Strain Fitness in Sphingobium sp. HT1-2 around GFF1394

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,419,536	+		GFF1393	0.52	+0.0
1,419,544	-		GFF1393	0.52	-0.9
1,419,565	-		GFF1393	0.53	-1.9
1,419,565	-		GFF1393	0.53	-0.6
1,419,601	+		GFF1393	0.55	-0.8
1,419,601	+		GFF1393	0.55	+0.5
1,419,601	+		GFF1393	0.55	+1.2
1,419,601	+		GFF1393	0.55	-0.4
1,419,601	+		GFF1393	0.55	+0.5
1,419,601	+		GFF1393	0.55	+1.1
1,419,606	+		GFF1393	0.55	+0.5
1,419,608	+		GFF1393	0.55	+0.5
1,419,608	+		GFF1393	0.55	-0.3
1,419,609	-		GFF1393	0.56	-0.4
1,419,615	-		GFF1393	0.56	-0.6
1,419,623	+		GFF1393	0.56	+0.1
1,419,633	-		GFF1393	0.57	-2.3
1,419,645	+		GFF1393	0.57	-0.1
1,419,645	+		GFF1393	0.57	-0.0
1,419,653	-		GFF1393	0.58	+1.6
1,419,673	-		GFF1393	0.59	-0.0
1,419,677	-		GFF1393	0.59	+0.9
1,419,691	+		GFF1393	0.59	-0.1
1,419,694	-		GFF1393	0.60	-0.9
1,419,699	-		GFF1393	0.60	-1.6
1,419,705	-		GFF1393	0.60	+1.3
1,419,705	-		GFF1393	0.60	+0.2
1,419,705	-		GFF1393	0.60	+0.4
1,419,737	-		GFF1393	0.62	+0.3
1,419,759	-		GFF1393	0.63	-0.4
1,419,771	-		GFF1393	0.63	-1.9
1,419,825	+		GFF1393	0.66	-0.4
1,419,826	-		GFF1393	0.66	-0.7
1,419,834	+		GFF1393	0.66	+1.1
1,419,836	+		GFF1393	0.66	+0.2
1,419,844	+		GFF1393	0.67	-0.6
1,419,844	+		GFF1393	0.67	-2.0
1,419,844	+		GFF1393	0.67	+1.2
1,419,852	-		GFF1393	0.67	+0.4
1,419,852	-		GFF1393	0.67	-2.4
1,419,852	-		GFF1393	0.67	+0.1
1,419,858	-		GFF1393	0.67	-0.9
1,419,927	-		GFF1393	0.71	-0.4
1,419,933	-		GFF1393	0.71	-2.0
1,419,964	-		GFF1393	0.73	-1.4
1,420,007	-		GFF1393	0.75	-0.3
1,420,008	+		GFF1393	0.75	-0.6
1,420,012	-		GFF1393	0.75	+0.5
1,420,023	+		GFF1393	0.75	+0.2
1,420,070	+		GFF1393	0.78	-2.1
1,420,083	-		GFF1393	0.78	-1.8
1,420,090	-		GFF1393	0.79	+0.5
1,420,116	+		GFF1393	0.80	-1.2
1,420,118	+		GFF1393	0.80	+0.4
1,420,130	+		GFF1393	0.80	+0.7
1,420,130	+		GFF1393	0.80	-2.5
1,420,130	+		GFF1393	0.80	-1.1
1,420,130	+		GFF1393	0.80	-0.4
1,420,133	-		GFF1393	0.81	-2.1
1,420,138	-		GFF1393	0.81	-0.2
1,420,138	-		GFF1393	0.81	-1.5
1,420,138	-		GFF1393	0.81	+0.0
1,420,138	-		GFF1393	0.81	+0.1
1,420,138	-		GFF1393	0.81	+0.6
1,420,138	-		GFF1393	0.81	+0.1
1,420,165	+		GFF1393	0.82	-2.3
1,420,165	+		GFF1393	0.82	-1.3
1,420,165	+		GFF1393	0.82	+0.1
1,420,165	+		GFF1393	0.82	+0.1
1,420,165	+		GFF1393	0.82	-1.5
1,420,173	-		GFF1393	0.83	-2.2
1,420,173	-		GFF1393	0.83	+1.2
1,420,173	-		GFF1393	0.83	+0.2
1,420,225	+		GFF1393	0.85	+1.6
1,420,225	+		GFF1393	0.85	+0.2
1,420,251	+		GFF1393	0.86	-0.0
1,420,251	+		GFF1393	0.86	+0.3
1,420,251	+		GFF1393	0.86	+0.4
1,420,251	+		GFF1393	0.86	-0.8
1,420,259	-		GFF1393	0.87	+0.6
1,420,259	-		GFF1393	0.87	-1.4
1,420,261	+		GFF1393	0.87	-1.6
1,420,261	+		GFF1393	0.87	+0.4
1,420,261	+		GFF1393	0.87	+1.1
1,420,261	+		GFF1393	0.87	+0.4
1,420,261	+		GFF1393	0.87	-1.5
1,420,269	-		GFF1393	0.87	-0.5
1,420,290	-		GFF1393	0.88	-0.1
1,420,292	+		GFF1393	0.88	-0.3
1,420,300	-		GFF1393	0.89	-0.7
1,420,310	-		GFF1393	0.89	-0.2
1,420,313	+		GFF1393	0.89	-1.4
1,420,334	+				-2.1
1,420,336	+				-0.4
1,420,358	+				+0.5
1,420,358	-				+0.3
1,420,359	-				-1.5
1,420,361	+				-0.4
1,420,361	+				-0.4
1,420,361	+				+1.2
1,420,361	+				-0.6
1,420,366	-				-0.8
1,420,369	-				+0.5
1,420,379	-				-0.5
1,420,404	+				+0.4
1,420,404	+				+0.3
1,420,404	+				-0.3
1,420,412	-				-0.6
1,420,412	-				-1.7
1,420,412	-				-0.6
1,420,449	-				-2.4
1,420,463	+				+1.1
1,420,464	+				-3.3
1,420,517	+				-0.2
1,420,517	+				-1.7
1,420,525	-				+0.1
1,420,529	+				+1.4
1,420,529	+				-0.5
1,420,537	-				-0.7
1,420,547	-				+0.2
1,420,561	+				+0.3
1,420,561	+				+1.4
1,420,562	-				+0.4
1,420,569	-				-2.1
1,420,588	-				-1.6
1,420,603	-				-1.3
1,420,605	-				+0.3
1,420,607	+				-0.6
1,420,607	+				-0.1
1,420,607	+				+0.9
1,420,607	+				-1.6
1,420,607	+				-0.3
1,420,607	+				+0.5
1,420,607	+				+0.6
1,420,607	+				+0.8
1,420,607	+				+0.2
1,420,607	+				-2.5
1,420,607	+				+0.0
1,420,607	+				+0.1
1,420,607	+				-1.0
1,420,607	+				+0.4
1,420,607	+				-0.9
1,420,607	+				+0.3
1,420,607	+				-1.9
1,420,607	+				-0.9
1,420,607	+				+1.0
1,420,607	+				+0.6
1,420,607	+				-0.4
1,420,607	+				+0.1
1,420,607	+				-1.1
1,420,607	+				-0.3
1,420,607	+				-0.8
1,420,607	+				-0.8
1,420,607	+				-2.0
1,420,607	+				+0.6
1,420,607	+				-1.5
1,420,615	-				-0.8
1,420,615	-				-0.1
1,420,615	-				-1.8
1,420,615	-				+1.0
1,420,615	-				-1.1
1,420,615	-				-0.2
1,420,615	-				+0.1
1,420,615	-				-0.4
1,420,615	-				+0.6
1,420,615	-				+0.9
1,420,615	-				+1.2
1,420,615	-				+1.8
1,420,615	-				+0.5
1,420,615	-				-0.1
1,420,615	-				-1.8
1,420,615	-				-1.1
1,420,615	-				-0.3
1,420,615	-				+0.2
1,420,615	-				+0.8
1,420,615	-				+0.5
1,420,615	-				-1.8
1,420,615	-				-1.7
1,420,615	-				-0.3
1,420,615	-				-2.1
1,420,615	-				+1.5
1,420,615	-				-2.1
1,420,615	-				-1.3
1,420,615	-				-0.3
1,420,615	-				-1.2
1,420,615	-				+0.8
1,420,615	-				+0.5
1,420,615	-				-0.5
1,420,615	-				-0.5
1,420,619	+				-1.7
1,420,627	-				+0.3
1,420,641	+				-0.1
1,420,641	+				-1.3
1,420,641	+				+0.3
1,420,641	+				+0.7
1,420,649	-				+1.0
1,420,649	-				-0.4
1,420,649	-				-1.1
1,420,668	+				-2.3
1,420,672	+				-1.5
1,420,672	+				-1.9
1,420,680	+				-1.5
1,420,680	+				-0.1
1,420,680	+				-0.6
1,420,680	+				-1.8
1,420,680	+				+0.4
1,420,680	+				+0.5
1,420,680	+				-0.1
1,420,680	+				-1.0
1,420,680	-				-1.3
1,420,685	+				-0.7
1,420,688	-				-1.1
1,420,688	-				+0.3
1,420,688	-				+0.5
1,420,688	-				+1.3
1,420,690	+				+0.4
1,420,695	+				+0.0
1,420,703	-				-0.6
1,420,745	+		GFF1394	0.11	-1.0
1,420,745	+		GFF1394	0.11	-1.4
1,420,750	+		GFF1394	0.11	-0.4
1,420,750	+		GFF1394	0.11	+1.2
1,420,750	+		GFF1394	0.11	-0.1
1,420,750	+		GFF1394	0.11	+0.9
1,420,750	+		GFF1394	0.11	-0.8
1,420,758	-		GFF1394	0.11	-0.0
1,420,758	-		GFF1394	0.11	+0.7
1,420,758	-		GFF1394	0.11	+0.1
1,420,758	-		GFF1394	0.11	-0.3
1,420,758	-		GFF1394	0.11	+0.8
1,420,765	+		GFF1394	0.12	+0.9
1,420,765	+		GFF1394	0.12	-0.4
1,420,765	+		GFF1394	0.12	-0.9
1,420,765	+		GFF1394	0.12	+0.6
1,420,773	-		GFF1394	0.12	+0.3
1,420,773	-		GFF1394	0.12	+0.5
1,420,796	+		GFF1394	0.13	-0.5
1,420,802	+		GFF1394	0.13	+0.6
1,420,810	-		GFF1394	0.14	-1.5
1,420,812	+		GFF1394	0.14	+0.0
1,420,824	+		GFF1394	0.14	-0.2
1,420,824	+		GFF1394	0.14	-1.6
1,420,824	+		GFF1394	0.14	+0.5
1,420,827	-		GFF1394	0.15	-1.3
1,420,829	+		GFF1394	0.15	+0.9
1,420,832	-		GFF1394	0.15	-3.3
1,420,832	-		GFF1394	0.15	-0.1
1,420,837	-		GFF1394	0.15	-0.7
1,420,837	-		GFF1394	0.15	-1.4
1,420,837	-		GFF1394	0.15	-0.2
1,420,845	-		GFF1394	0.15	-1.3
1,420,872	+		GFF1394	0.17	-0.1
1,420,872	+		GFF1394	0.17	+0.2
1,420,880	-		GFF1394	0.17	-0.9
1,420,880	-		GFF1394	0.17	+0.1
1,420,880	-		GFF1394	0.17	-2.0
1,420,880	-		GFF1394	0.17	-1.7
1,420,880	-		GFF1394	0.17	+0.3
1,420,880	-		GFF1394	0.17	-0.1
1,420,880	-		GFF1394	0.17	+1.0
1,420,909	+		GFF1394	0.19	-0.7
1,420,911	-		GFF1394	0.19	+0.2
1,420,917	-		GFF1394	0.19	+0.9
1,420,930	-		GFF1394	0.20	-1.5
1,420,974	+		GFF1394	0.22	-1.4
1,420,975	+		GFF1394	0.22	-1.5
1,420,982	-		GFF1394	0.22	+0.1
1,420,982	-		GFF1394	0.22	-0.7
1,420,999	+		GFF1394	0.23	-0.9
1,421,012	-		GFF1394	0.24	+0.2
1,421,034	-		GFF1394	0.25	+1.2
1,421,058	+		GFF1394	0.26	-1.5
1,421,071	-		GFF1394	0.26	-0.4
1,421,075	+		GFF1394	0.27	-0.8
1,421,083	+		GFF1394	0.27	+0.3
1,421,083	+		GFF1394	0.27	+0.5
1,421,083	+		GFF1394	0.27	-0.8
1,421,091	-		GFF1394	0.27	-0.0
1,421,091	-		GFF1394	0.27	-0.2
1,421,091	-		GFF1394	0.27	+0.2
1,421,091	-		GFF1394	0.27	+0.9
1,421,091	-		GFF1394	0.27	+0.8
1,421,091	-		GFF1394	0.27	-1.6
1,421,112	-		GFF1394	0.28	-0.9
1,421,127	+		GFF1394	0.29	+0.3
1,421,155	-		GFF1394	0.30	+0.4
1,421,169	+		GFF1394	0.31	-2.3
1,421,227	+		GFF1394	0.34	-0.3
1,421,235	-		GFF1394	0.34	-1.9
1,421,248	+		GFF1394	0.35	+0.8
1,421,260	+		GFF1394	0.35	-0.9
1,421,267	-		GFF1394	0.36	-1.2
1,421,268	-		GFF1394	0.36	-0.6
1,421,273	-		GFF1394	0.36	-0.0
1,421,283	+		GFF1394	0.37	-1.3
1,421,283	+		GFF1394	0.37	+0.2
1,421,290	-		GFF1394	0.37	+0.1
1,421,290	-		GFF1394	0.37	+0.7
1,421,291	-		GFF1394	0.37	-0.5
1,421,291	-		GFF1394	0.37	-1.5
1,421,291	-		GFF1394	0.37	-0.7
1,421,291	-		GFF1394	0.37	-1.2
1,421,323	+		GFF1394	0.38	-1.4
1,421,348	-		GFF1394	0.40	+0.1
1,421,374	-		GFF1394	0.41	-0.9
1,421,381	+		GFF1394	0.41	-0.1
1,421,381	+		GFF1394	0.41	+0.9
1,421,381	+		GFF1394	0.41	-0.4
1,421,426	+		GFF1394	0.43	+0.8
1,421,434	-		GFF1394	0.44	-1.7
1,421,453	-		GFF1394	0.45	-0.7
1,421,455	-		GFF1394	0.45	-1.3
1,421,474	-		GFF1394	0.46	+1.8
1,421,474	-		GFF1394	0.46	-0.0
1,421,493	+		GFF1394	0.47	+0.5
1,421,493	+		GFF1394	0.47	+0.7
1,421,493	+		GFF1394	0.47	+0.3
1,421,493	+		GFF1394	0.47	+0.5
1,421,494	+		GFF1394	0.47	-0.2
1,421,501	-		GFF1394	0.47	-0.8
1,421,502	-		GFF1394	0.47	-1.0
1,421,502	-		GFF1394	0.47	-0.4
1,421,502	-		GFF1394	0.47	-0.6
1,421,505	+		GFF1394	0.47	-1.0
1,421,513	-		GFF1394	0.48	-0.5
1,421,523	+		GFF1394	0.48	-1.3
1,421,531	-		GFF1394	0.49	-0.8
1,421,536	-		GFF1394	0.49	-1.9
1,421,546	-		GFF1394	0.49	-1.9
1,421,549	-		GFF1394	0.49	-0.9
1,421,557	+		GFF1394	0.50	-0.2
1,421,579	+		GFF1394	0.51	-1.1
1,421,585	+		GFF1394	0.51	+0.6
1,421,587	-		GFF1394	0.51	+0.5
1,421,590	+		GFF1394	0.51	-0.1
1,421,598	+		GFF1394	0.52	-0.3
1,421,616	+		GFF1394	0.53	-0.1
1,421,616	+		GFF1394	0.53	-0.2
1,421,616	+		GFF1394	0.53	-1.2
1,421,616	+		GFF1394	0.53	+0.3
1,421,616	+		GFF1394	0.53	-0.6
1,421,616	+		GFF1394	0.53	-1.2
1,421,616	+		GFF1394	0.53	+0.1
1,421,624	-		GFF1394	0.53	+1.1
1,421,624	-		GFF1394	0.53	-0.7
1,421,624	-		GFF1394	0.53	-0.4
1,421,648	-		GFF1394	0.54	-0.0
1,421,677	-		GFF1394	0.56	-0.1
1,421,679	+		GFF1394	0.56	-2.5
1,421,687	-		GFF1394	0.56	-0.7
1,421,702	+		GFF1394	0.57	-0.9
1,421,708	+		GFF1394	0.57	-0.4
1,421,709	+		GFF1394	0.57	-0.4
1,421,723	+		GFF1394	0.58	-2.1
1,421,723	+		GFF1394	0.58	-0.9
1,421,746	-		GFF1394	0.59	+1.1
1,421,757	+		GFF1394	0.59	+0.4
1,421,763	-		GFF1394	0.60	-0.8
1,421,778	+		GFF1394	0.60	-1.2
1,421,797	+		GFF1394	0.61	-0.9
1,421,807	+		GFF1394	0.62	+0.1
1,421,815	-		GFF1394	0.62	+0.3
1,421,843	+		GFF1394	0.64	-0.6
1,421,860	+		GFF1394	0.64	-1.2
1,421,861	+		GFF1394	0.64	+0.2
1,421,861	+		GFF1394	0.64	-1.0
1,421,865	+		GFF1394	0.65	-0.2
1,421,921	+		GFF1394	0.67	-0.3
1,421,951	+		GFF1394	0.69	-0.4
1,421,969	-		GFF1394	0.70	+0.1
1,421,969	-		GFF1394	0.70	-0.3
1,421,969	-		GFF1394	0.70	-0.5
1,421,981	+		GFF1394	0.70	-0.7
1,421,999	+		GFF1394	0.71	-1.0
1,422,022	+		GFF1394	0.72	+0.3
1,422,024	-		GFF1394	0.72	-0.8
1,422,032	+		GFF1394	0.73	-0.6
1,422,032	+		GFF1394	0.73	-0.6
1,422,033	+		GFF1394	0.73	-0.3
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1,422,347	-		GFF1394	0.88	-0.7
1,422,375	+		GFF1394	0.89	+0.3
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1,422,421	-				-0.3
1,422,426	+				+0.1
1,422,427	+				-0.8
1,422,427	-				-1.0
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1,422,436	+				-0.6
1,422,461	+				-0.3
1,422,461	+				-0.6
1,422,461	+				+0.3
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1,422,466	+				-0.5
1,422,469	-				-0.7
1,422,469	-				-1.8
1,422,469	-				-3.2
1,422,469	-				-0.8
1,422,476	+				-1.4
1,422,482	-				-0.6
1,422,488	-				+0.9
1,422,491	-				+0.1
1,422,503	+				+1.6
1,422,529	+				-1.6
1,422,529	+				+0.1
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1,422,542	-				+0.6
1,422,549	-				-1.8
1,422,549	-				-0.5
1,422,549	-				-2.2
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1,422,575	+				+1.0
1,422,575	+				-0.6
1,422,575	+				+0.7
1,422,575	+				-0.9
1,422,575	+				-0.9
1,422,575	+				-0.5
1,422,575	+				+0.5
1,422,575	+				-0.5
1,422,575	+				+0.6
1,422,575	+				-2.2
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1,422,582	+				+0.2
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1,422,583	-				-0.9
1,422,583	-				-0.2
1,422,583	-				+0.8
1,422,583	-				-2.0
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1,422,583	-				-0.4
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1,422,649	+				+0.1
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1,422,701	-				+1.5
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1,422,864	+		GFF1395	0.23	-2.1
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1,423,374	+		GFF1395	0.67	-2.6
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1,423,399	+		GFF1395	0.70	-2.1
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1,423,407	-		GFF1395	0.70	-1.6
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