	+				+0.9
1,675,125	+				-0.6
1,675,125	+				-0.0
1,675,125	+				-0.1
1,675,133	-				+1.0
1,675,133	-				+0.4
1,675,133	-				-0.3
1,675,133	-				-1.3
1,675,133	-				-0.0
1,675,133	-				-0.7
1,675,133	-				+0.9
1,675,164	+		GFF1650	0.18	+0.7
1,675,164	+		GFF1650	0.18	+1.4
1,675,164	+		GFF1650	0.18	+0.0
1,675,192	+		GFF1650	0.27	+0.9
1,675,193	+		GFF1650	0.28	-1.3
1,675,193	+		GFF1650	0.28	-0.7
1,675,197	-		GFF1650	0.29	+0.2
1,675,198	+		GFF1650	0.29	-2.0
1,675,201	-		GFF1650	0.30	+1.6
1,675,201	-		GFF1650	0.30	-0.5
1,675,224	-		GFF1650	0.38	-0.4
1,675,225	-		GFF1650	0.38	-0.5
1,675,262	+		GFF1650	0.51	-1.3
1,675,262	+		GFF1650	0.51	-0.4
1,675,307	+		GFF1650	0.66	-0.1
1,675,317	-		GFF1650	0.69	+0.0
1,675,324	+		GFF1650	0.71	-0.0
1,675,324	+		GFF1650	0.71	-0.1
1,675,324	+		GFF1650	0.71	-0.2
1,675,328	+		GFF1650	0.73	+0.9
1,675,331	-		GFF1650	0.74	-0.9
1,675,331	-		GFF1650	0.74	+0.5
1,675,332	-		GFF1650	0.74	-0.5
1,675,334	+		GFF1650	0.75	+0.1
1,675,334	+		GFF1650	0.75	+0.3
1,675,341	-		GFF1650	0.77	+0.2
1,675,342	-		GFF1650	0.77	-1.6
1,675,342	-		GFF1650	0.77	-0.6
1,675,342	-		GFF1650	0.77	-1.0
1,675,342	-		GFF1650	0.77	-1.2
1,675,342	-		GFF1650	0.77	-0.1
1,675,350	+		GFF1650	0.80	-0.7
1,675,350	+		GFF1650	0.80	-2.7
1,675,353	-		GFF1650	0.81	+0.3
1,675,358	-		GFF1650	0.83	-1.4
1,675,358	-		GFF1650	0.83	+0.6
1,675,358	-		GFF1650	0.83	-0.5
1,675,358	-		GFF1650	0.83	+0.4
1,675,363	-		GFF1650	0.84	-0.5
1,675,366	+		GFF1650	0.85	-2.1
1,675,369	-		GFF1650	0.86	-0.8
1,675,369	-		GFF1650	0.86	+0.6
1,675,371	+		GFF1650	0.87	-1.0
1,675,413	+				-1.2
1,675,420	-				-1.4
1,675,423	+				-1.7
1,675,510	+				-0.5
1,675,514	+				-0.4
1,675,519	+				-0.9
1,675,522	-				-0.2
1,675,564	+				-1.5
1,675,605	-				-2.0
1,675,646	+				-1.6
1,675,656	+				-2.0
1,675,656	+				-2.0
1,675,656	+				-0.8
1,675,656	+				-1.7
1,675,659	-				-2.0
1,675,661	+				-1.9
1,675,664	-				+0.3
1,675,688	+				+0.0
1,675,723	-				-2.5
1,675,749	-				-2.7
1,675,836	+		GFF1651	0.13	-0.7
1,675,854	-		GFF1651	0.14	-0.4
1,675,855	+		GFF1651	0.15	-2.5
1,675,860	+		GFF1651	0.15	-2.8
1,675,863	-		GFF1651	0.15	-1.4
1,675,896	+		GFF1651	0.17	-0.3
1,675,906	+		GFF1651	0.17	-2.3
1,675,923	+		GFF1651	0.18	-0.9
1,675,936	-		GFF1651	0.19	-2.4
1,675,936	-		GFF1651	0.19	-2.6
1,675,948	+		GFF1651	0.20	-1.8
1,675,953	+		GFF1651	0.20	-1.6
1,675,962	+		GFF1651	0.21	-1.5
1,675,993	+		GFF1651	0.22	-0.3
1,675,999	+		GFF1651	0.23	-1.9
1,675,999	+		GFF1651	0.23	-3.3
1,675,999	+		GFF1651	0.23	-0.5
1,675,999	+		GFF1651	0.23	-0.7
1,675,999	+		GFF1651	0.23	-0.2
1,675,999	+		GFF1651	0.23	-1.4
1,675,999	+		GFF1651	0.23	-1.5
1,675,999	+		GFF1651	0.23	-1.0
1,675,999	+		GFF1651	0.23	-0.8
1,676,001	-		GFF1651	0.23	+0.1
1,676,004	+		GFF1651	0.23	-1.2
1,676,005	+		GFF1651	0.23	-0.5
1,676,005	+		GFF1651	0.23	-2.9
1,676,005	+		GFF1651	0.23	-2.1
1,676,005	+		GFF1651	0.23	-2.3
1,676,005	+		GFF1651	0.23	-2.0
1,676,005	+		GFF1651	0.23	-0.3
1,676,005	+		GFF1651	0.23	-2.0
1,676,006	-		GFF1651	0.23	-2.7
1,676,007	-		GFF1651	0.23	-0.3
1,676,007	-		GFF1651	0.23	-2.5
1,676,007	-		GFF1651	0.23	-0.1
1,676,007	-		GFF1651	0.23	-1.4
1,676,007	-		GFF1651	0.23	-1.4
1,676,010	+		GFF1651	0.23	-0.3
1,676,010	+		GFF1651	0.23	-1.0
1,676,013	-		GFF1651	0.23	-0.6
1,676,013	-		GFF1651	0.23	-0.8
1,676,013	-		GFF1651	0.23	-0.1
1,676,015	+		GFF1651	0.23	-0.7
1,676,015	+		GFF1651	0.23	-1.7
1,676,015	+		GFF1651	0.23	-2.9
1,676,015	+		GFF1651	0.23	-1.0
1,676,015	+		GFF1651	0.23	-0.8
1,676,015	+		GFF1651	0.23	-0.7
1,676,015	+		GFF1651	0.23	-1.1
1,676,018	-		GFF1651	0.24	-1.5
1,676,018	-		GFF1651	0.24	-0.9
1,676,018	-		GFF1651	0.24	-1.1
1,676,023	-		GFF1651	0.24	-1.7
1,676,023	-		GFF1651	0.24	-1.0
1,676,023	-		GFF1651	0.24	-3.0
1,676,023	-		GFF1651	0.24	-1.0
1,676,023	-		GFF1651	0.24	-1.1
1,676,050	-		GFF1651	0.25	-0.3
1,676,090	+		GFF1651	0.28	-2.1
1,676,120	+		GFF1651	0.29	+0.0
1,676,140	+		GFF1651	0.30	-0.2
1,676,146	-		GFF1651	0.31	-1.1
1,676,148	+		GFF1651	0.31	-2.5
1,676,148	+		GFF1651	0.31	-2.6
1,676,148	+		GFF1651	0.31	-2.1
1,676,155	-		GFF1651	0.31	+0.0
1,676,158	+		GFF1651	0.31	-0.7
1,676,183	+		GFF1651	0.33	-1.9
1,676,195	+		GFF1651	0.34	-1.1
1,676,195	+		GFF1651	0.34	-0.1
1,676,195	+		GFF1651	0.34	-2.1
1,676,195	+		GFF1651	0.34	-2.6
1,676,195	+		GFF1651	0.34	-2.5
1,676,195	+		GFF1651	0.34	-1.5
1,676,195	+		GFF1651	0.34	-1.5
1,676,195	+		GFF1651	0.34	-0.7
1,676,195	+		GFF1651	0.34	-1.7
1,676,195	+		GFF1651	0.34	-2.1
1,676,195	+		GFF1651	0.34	-0.7
1,676,195	+		GFF1651	0.34	-1.8
1,676,195	+		GFF1651	0.34	-0.1
1,676,195	+		GFF1651	0.34	-2.3
1,676,195	+		GFF1651	0.34	-2.0
1,676,195	+		GFF1651	0.34	-2.1
1,676,195	+		GFF1651	0.34	-1.4
1,676,195	+		GFF1651	0.34	-2.5
1,676,195	+		GFF1651	0.34	-1.5
1,676,203	-		GFF1651	0.34	-3.2
1,676,203	-		GFF1651	0.34	-0.8
1,676,203	-		GFF1651	0.34	-1.9
1,676,203	-		GFF1651	0.34	-0.5
1,676,203	-		GFF1651	0.34	+1.2
1,676,203	-		GFF1651	0.34	-1.2
1,676,203	-		GFF1651	0.34	-1.2
1,676,203	-		GFF1651	0.34	-1.8
1,676,203	-		GFF1651	0.34	-1.3
1,676,203	-		GFF1651	0.34	-1.2
1,676,203	-		GFF1651	0.34	+0.2
1,676,203	-		GFF1651	0.34	-2.7
1,676,203	-		GFF1651	0.34	-2.8
1,676,203	-		GFF1651	0.34	-2.0
1,676,203	-		GFF1651	0.34	-0.3
1,676,205	+		GFF1651	0.34	-1.7
1,676,205	+		GFF1651	0.34	-1.3
1,676,213	-		GFF1651	0.35	-0.7
1,676,213	-		GFF1651	0.35	+0.6
1,676,213	-		GFF1651	0.35	-1.4
1,676,231	-		GFF1651	0.36	-1.3
1,676,251	+		GFF1651	0.37	-0.2
1,676,292	-		GFF1651	0.39	+0.1
1,676,302	+		GFF1651	0.40	-2.4
1,676,322	+		GFF1651	0.41	-1.5
1,676,322	+		GFF1651	0.41	-2.0
1,676,334	-		GFF1651	0.41	-1.1
1,676,342	+		GFF1651	0.42	-1.5
1,676,357	+		GFF1651	0.43	-0.7
1,676,376	+		GFF1651	0.44	-0.6
1,676,385	+		GFF1651	0.44	-0.3