Strain Fitness in Sphingobium sp. HT1-2 around GFF1636

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,663,201	+		GFF1634	0.76	-2.0
1,663,201	+		GFF1634	0.76	-1.4
1,663,201	-		GFF1634	0.76	-1.8
1,663,216	+		GFF1634	0.77	-1.4
1,663,239	-		GFF1634	0.79	+0.1
1,663,249	-		GFF1634	0.79	-0.5
1,663,253	+		GFF1634	0.80	+0.2
1,663,284	-		GFF1634	0.82	-1.9
1,663,292	+		GFF1634	0.82	-2.2
1,663,295	-		GFF1634	0.83	-0.1
1,663,311	-		GFF1634	0.84	-0.7
1,663,311	-		GFF1634	0.84	-0.5
1,663,339	+		GFF1634	0.86	-0.1
1,663,339	+		GFF1634	0.86	-1.0
1,663,339	+		GFF1634	0.86	-0.2
1,663,339	+		GFF1634	0.86	-1.5
1,663,345	+		GFF1634	0.86	+1.0
1,663,356	+		GFF1634	0.87	+0.3
1,663,379	-		GFF1634	0.89	-0.5
1,663,381	+		GFF1634	0.89	-0.4
1,663,381	+		GFF1634	0.89	+0.7
1,663,424	-				-0.1
1,663,426	+				-0.1
1,663,426	+				-0.4
1,663,434	-				+0.1
1,663,434	-				-0.7
1,663,462	-				-0.3
1,663,483	+				-0.8
1,663,483	+				-0.5
1,663,483	+				-0.2
1,663,488	+				-0.8
1,663,491	-				-0.6
1,663,491	-				-0.3
1,663,491	-				-0.1
1,663,510	-				-1.7
1,663,544	+				-0.8
1,663,579	+				+0.8
1,663,579	+				+0.3
1,663,598	+		GFF1635	0.12	-0.4
1,663,644	+		GFF1635	0.21	+0.6
1,663,652	-		GFF1635	0.22	-0.7
1,663,669	-		GFF1635	0.25	+0.2
1,663,733	-		GFF1635	0.37	-1.4
1,663,753	+		GFF1635	0.40	-1.8
1,663,753	+		GFF1635	0.40	-1.3
1,663,753	+		GFF1635	0.40	-1.4
1,663,753	+		GFF1635	0.40	-0.4
1,663,753	+		GFF1635	0.40	-1.5
1,663,753	+		GFF1635	0.40	+0.5
1,663,753	+		GFF1635	0.40	+0.0
1,663,753	+		GFF1635	0.40	-2.0
1,663,753	+		GFF1635	0.40	-0.7
1,663,753	+		GFF1635	0.40	-0.8
1,663,756	-		GFF1635	0.41	+0.1
1,663,761	-		GFF1635	0.42	-2.5
1,663,761	-		GFF1635	0.42	-0.2
1,663,802	-		GFF1635	0.49	-2.4
1,663,817	+		GFF1635	0.52	-0.0
1,663,825	-		GFF1635	0.53	+0.2
1,663,844	-		GFF1635	0.57	-1.5
1,663,850	-		GFF1635	0.58	+0.7
1,663,872	+		GFF1635	0.62	+0.5
1,663,883	+		GFF1635	0.64	-1.1
1,663,891	-		GFF1635	0.65	-0.4
1,663,893	-		GFF1635	0.66	-2.5
1,663,901	+		GFF1635	0.67	+0.8
1,663,909	-		GFF1635	0.68	-1.2
1,663,909	-		GFF1635	0.68	+0.2
1,663,909	-		GFF1635	0.68	+0.5
1,663,933	+		GFF1635	0.73	+1.0
1,663,933	+		GFF1635	0.73	-0.8
1,663,934	+		GFF1635	0.73	-2.3
1,663,936	-		GFF1635	0.73	+0.2
1,663,952	+		GFF1635	0.76	-0.1
1,663,952	-		GFF1635	0.76	-0.4
1,663,960	-		GFF1635	0.78	+0.0
1,664,001	-		GFF1635	0.85	-0.7
1,664,035	+				-1.0
1,664,040	+				+0.3
1,664,045	+				-0.1
1,664,055	+				-0.5
1,664,058	-				-0.2
1,664,060	+				+0.3
1,664,062	+				+0.2
1,664,063	-				-1.2
1,664,063	-				-0.7
1,664,063	-				-0.8
1,664,068	-				-0.2
1,664,068	-				+1.0
1,664,070	-				+0.0
1,664,070	-				+0.7
1,664,080	-				+0.8
1,664,080	-				-0.2
1,664,080	-				-1.4
1,664,080	-				-1.9
1,664,095	+				-0.5
1,664,096	+				-1.1
1,664,102	+				+0.6
1,664,104	+				-1.6
1,664,111	-				-0.7
1,664,111	-				+0.1
1,664,114	+				+0.3
1,664,117	-				-0.4
1,664,124	-				+0.5
1,664,124	-				+1.0
1,664,124	-				+0.2
1,664,138	+				-0.7
1,664,138	+				+0.1
1,664,138	+				+0.5
1,664,138	+				-1.1
1,664,138	+				-1.0
1,664,146	-				+0.6
1,664,146	-				-0.0
1,664,146	-				+1.6
1,664,146	-				-0.4
1,664,146	-				-0.2
1,664,153	-				+0.9
1,664,158	-				+0.3
1,664,178	-				+0.6
1,664,188	+				-0.2
1,664,237	+		GFF1636	0.15	-1.5
1,664,253	+		GFF1636	0.18	-1.3
1,664,263	-		GFF1636	0.20	-0.1
1,664,267	+		GFF1636	0.21	+0.6
1,664,269	+		GFF1636	0.21	+0.6
1,664,294	+		GFF1636	0.26	-0.9
1,664,302	-		GFF1636	0.28	-0.8
1,664,302	-		GFF1636	0.28	-2.3
1,664,304	+		GFF1636	0.28	-0.1
1,664,305	+		GFF1636	0.28	+1.3
1,664,305	+		GFF1636	0.28	-2.4
1,664,358	+		GFF1636	0.38	+1.0
1,664,371	+		GFF1636	0.41	+0.6
1,664,371	+		GFF1636	0.41	+0.6
1,664,379	-		GFF1636	0.42	+0.4
1,664,379	-		GFF1636	0.42	-0.6
1,664,389	+		GFF1636	0.44	+0.8
1,664,444	+		GFF1636	0.54	-0.8
1,664,444	+		GFF1636	0.54	-1.2
1,664,453	+		GFF1636	0.56	-1.6
1,664,453	+		GFF1636	0.56	+0.3
1,664,461	+		GFF1636	0.58	-1.2
1,664,461	+		GFF1636	0.58	-1.4
1,664,461	+		GFF1636	0.58	-1.5
1,664,461	+		GFF1636	0.58	-0.7
1,664,467	-		GFF1636	0.59	+0.8
1,664,469	-		GFF1636	0.59	-0.3
1,664,482	+		GFF1636	0.62	-0.5
1,664,482	+		GFF1636	0.62	+1.5
1,664,482	+		GFF1636	0.62	-2.1
1,664,482	+		GFF1636	0.62	+0.0
1,664,490	-		GFF1636	0.63	+0.2
1,664,493	+		GFF1636	0.64	-0.4
1,664,493	+		GFF1636	0.64	-0.4
1,664,501	-		GFF1636	0.65	-0.7
1,664,516	+		GFF1636	0.68	-0.3
1,664,516	+		GFF1636	0.68	+0.2
1,664,517	+		GFF1636	0.68	-0.4
1,664,518	+		GFF1636	0.68	-2.4
1,664,524	-		GFF1636	0.69	-1.1
1,664,526	+		GFF1636	0.70	-1.1
1,664,526	+		GFF1636	0.70	+0.7
1,664,526	+		GFF1636	0.70	-1.2
1,664,526	+		GFF1636	0.70	-0.2
1,664,526	+		GFF1636	0.70	+1.0
1,664,526	+		GFF1636	0.70	+0.2
1,664,526	+		GFF1636	0.70	+0.0
1,664,526	+		GFF1636	0.70	+0.3
1,664,526	+		GFF1636	0.70	+1.2
1,664,526	+		GFF1636	0.70	-2.0
1,664,526	+		GFF1636	0.70	-0.3
1,664,534	-		GFF1636	0.71	+0.3
1,664,534	-		GFF1636	0.71	+1.0
1,664,534	-		GFF1636	0.71	+1.1
1,664,534	-		GFF1636	0.71	+0.5
1,664,534	-		GFF1636	0.71	-2.0
1,664,540	+		GFF1636	0.73	+1.1
1,664,540	+		GFF1636	0.73	+0.2
1,664,548	-		GFF1636	0.74	-2.0
1,664,550	+		GFF1636	0.74	-1.3
1,664,553	-		GFF1636	0.75	-1.3
1,664,558	-		GFF1636	0.76	+0.8
1,664,558	-		GFF1636	0.76	-0.7
1,664,558	-		GFF1636	0.76	-0.9
1,664,559	-		GFF1636	0.76	-1.0
1,664,559	-		GFF1636	0.76	+0.5
1,664,560	+		GFF1636	0.76	+0.2
1,664,568	-		GFF1636	0.78	-0.4
1,664,617	-		GFF1636	0.87	+0.5
1,664,720	+				+0.2
1,664,721	-				-1.4
1,664,724	+				-0.5
1,664,736	-				+0.2
1,664,736	-				+0.4
1,664,760	+		GFF1637	0.13	+0.0
1,664,760	+		GFF1637	0.13	+1.0
1,664,760	+		GFF1637	0.13	-0.8
1,664,760	+		GFF1637	0.13	+1.6
1,664,760	+		GFF1637	0.13	-0.5
1,664,760	+		GFF1637	0.13	-0.1
1,664,760	+		GFF1637	0.13	-0.4
1,664,767	+		GFF1637	0.15	-1.3
1,664,768	-		GFF1637	0.15	+0.4
1,664,768	-		GFF1637	0.15	+0.2
1,664,775	-		GFF1637	0.16	+0.6
1,664,775	-		GFF1637	0.16	-2.1
1,664,810	+		GFF1637	0.24	-0.3
1,664,810	+		GFF1637	0.24	-0.7
1,664,810	+		GFF1637	0.24	+1.1
1,664,810	+		GFF1637	0.24	-1.4
1,664,810	+		GFF1637	0.24	-2.8
1,664,810	+		GFF1637	0.24	-3.2
1,664,810	+		GFF1637	0.24	+0.8
1,664,810	+		GFF1637	0.24	-1.2
1,664,810	+		GFF1637	0.24	-0.4
1,664,810	+		GFF1637	0.24	+0.1
1,664,810	+		GFF1637	0.24	-0.4
1,664,810	+		GFF1637	0.24	+0.5
1,664,810	+		GFF1637	0.24	-1.0
1,664,810	+		GFF1637	0.24	+0.4
1,664,818	-		GFF1637	0.26	-1.2
1,664,818	-		GFF1637	0.26	+1.4
1,664,818	-		GFF1637	0.26	+0.2
1,664,818	-		GFF1637	0.26	+0.3
1,664,818	-		GFF1637	0.26	-1.4
1,664,818	-		GFF1637	0.26	-1.2
1,664,818	-		GFF1637	0.26	-2.1
1,664,818	-		GFF1637	0.26	+0.1
1,664,818	-		GFF1637	0.26	-0.1
1,664,818	-		GFF1637	0.26	+0.1
1,664,818	-		GFF1637	0.26	-0.6
1,664,818	-		GFF1637	0.26	+0.1
1,664,818	-		GFF1637	0.26	-0.0
1,664,844	+		GFF1637	0.32	-0.1
1,664,891	+		GFF1637	0.42	-1.4
1,664,891	+		GFF1637	0.42	-1.1
1,664,891	+		GFF1637	0.42	+0.2
1,664,891	+		GFF1637	0.42	-0.0
1,664,891	+		GFF1637	0.42	+0.5
1,664,891	+		GFF1637	0.42	+1.7
1,664,891	+		GFF1637	0.42	+0.5
1,664,891	+		GFF1637	0.42	+0.5
1,664,891	+		GFF1637	0.42	-0.4
1,664,891	+		GFF1637	0.42	-0.5
1,664,891	+		GFF1637	0.42	-2.4
1,664,891	+		GFF1637	0.42	+0.7
1,664,891	+		GFF1637	0.42	-0.2
1,664,891	+		GFF1637	0.42	+0.1
1,664,891	+		GFF1637	0.42	+0.1
1,664,891	+		GFF1637	0.42	-0.7
1,664,891	+		GFF1637	0.42	+0.3
1,664,891	+		GFF1637	0.42	+0.7
1,664,891	+		GFF1637	0.42	-0.5
1,664,899	-		GFF1637	0.44	+0.5
1,664,899	-		GFF1637	0.44	-1.3
1,664,899	-		GFF1637	0.44	+0.6
1,664,899	-		GFF1637	0.44	+1.1
1,664,899	-		GFF1637	0.44	+0.2
1,664,899	-		GFF1637	0.44	-0.7
1,664,899	-		GFF1637	0.44	-0.8
1,664,899	-		GFF1637	0.44	-0.1
1,664,899	-		GFF1637	0.44	-0.6
1,664,899	-		GFF1637	0.44	+0.8
1,664,913	+		GFF1637	0.47	-0.7
1,664,918	+		GFF1637	0.48	-0.3
1,664,926	+		GFF1637	0.50	-0.5
1,664,941	-		GFF1637	0.53	-0.9
1,664,968	+		GFF1637	0.60	+0.2
1,664,986	+		GFF1637	0.64	-1.0
1,664,991	+		GFF1637	0.65	-1.0
1,664,991	+		GFF1637	0.65	-0.1
1,664,991	+		GFF1637	0.65	-0.2
1,664,991	+		GFF1637	0.65	+0.4
1,664,996	+		GFF1637	0.66	-0.3
1,664,999	-		GFF1637	0.66	-0.7
1,664,999	-		GFF1637	0.66	-0.3
1,664,999	-		GFF1637	0.66	-0.2
1,664,999	-		GFF1637	0.66	-0.2
1,665,004	-		GFF1637	0.68	-1.6
1,665,004	-		GFF1637	0.68	-0.2
1,665,010	+		GFF1637	0.69	-0.0
1,665,023	-		GFF1637	0.72	-0.9
1,665,036	+		GFF1637	0.75	-1.8
1,665,044	-		GFF1637	0.77	-2.1
1,665,044	-		GFF1637	0.77	+0.9
1,665,046	+		GFF1637	0.77	+2.2
1,665,064	-		GFF1637	0.81	-0.0
1,665,064	-		GFF1637	0.81	-0.2
1,665,091	+		GFF1637	0.87	-1.0
1,665,094	-		GFF1637	0.88	-1.0
1,665,099	-		GFF1637	0.89	-1.9
1,665,124	-				+1.0
1,665,139	-				-0.5
1,665,154	-				+0.1
1,665,236	+				-0.9
1,665,241	+				-0.7
1,665,241	+				-0.2
1,665,241	+				-0.4
1,665,241	+				-2.5
1,665,241	+				+0.2
1,665,241	+				+0.0
1,665,241	+				+0.1
1,665,241	+				-0.5
1,665,241	+				-0.4
1,665,241	+				-1.0
1,665,241	+				+1.5
1,665,241	+				+0.5
1,665,241	+				-0.2
1,665,241	+				-0.4
1,665,241	+				+0.1
1,665,241	+				+0.6
1,665,241	+				-0.4
1,665,241	+				-2.0
1,665,241	+				-1.8
1,665,241	+				+0.6
1,665,241	+				+1.1
1,665,241	+				+0.5
1,665,241	+				+0.6
1,665,241	+				+0.7
1,665,241	+				-0.4
1,665,241	+				+0.8
1,665,241	+				-0.1
1,665,241	+				-0.1
1,665,241	+				+0.3
1,665,241	+				-0.1
1,665,241	+				-1.0
1,665,241	+				-1.0
1,665,241	+				-0.4
1,665,241	+				-0.7
1,665,241	+				-0.3
1,665,241	+				+0.2
1,665,241	+				-1.4
1,665,241	+				+0.2
1,665,241	+				-1.0
1,665,241	+				-0.1
1,665,241	+				-0.5
1,665,241	+				+0.9
1,665,241	+				-2.2
1,665,241	+				-2.2
1,665,249	-				-1.6
1,665,249	-				-1.1
1,665,249	-				-0.0
1,665,249	-				-0.5
1,665,249	-				-0.2
1,665,249	-				+0.1
1,665,249	-				-0.2
1,665,249	-				+0.1
1,665,249	-				-0.1
1,665,249	-				-1.3
1,665,249	-				+0.4
1,665,249	-				-0.5
1,665,249	-				-0.2
1,665,249	-				-0.2
1,665,249	-				+0.2
1,665,249	-				-1.4
1,665,249	-				-0.2
1,665,249	-				-2.6
1,665,249	-				+0.8
1,665,249	-				+0.0
1,665,249	-				-2.2
1,665,249	-				-0.3
1,665,249	-				-0.2
1,665,249	-				-0.2
1,665,249	-				+0.7
1,665,249	-				+1.7
1,665,249	-				-0.9
1,665,249	-				+0.8
1,665,249	-				+0.1
1,665,249	-				+0.5
1,665,249	-				+0.3
1,665,249	-				-0.4
1,665,267	-				-1.9
1,665,286	-				+0.5
1,665,286	-				-0.2
1,665,286	-				-1.7
1,665,296	-				+0.5
1,665,352	+		GFF1638	0.19	-0.9
1,665,353	+		GFF1638	0.19	+0.6
1,665,373	+		GFF1638	0.23	+0.0
1,665,373	+		GFF1638	0.23	+0.9
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1,665,395	+		GFF1638	0.28	-2.8
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1,665,395	+		GFF1638	0.28	-2.1
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1,665,416	+		GFF1638	0.32	-2.1
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1,665,611	+		GFF1638	0.71	-1.8
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1,665,619	-		GFF1638	0.72	-2.4
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1,665,670	-		GFF1638	0.83	-1.3
1,665,672	+		GFF1638	0.83	-1.0
1,665,680	-		GFF1638	0.85	+0.3
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