Strain Fitness in Sphingobium sp. HT1-2 around GFF153

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
146,093	-		GFF152	0.20	+1.2
146,093	-		GFF152	0.20	-0.6
146,100	-		GFF152	0.21	+1.1
146,125	-		GFF152	0.23	-0.5
146,155	-		GFF152	0.25	+0.6
146,159	+		GFF152	0.26	-0.4
146,159	+		GFF152	0.26	+0.3
146,164	+		GFF152	0.26	-0.6
146,167	-		GFF152	0.26	-2.7
146,199	-		GFF152	0.29	-0.3
146,231	+		GFF152	0.31	-0.4
146,231	+		GFF152	0.31	+0.2
146,231	+		GFF152	0.31	+1.3
146,241	+		GFF152	0.32	-1.9
146,260	+		GFF152	0.34	-2.0
146,262	+		GFF152	0.34	-0.5
146,262	+		GFF152	0.34	+0.4
146,264	-		GFF152	0.34	-0.6
146,268	-		GFF152	0.34	+0.6
146,272	+		GFF152	0.35	-0.7
146,272	+		GFF152	0.35	-2.5
146,280	+		GFF152	0.35	-2.0
146,326	-		GFF152	0.39	+1.3
146,338	+		GFF152	0.40	+0.4
146,345	-		GFF152	0.40	-0.7
146,345	-		GFF152	0.40	-0.3
146,345	-		GFF152	0.40	+1.1
146,346	-		GFF152	0.41	-0.5
146,348	-		GFF152	0.41	-0.9
146,358	-		GFF152	0.41	-0.2
146,373	+		GFF152	0.43	-1.5
146,381	-		GFF152	0.43	+0.4
146,388	+		GFF152	0.44	-1.2
146,408	-		GFF152	0.45	-0.8
146,408	-		GFF152	0.45	+0.5
146,411	-		GFF152	0.46	-0.4
146,411	-		GFF152	0.46	+0.2
146,438	+		GFF152	0.48	-0.4
146,443	+		GFF152	0.48	-1.0
146,445	-		GFF152	0.48	+0.7
146,453	+		GFF152	0.49	+0.1
146,453	+		GFF152	0.49	-0.1
146,453	+		GFF152	0.49	+0.7
146,461	-		GFF152	0.50	+0.4
146,461	-		GFF152	0.50	-0.0
146,461	-		GFF152	0.50	-0.9
146,468	+		GFF152	0.50	-1.3
146,494	+		GFF152	0.52	+1.4
146,494	+		GFF152	0.52	-1.3
146,494	+		GFF152	0.52	+0.9
146,494	+		GFF152	0.52	-1.1
146,494	+		GFF152	0.52	-0.9
146,497	-		GFF152	0.53	-0.8
146,502	-		GFF152	0.53	-0.5
146,502	-		GFF152	0.53	-0.0
146,502	-		GFF152	0.53	-1.0
146,502	-		GFF152	0.53	+0.4
146,502	-		GFF152	0.53	-0.3
146,502	-		GFF152	0.53	+1.4
146,531	+		GFF152	0.55	-1.2
146,533	+		GFF152	0.55	-0.7
146,539	-		GFF152	0.56	-0.1
146,539	-		GFF152	0.56	+0.4
146,539	-		GFF152	0.56	-0.4
146,539	-		GFF152	0.56	-0.6
146,539	-		GFF152	0.56	+0.1
146,539	-		GFF152	0.56	-1.0
146,539	-		GFF152	0.56	-0.3
146,539	-		GFF152	0.56	-0.3
146,546	+		GFF152	0.56	-1.4
146,594	-		GFF152	0.60	-1.3
146,596	+		GFF152	0.60	+0.7
146,604	-		GFF152	0.61	+1.1
146,609	-		GFF152	0.61	+0.4
146,631	+		GFF152	0.63	-0.7
146,631	+		GFF152	0.63	-1.4
146,631	+		GFF152	0.63	-0.3
146,631	+		GFF152	0.63	+0.2
146,631	+		GFF152	0.63	+0.3
146,631	+		GFF152	0.63	+1.3
146,631	+		GFF152	0.63	-1.1
146,631	+		GFF152	0.63	-0.4
146,639	-		GFF152	0.64	-1.5
146,639	-		GFF152	0.64	+0.9
146,639	-		GFF152	0.64	-1.1
146,639	-		GFF152	0.64	-1.3
146,639	-		GFF152	0.64	+1.5
146,639	-		GFF152	0.64	-0.3
146,639	-		GFF152	0.64	-1.0
146,639	-		GFF152	0.64	+0.6
146,639	-		GFF152	0.64	+0.9
146,639	-		GFF152	0.64	+2.1
146,648	+		GFF152	0.65	-0.5
146,658	+		GFF152	0.65	-0.3
146,658	+		GFF152	0.65	-1.1
146,671	+		GFF152	0.66	-1.3
146,676	+		GFF152	0.67	-0.4
146,676	+		GFF152	0.67	+0.2
146,677	+		GFF152	0.67	-0.3
146,679	-		GFF152	0.67	+0.2
146,684	-		GFF152	0.67	-1.5
146,684	-		GFF152	0.67	-1.3
146,706	+		GFF152	0.69	-1.9
146,714	-		GFF152	0.70	-2.5
146,714	-		GFF152	0.70	-2.3
146,730	-		GFF152	0.71	-0.5
146,752	+		GFF152	0.73	+1.1
146,753	-		GFF152	0.73	-2.4
146,753	-		GFF152	0.73	+0.1
146,753	-		GFF152	0.73	-0.5
146,786	+		GFF152	0.76	+0.8
146,786	+		GFF152	0.76	+0.6
146,789	-		GFF152	0.76	-0.7
146,793	-		GFF152	0.76	+1.2
146,794	-		GFF152	0.76	+0.5
146,794	-		GFF152	0.76	-1.7
146,799	+		GFF152	0.77	+1.1
146,807	-		GFF152	0.77	+0.8
146,817	-		GFF152	0.78	-1.7
146,826	-		GFF152	0.79	-3.0
146,833	-		GFF152	0.79	-0.7
146,833	-		GFF152	0.79	-1.3
146,833	-		GFF152	0.79	-1.0
146,838	+		GFF152	0.80	-0.6
146,841	-		GFF152	0.80	-1.4
146,860	+		GFF152	0.81	+0.4
146,862	+		GFF152	0.82	+1.0
146,864	+		GFF152	0.82	+0.3
146,870	-		GFF152	0.82	-2.0
146,935	+		GFF152	0.87	-0.0
146,951	+		GFF152	0.89	-0.7
146,976	+				+0.9
147,016	+				-0.3
147,023	+				-0.1
147,024	-				+0.1
147,024	-				-0.3
147,029	-				+0.2
147,029	-				+0.2
147,070	+				-0.8
147,070	+				+0.5
147,070	+				-1.6
147,070	+				-0.1
147,070	+				+1.0
147,070	+				+0.9
147,070	+				-0.7
147,078	-				-0.2
147,078	-				-0.1
147,078	-				-0.7
147,078	-				+0.4
147,078	-				-1.9
147,078	-				+0.1
147,078	-				-1.2
147,078	-				-0.6
147,078	-				-0.7
147,078	-				-0.5
147,085	+				+0.4
147,087	+				+0.1
147,091	+				-0.4
147,144	+				-0.5
147,152	-				-0.5
147,165	+				-0.3
147,165	+				-1.4
147,165	+				-0.8
147,165	+				-0.7
147,165	+				-2.2
147,173	-				-1.5
147,173	-				+0.5
147,173	-				-1.0
147,180	+				-0.4
147,185	+				-1.3
147,185	+				-2.3
147,185	+				+1.8
147,188	-				-0.1
147,210	+				-0.9
147,260	+		GFF153	0.12	-1.9
147,260	+		GFF153	0.12	+0.2
147,265	+		GFF153	0.12	-0.3
147,270	+		GFF153	0.13	-0.6
147,270	+		GFF153	0.13	+0.2
147,270	+		GFF153	0.13	-1.3
147,270	+		GFF153	0.13	+1.2
147,278	-		GFF153	0.13	-0.3
147,278	-		GFF153	0.13	-0.2
147,284	+		GFF153	0.14	+0.3
147,292	-		GFF153	0.14	-0.1
147,292	-		GFF153	0.14	-0.6
147,292	-		GFF153	0.14	+0.3
147,297	+		GFF153	0.14	-0.9
147,314	+		GFF153	0.16	-0.1
147,322	-		GFF153	0.16	-0.3
147,355	+		GFF153	0.19	-0.0
147,362	+		GFF153	0.19	+0.1
147,362	+		GFF153	0.19	-1.1
147,362	+		GFF153	0.19	-0.3
147,362	+		GFF153	0.19	+0.6
147,362	+		GFF153	0.19	-2.0
147,362	+		GFF153	0.19	-0.5
147,362	+		GFF153	0.19	-0.2
147,363	-		GFF153	0.19	-0.8
147,370	-		GFF153	0.20	-0.8
147,370	-		GFF153	0.20	-0.8
147,370	-		GFF153	0.20	+0.5
147,372	+		GFF153	0.20	-0.4
147,380	-		GFF153	0.20	+0.3
147,380	-		GFF153	0.20	+1.4
147,392	-		GFF153	0.21	+0.2
147,457	+		GFF153	0.26	-0.5
147,464	+		GFF153	0.26	+1.0
147,465	-		GFF153	0.26	-0.8
147,478	+		GFF153	0.27	-2.1
147,478	+		GFF153	0.27	+0.0
147,478	+		GFF153	0.27	-1.3
147,479	+		GFF153	0.27	+0.1
147,486	-		GFF153	0.28	+0.5
147,486	-		GFF153	0.28	-0.8
147,486	-		GFF153	0.28	-0.2
147,486	-		GFF153	0.28	+0.0
147,510	+		GFF153	0.29	-0.4
147,518	+		GFF153	0.30	-0.4
147,528	+		GFF153	0.30	-0.1
147,530	+		GFF153	0.31	-1.6
147,531	-		GFF153	0.31	-0.9
147,538	-		GFF153	0.31	+0.5
147,554	+		GFF153	0.32	-0.0
147,554	+		GFF153	0.32	-1.6
147,595	-		GFF153	0.35	-1.6
147,598	+		GFF153	0.35	+1.0
147,605	+		GFF153	0.36	+0.4
147,613	+		GFF153	0.36	-1.4
147,613	+		GFF153	0.36	-0.9
147,613	+		GFF153	0.36	+0.1
147,621	-		GFF153	0.37	-0.6
147,621	-		GFF153	0.37	-1.5
147,621	-		GFF153	0.37	-0.6
147,654	-		GFF153	0.39	+0.8
147,656	+		GFF153	0.39	-2.1
147,668	+		GFF153	0.40	+0.2
147,679	+		GFF153	0.41	+1.7
147,679	+		GFF153	0.41	+0.2
147,679	+		GFF153	0.41	-0.8
147,707	+		GFF153	0.43	-0.4
147,719	-		GFF153	0.44	-0.6
147,728	+		GFF153	0.44	+0.6
147,729	-		GFF153	0.44	+0.3
147,733	+		GFF153	0.45	-2.3
147,775	+		GFF153	0.48	-2.2
147,775	+		GFF153	0.48	-1.3
147,775	+		GFF153	0.48	+1.1
147,775	+		GFF153	0.48	+0.4
147,775	+		GFF153	0.48	-1.0
147,780	+		GFF153	0.48	+1.0
147,783	-		GFF153	0.48	-1.4
147,788	-		GFF153	0.49	+0.2
147,788	-		GFF153	0.49	+0.4
147,791	+		GFF153	0.49	-0.5
147,793	-		GFF153	0.49	-2.1
147,824	+		GFF153	0.51	-2.1
147,824	+		GFF153	0.51	-0.5
147,824	+		GFF153	0.51	-1.4
147,824	+		GFF153	0.51	+0.2
147,824	+		GFF153	0.51	+0.6
147,824	+		GFF153	0.51	-1.3
147,832	-		GFF153	0.52	-2.0
147,832	-		GFF153	0.52	-0.3
147,832	-		GFF153	0.52	-1.6
147,832	-		GFF153	0.52	-0.6
147,832	-		GFF153	0.52	-1.5
147,889	-		GFF153	0.56	-1.1
147,908	+		GFF153	0.57	+0.3
147,916	-		GFF153	0.57	-0.0
147,935	+		GFF153	0.59	+0.4
147,949	+		GFF153	0.60	-0.3
147,949	+		GFF153	0.60	-0.2
147,949	+		GFF153	0.60	+0.8
147,965	+		GFF153	0.61	-2.7
147,973	-		GFF153	0.61	-0.9
148,024	+		GFF153	0.65	-1.0
148,024	+		GFF153	0.65	-1.2
148,028	+		GFF153	0.65	+0.9
148,028	+		GFF153	0.65	-1.5
148,028	+		GFF153	0.65	-0.5
148,028	+		GFF153	0.65	+0.0
148,032	+		GFF153	0.65	+0.1
148,034	+		GFF153	0.66	+0.2
148,036	-		GFF153	0.66	-0.1
148,036	-		GFF153	0.66	+0.1
148,036	-		GFF153	0.66	-0.8
148,036	-		GFF153	0.66	-1.7
148,036	-		GFF153	0.66	-0.5
148,041	-		GFF153	0.66	-0.7
148,042	-		GFF153	0.66	-1.0
148,059	-		GFF153	0.67	-0.8
148,083	-		GFF153	0.69	+0.0
148,113	-		GFF153	0.71	-0.3
148,126	-		GFF153	0.72	-0.5
148,157	-		GFF153	0.74	-0.4
148,162	+		GFF153	0.74	-0.6
148,165	-		GFF153	0.75	+0.1
148,170	-		GFF153	0.75	-0.6
148,170	-		GFF153	0.75	-0.6
148,175	+		GFF153	0.75	-0.6
148,177	+		GFF153	0.75	-0.3
148,204	+		GFF153	0.77	+0.0
148,204	+		GFF153	0.77	-1.9
148,204	+		GFF153	0.77	+0.3
148,204	+		GFF153	0.77	-0.4
148,204	+		GFF153	0.77	-1.7
148,204	+		GFF153	0.77	+0.3
148,204	+		GFF153	0.77	-0.8
148,204	+		GFF153	0.77	+0.8
148,212	-		GFF153	0.78	+0.7
148,212	-		GFF153	0.78	-0.8
148,212	-		GFF153	0.78	+1.1
148,212	-		GFF153	0.78	+1.6
148,212	-		GFF153	0.78	-1.3
148,212	-		GFF153	0.78	-1.7
148,212	-		GFF153	0.78	+1.2
148,212	-		GFF153	0.78	-0.8
148,217	-		GFF153	0.78	+0.1
148,218	+		GFF153	0.78	-1.4
148,248	+		GFF153	0.80	+0.6
148,326	-		GFF153	0.86	-0.6
148,367	+		GFF153	0.89	-2.3
148,367	+		GFF153	0.89	-0.2
148,369	-		GFF153	0.89	-0.3
148,369	-		GFF153	0.89	-1.8
148,384	+		GFF153	0.90	-1.3
148,384	+		GFF153	0.90	-0.1
148,384	+		GFF153	0.90	-1.5
148,392	-				-1.0
148,394	+				+0.6
148,399	+				-0.5
148,407	-				-0.0
148,412	+				+0.3
148,412	+				-0.6
148,415	+				-0.3
148,420	-				-0.5
148,420	-				+0.7
148,438	+				-0.7
148,448	-				-0.1
148,459	+				-1.1
148,460	-				+0.6
148,483	-				-0.3
148,515	+				-0.6
148,515	+				-1.5
148,515	+				-0.8
148,523	-				+0.4
148,523	-				-0.0
148,523	-				-1.3
148,523	-				-0.0
148,527	-				-0.8
148,565	+				-1.2
148,574	+				-2.7
148,574	+				+0.1
148,574	+				-2.2
148,574	+				-1.5
148,582	-				+0.2
148,582	-				+0.2
148,582	-				+0.7
148,582	-				-1.6
148,582	-				-1.8
148,582	-				+1.0
148,582	-				+0.9
148,582	-				-0.6
148,582	-				+0.1
148,583	+				-0.4
148,584	+				-2.5
148,593	-				-0.5
148,593	-				-0.0
148,593	-				+0.7
148,598	-				+0.0
148,660	+		GFF154	0.18	-0.0
148,670	+		GFF154	0.19	+0.1
148,670	+		GFF154	0.19	-0.2
148,670	+		GFF154	0.19	-1.1
148,670	+		GFF154	0.19	-0.2
148,670	+		GFF154	0.19	+0.4
148,670	+		GFF154	0.19	+0.4
148,670	+		GFF154	0.19	-1.7
148,670	+		GFF154	0.19	-2.1
148,670	+		GFF154	0.19	-0.3
148,670	+		GFF154	0.19	-1.0
148,670	+		GFF154	0.19	+1.0
148,670	+		GFF154	0.19	-0.9
148,678	-		GFF154	0.20	+0.0
148,678	-		GFF154	0.20	+0.3
148,678	-		GFF154	0.20	+0.1
148,678	-		GFF154	0.20	-1.5
148,678	-		GFF154	0.20	-0.3
148,678	-		GFF154	0.20	-0.0
148,678	-		GFF154	0.20	-1.5
148,678	-		GFF154	0.20	-3.2
148,678	-		GFF154	0.20	+0.1
148,678	-		GFF154	0.20	-0.0
148,678	-		GFF154	0.20	-0.5
148,686	-		GFF154	0.22	-0.7
148,692	+		GFF154	0.22	+1.2
148,693	+		GFF154	0.22	+0.5
148,693	+		GFF154	0.22	+0.0
148,718	+		GFF154	0.26	-1.8
148,722	-		GFF154	0.26	-0.8
148,722	-		GFF154	0.26	+0.5
148,751	+		GFF154	0.30	+0.2
148,751	+		GFF154	0.30	-1.3
148,751	+		GFF154	0.30	-0.1
148,751	+		GFF154	0.30	-2.3
148,759	-		GFF154	0.31	-1.1
148,759	-		GFF154	0.31	-0.2
148,759	-		GFF154	0.31	-1.5
148,770	-		GFF154	0.33	-1.5
148,770	-		GFF154	0.33	-0.6
148,785	+		GFF154	0.35	-0.7
148,790	+		GFF154	0.36	-1.8
148,795	+		GFF154	0.36	-0.6
148,795	-		GFF154	0.36	-1.6
148,797	+		GFF154	0.37	-0.6
148,803	-		GFF154	0.37	-0.8
148,803	-		GFF154	0.37	-0.5
148,803	-		GFF154	0.37	-1.6
148,803	-		GFF154	0.37	-0.9
148,805	+		GFF154	0.38	-0.3
148,813	-		GFF154	0.39	-0.8
148,813	-		GFF154	0.39	-0.5
148,824	+		GFF154	0.40	+0.4
148,835	-		GFF154	0.42	-1.3
148,859	+		GFF154	0.45	+0.8
148,863	+		GFF154	0.46	-2.5
148,878	+		GFF154	0.48	-1.0
148,878	+		GFF154	0.48	-0.9
148,878	+		GFF154	0.48	-0.7
148,886	-		GFF154	0.49	-1.0
148,911	-		GFF154	0.52	+0.1
148,927	-		GFF154	0.54	-1.3
148,938	-		GFF154	0.56	-1.5
149,012	-		GFF154	0.66	+1.1
149,037	-		GFF154	0.69	-0.0
149,037	-		GFF154	0.69	-1.6
149,037	-		GFF154	0.69	+0.0
149,037	-		GFF154	0.69	+0.4
149,049	+		GFF154	0.71	+0.4
149,056	+		GFF154	0.72	-0.3
149,059	+		GFF154	0.72	+0.6
149,061	-		GFF154	0.72	+0.2
149,079	+		GFF154	0.75	-1.0
149,094	+		GFF154	0.77	-0.7
149,102	-		GFF154	0.78	-1.2
149,113	+		GFF154	0.79	-1.2
149,113	+		GFF154	0.79	-0.8
149,121	-		GFF154	0.80	+0.1
149,121	-		GFF154	0.80	-2.1
149,145	-		GFF154	0.84	-1.3
149,177	+		GFF154	0.88	-1.7
149,177	+		GFF154	0.88	-1.8
149,177	+		GFF154	0.88	+1.2
149,177	+		GFF154	0.88	-1.5
149,177	+		GFF154	0.88	+0.3
149,177	+		GFF154	0.88	+0.6
149,177	+		GFF154	0.88	-0.7
149,182	+		GFF154	0.89	-1.2
149,185	-		GFF154	0.89	-2.8
149,185	-		GFF154	0.89	-0.9
149,185	-		GFF154	0.89	-1.9
149,185	-		GFF154	0.89	-1.3
149,185	-		GFF154	0.89	-1.7
149,185	-		GFF154	0.89	-0.4
149,185	-		GFF154	0.89	-0.1
149,185	-		GFF154	0.89	+0.3
149,185	-		GFF154	0.89	-0.3
149,185	-		GFF154	0.89	-0.8
149,185	-		GFF154	0.89	-2.0
149,192	+				+1.1
149,192	+				-0.0
149,192	+				-0.7
149,206	+				-2.7
149,206	+				-0.3
149,214	-				-0.8
149,214	-				-0.6
149,214	-				+1.7
149,216	+				+0.4
149,233	+				-0.3
149,241	-				-0.0
149,241	-				+0.1
149,241	-				-0.7
149,241	-				+0.6
149,243	+				-0.7
149,251	-				-0.6
149,254	+				-1.6
149,277	+				-0.3
149,360	+				-1.6
149,360	+				-1.3
149,360	+				-1.9
149,360	+				-2.1
149,365	+				-0.5
149,365	+				+0.8
149,365	+				-2.0
149,365	+				+0.5
149,365	+				+0.3
149,367	-				+0.5
149,369	-				+1.7
149,373	-				-0.7
149,373	-				+1.4
149,373	-				-0.5
149,373	-				+0.9
149,375	-				-0.5
149,409	+				+0.2
149,409	+				-0.1
149,441	+				+0.7
149,451	+				-0.5
149,451	+				+0.7
149,456	+				+0.1
149,457	+				-0.4
149,459	-				-0.1
149,503	+				-0.9
149,508	+				-0.5
149,508	+				-1.4
149,508	+				+0.3
149,511	-				-0.1
149,516	-				-0.5
149,516	-				+0.2
149,516	-				-0.7
149,516	-				-1.6
149,516	-				+1.7
149,516	-				+0.5
149,521	-				-0.8