Strain Fitness in Sphingobium sp. HT1-2 around GFF1383

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,405,795	-		GFF1381	0.70	-0.0
1,405,801	-		GFF1381	0.71	+0.1
1,405,804	-		GFF1381	0.71	-0.3
1,405,806	+		GFF1381	0.71	-0.7
1,405,820	+		GFF1381	0.72	-0.8
1,405,820	+		GFF1381	0.72	-0.2
1,405,820	+		GFF1381	0.72	-0.8
1,405,820	+		GFF1381	0.72	+0.1
1,405,820	+		GFF1381	0.72	+0.3
1,405,823	+		GFF1381	0.72	+0.4
1,405,828	-		GFF1381	0.73	-0.9
1,405,828	-		GFF1381	0.73	-0.2
1,405,828	-		GFF1381	0.73	-0.6
1,405,828	-		GFF1381	0.73	-0.3
1,405,828	-		GFF1381	0.73	-0.5
1,405,828	-		GFF1381	0.73	-0.1
1,405,911	+		GFF1381	0.80	+1.4
1,405,912	-		GFF1381	0.80	-0.7
1,405,918	-		GFF1381	0.80	+1.0
1,405,923	+		GFF1381	0.81	+0.2
1,405,928	+		GFF1381	0.81	+0.1
1,405,931	-		GFF1381	0.82	+0.9
1,405,936	-		GFF1381	0.82	-0.3
1,405,936	-		GFF1381	0.82	+0.5
1,405,936	-		GFF1381	0.82	+0.2
1,405,936	-		GFF1381	0.82	-1.4
1,405,952	+		GFF1381	0.83	-0.8
1,405,952	+		GFF1381	0.83	+0.7
1,405,960	-		GFF1381	0.84	-1.2
1,405,982	-		GFF1381	0.86	-3.0
1,405,985	+		GFF1381	0.86	+0.4
1,405,988	+		GFF1381	0.86	-1.2
1,405,988	-		GFF1381	0.86	-1.6
1,406,014	+		GFF1381	0.89	+0.9
1,406,014	+		GFF1381	0.89	-0.8
1,406,037	+				+0.2
1,406,038	-				-1.5
1,406,047	+				-0.9
1,406,057	+				+0.4
1,406,057	+				-0.6
1,406,060	-				+0.2
1,406,065	-				+0.3
1,406,084	-				-0.2
1,406,104	+				-1.4
1,406,130	+				+0.9
1,406,130	+				-1.6
1,406,138	-				-0.6
1,406,138	-				+0.6
1,406,138	-				+0.7
1,406,138	-				+0.6
1,406,138	-				-1.7
1,406,138	-				+0.3
1,406,143	+				-1.7
1,406,189	+				-0.1
1,406,198	-				-0.8
1,406,247	+				-0.5
1,406,257	+				+0.6
1,406,265	-				-1.1
1,406,301	-		GFF1382	0.14	+0.3
1,406,307	-		GFF1382	0.15	+0.3
1,406,358	-		GFF1382	0.24	-0.8
1,406,371	+		GFF1382	0.26	-0.2
1,406,373	-		GFF1382	0.27	-1.6
1,406,378	-		GFF1382	0.27	-1.2
1,406,392	-		GFF1382	0.30	-0.9
1,406,397	+		GFF1382	0.31	+0.7
1,406,402	+		GFF1382	0.32	-1.1
1,406,407	+		GFF1382	0.32	-0.4
1,406,439	-		GFF1382	0.38	+0.1
1,406,439	-		GFF1382	0.38	+0.2
1,406,444	+		GFF1382	0.39	-0.8
1,406,447	+		GFF1382	0.39	+0.5
1,406,452	-		GFF1382	0.40	-0.4
1,406,452	-		GFF1382	0.40	-0.0
1,406,472	-		GFF1382	0.44	+0.1
1,406,481	+		GFF1382	0.45	-0.6
1,406,501	+		GFF1382	0.49	-0.2
1,406,501	+		GFF1382	0.49	-1.9
1,406,501	+		GFF1382	0.49	-1.1
1,406,501	+		GFF1382	0.49	+0.6
1,406,509	-		GFF1382	0.50	+0.1
1,406,541	-		GFF1382	0.56	-2.0
1,406,566	+		GFF1382	0.60	+1.1
1,406,576	+		GFF1382	0.62	+0.2
1,406,576	+		GFF1382	0.62	-0.4
1,406,576	+		GFF1382	0.62	-1.5
1,406,581	+		GFF1382	0.63	-0.8
1,406,581	+		GFF1382	0.63	-1.0
1,406,589	-		GFF1382	0.64	-1.7
1,406,589	-		GFF1382	0.64	+0.8
1,406,594	-		GFF1382	0.65	+0.8
1,406,617	+		GFF1382	0.69	-0.7
1,406,617	+		GFF1382	0.69	-0.9
1,406,617	+		GFF1382	0.69	-0.9
1,406,617	+		GFF1382	0.69	+0.2
1,406,625	-		GFF1382	0.70	-0.2
1,406,625	-		GFF1382	0.70	-0.9
1,406,625	-		GFF1382	0.70	-0.2
1,406,625	-		GFF1382	0.70	+0.8
1,406,685	+		GFF1382	0.80	+1.0
1,406,702	+		GFF1382	0.83	+0.3
1,406,707	+		GFF1382	0.84	-1.0
1,406,707	+		GFF1382	0.84	-0.9
1,406,710	-		GFF1382	0.85	+0.2
1,406,710	-		GFF1382	0.85	-0.5
1,406,710	-		GFF1382	0.85	+0.2
1,406,726	+		GFF1382	0.88	-0.5
1,406,726	+		GFF1382	0.88	+0.4
1,406,742	+				+0.4
1,406,747	+				+0.1
1,406,748	+				-0.0
1,406,748	+				+0.9
1,406,748	+				-0.2
1,406,748	+				-1.8
1,406,756	-				+0.2
1,406,756	-				-1.1
1,406,756	-				-0.7
1,406,756	-				-0.3
1,406,756	-				+0.6
1,406,758	+				-1.2
1,406,758	+				-1.5
1,406,765	+				+0.5
1,406,766	-				-1.2
1,406,766	-				+0.1
1,406,773	-				+0.6
1,406,781	+				-1.8
1,406,809	+				-1.3
1,406,842	+				-1.3
1,406,851	-				-0.9
1,406,867	-				+0.2
1,406,878	+				-0.5
1,406,880	+				-1.9
1,406,880	+				-1.0
1,406,895	+		GFF1383	0.11	-1.9
1,406,895	+		GFF1383	0.11	+0.1
1,406,898	-		GFF1383	0.11	-0.1
1,406,903	-		GFF1383	0.12	+1.3
1,406,907	+		GFF1383	0.12	+0.5
1,406,909	-		GFF1383	0.12	-0.6
1,406,912	+		GFF1383	0.13	+0.1
1,406,912	+		GFF1383	0.13	-0.6
1,406,912	+		GFF1383	0.13	-1.8
1,406,912	+		GFF1383	0.13	-0.3
1,406,912	+		GFF1383	0.13	-0.1
1,406,912	+		GFF1383	0.13	+0.6
1,406,917	+		GFF1383	0.13	+0.1
1,406,920	-		GFF1383	0.13	+0.5
1,406,920	-		GFF1383	0.13	-1.1
1,406,920	-		GFF1383	0.13	-1.4
1,406,920	-		GFF1383	0.13	+0.4
1,406,920	-		GFF1383	0.13	+0.1
1,406,920	-		GFF1383	0.13	+0.1
1,406,920	-		GFF1383	0.13	+0.8
1,406,920	-		GFF1383	0.13	-0.7
1,406,920	-		GFF1383	0.13	-0.1
1,406,920	-		GFF1383	0.13	-0.8
1,406,920	-		GFF1383	0.13	-0.1
1,406,925	+		GFF1383	0.14	-1.7
1,406,925	-		GFF1383	0.14	-0.6
1,406,925	-		GFF1383	0.14	-0.9
1,406,940	+		GFF1383	0.15	-0.2
1,406,948	-		GFF1383	0.16	-0.9
1,407,000	+		GFF1383	0.22	+0.1
1,407,000	+		GFF1383	0.22	-1.8
1,407,000	+		GFF1383	0.22	-0.8
1,407,011	+		GFF1383	0.23	-0.6
1,407,011	+		GFF1383	0.23	+1.5
1,407,014	-		GFF1383	0.23	+0.6
1,407,031	+		GFF1383	0.25	+0.1
1,407,032	+		GFF1383	0.25	+0.1
1,407,066	-		GFF1383	0.29	-0.3
1,407,066	-		GFF1383	0.29	-0.6
1,407,090	+		GFF1383	0.31	+0.4
1,407,093	+		GFF1383	0.32	-0.5
1,407,103	+		GFF1383	0.33	+0.6
1,407,103	+		GFF1383	0.33	-1.9
1,407,123	+		GFF1383	0.35	-1.6
1,407,131	-		GFF1383	0.36	+0.3
1,407,154	-		GFF1383	0.38	+0.2
1,407,164	-		GFF1383	0.39	+0.4
1,407,164	-		GFF1383	0.39	+0.9
1,407,168	-		GFF1383	0.40	+0.2
1,407,187	+		GFF1383	0.42	-0.1
1,407,190	-		GFF1383	0.42	-0.6
1,407,190	-		GFF1383	0.42	-0.3
1,407,209	+		GFF1383	0.44	-0.1
1,407,217	-		GFF1383	0.45	+0.7
1,407,233	-		GFF1383	0.47	-0.0
1,407,239	+		GFF1383	0.47	-2.3
1,407,248	+		GFF1383	0.48	-0.8
1,407,248	+		GFF1383	0.48	-1.5
1,407,307	-		GFF1383	0.54	-0.5
1,407,309	+		GFF1383	0.55	-0.5
1,407,309	+		GFF1383	0.55	-1.6
1,407,309	+		GFF1383	0.55	-0.9
1,407,309	+		GFF1383	0.55	-0.6
1,407,309	+		GFF1383	0.55	-0.3
1,407,314	+		GFF1383	0.55	-0.3
1,407,317	-		GFF1383	0.56	+0.5
1,407,317	-		GFF1383	0.56	-2.3
1,407,322	-		GFF1383	0.56	-0.5
1,407,358	+		GFF1383	0.60	-1.7
1,407,376	-		GFF1383	0.62	+0.2
1,407,376	-		GFF1383	0.62	+0.6
1,407,378	-		GFF1383	0.62	+0.1
1,407,391	-		GFF1383	0.63	-0.3
1,407,398	+		GFF1383	0.64	-0.8
1,407,398	+		GFF1383	0.64	+0.2
1,407,398	+		GFF1383	0.64	-0.6
1,407,406	+		GFF1383	0.65	+0.8
1,407,406	-		GFF1383	0.65	+0.1
1,407,406	-		GFF1383	0.65	+0.4
1,407,406	-		GFF1383	0.65	+0.9
1,407,406	-		GFF1383	0.65	-0.6
1,407,406	-		GFF1383	0.65	+0.6
1,407,414	-		GFF1383	0.66	-0.9
1,407,414	-		GFF1383	0.66	-0.2
1,407,423	+		GFF1383	0.67	+0.5
1,407,428	+		GFF1383	0.67	+1.0
1,407,429	-		GFF1383	0.67	-0.5
1,407,431	-		GFF1383	0.68	+0.6
1,407,436	+		GFF1383	0.68	+0.5
1,407,436	-		GFF1383	0.68	-1.4
1,407,436	-		GFF1383	0.68	-1.8
1,407,438	+		GFF1383	0.68	-0.7
1,407,438	+		GFF1383	0.68	-1.0
1,407,438	+		GFF1383	0.68	-0.3
1,407,438	+		GFF1383	0.68	-1.8
1,407,438	+		GFF1383	0.68	-1.6
1,407,439	-		GFF1383	0.68	+0.9
1,407,441	-		GFF1383	0.69	+0.6
1,407,446	-		GFF1383	0.69	-1.6
1,407,446	-		GFF1383	0.69	-0.4
1,407,446	-		GFF1383	0.69	-1.3
1,407,446	-		GFF1383	0.69	+0.1
1,407,446	-		GFF1383	0.69	-0.5
1,407,446	-		GFF1383	0.69	-1.3
1,407,462	-		GFF1383	0.71	+0.5
1,407,470	-		GFF1383	0.72	+0.1
1,407,476	-		GFF1383	0.72	-0.7
1,407,476	-		GFF1383	0.72	+0.9
1,407,476	-		GFF1383	0.72	-0.5
1,407,516	-		GFF1383	0.77	-0.4
1,407,522	-		GFF1383	0.77	-0.6
1,407,534	+		GFF1383	0.79	-0.4
1,407,536	+		GFF1383	0.79	-0.3
1,407,536	+		GFF1383	0.79	+0.2
1,407,541	+		GFF1383	0.79	+0.5
1,407,544	-		GFF1383	0.80	+0.4
1,407,544	-		GFF1383	0.80	-0.1
1,407,553	+		GFF1383	0.81	+1.2
1,407,559	-		GFF1383	0.81	-0.9
1,407,586	+		GFF1383	0.84	+0.3
1,407,609	+		GFF1383	0.87	+0.5
1,407,609	+		GFF1383	0.87	-1.9
1,407,610	+		GFF1383	0.87	+0.1
1,407,627	-		GFF1383	0.88	-1.5
1,407,637	-		GFF1383	0.89	-0.8
1,407,642	+				+0.1
1,407,644	+				-2.1
1,407,644	+				+0.5
1,407,650	-				-1.6
1,407,652	-				-0.4
1,407,652	-				-1.3
1,407,657	-				-2.6
1,407,671	+				-1.5
1,407,676	+				-1.5
1,407,679	-				+1.8
1,407,679	-				-0.9
1,407,689	-				-0.4
1,407,693	+				+0.7
1,407,701	-				-0.2
1,407,710	+				-0.5
1,407,710	+				-2.0
1,407,710	+				-0.3
1,407,718	-				-1.4
1,407,718	-				-0.9
1,407,723	-				-0.5
1,407,724	-				+1.3
1,407,728	-				-0.5
1,407,733	+				-1.8
1,407,733	+				+0.2
1,407,741	-				-1.6
1,407,741	-				-1.3
1,407,741	-				+0.7
1,407,741	-				-0.9
1,407,741	-				+0.1
1,407,741	-				+1.3
1,407,741	-				+0.3
1,407,741	-				+0.2
1,407,757	+				-0.4
1,407,783	-				+1.3
1,407,785	+				-0.1
1,407,788	-				-1.2
1,407,789	-				-0.4
1,407,795	-				-0.6
1,407,797	+				+0.7
1,407,804	+				-0.0
1,407,806	-				+1.1
1,407,812	-		GFF1384	0.10	-0.1
1,407,828	+		GFF1384	0.12	+0.3
1,407,830	-		GFF1384	0.13	-0.5
1,407,836	-		GFF1384	0.13	-0.2
1,407,837	+		GFF1384	0.14	-0.7
1,407,844	+		GFF1384	0.14	+0.4
1,407,844	+		GFF1384	0.14	+0.5
1,407,845	-		GFF1384	0.15	-0.1
1,407,850	-		GFF1384	0.15	+0.1
1,407,873	+		GFF1384	0.18	-1.6
1,407,880	+		GFF1384	0.19	-0.6
1,407,884	+		GFF1384	0.20	-0.2
1,407,890	+		GFF1384	0.20	-0.8
1,407,905	-		GFF1384	0.22	-1.4
1,407,905	-		GFF1384	0.22	+1.1
1,407,912	+		GFF1384	0.23	+0.3
1,407,915	+		GFF1384	0.24	-0.3
1,407,920	+		GFF1384	0.24	-1.2
1,407,928	-		GFF1384	0.25	-1.1
1,407,945	-		GFF1384	0.28	-0.8
1,407,947	-		GFF1384	0.28	+0.1
1,407,959	-		GFF1384	0.29	+0.3
1,407,994	+		GFF1384	0.34	+0.2
1,407,995	+		GFF1384	0.34	-1.3
1,408,000	+		GFF1384	0.35	-1.3
1,408,002	-		GFF1384	0.35	-0.5
1,408,008	-		GFF1384	0.36	-0.4
1,408,012	-		GFF1384	0.36	-0.6
1,408,012	-		GFF1384	0.36	-1.1
1,408,028	-		GFF1384	0.38	-1.2
1,408,048	+		GFF1384	0.41	-0.4
1,408,049	+		GFF1384	0.41	+0.1
1,408,050	+		GFF1384	0.41	-2.3
1,408,073	+		GFF1384	0.44	-1.2
1,408,104	-		GFF1384	0.48	-0.9
1,408,116	+		GFF1384	0.50	-0.2
1,408,120	+		GFF1384	0.50	-1.4
1,408,120	+		GFF1384	0.50	-0.1
1,408,120	+		GFF1384	0.50	-1.0
1,408,120	+		GFF1384	0.50	+1.3
1,408,120	+		GFF1384	0.50	-3.5
1,408,128	-		GFF1384	0.51	+0.6
1,408,128	-		GFF1384	0.51	-1.2
1,408,128	-		GFF1384	0.51	-1.9
1,408,128	-		GFF1384	0.51	-0.3
1,408,135	+		GFF1384	0.52	-0.8
1,408,135	+		GFF1384	0.52	-1.6
1,408,135	+		GFF1384	0.52	+0.3
1,408,135	+		GFF1384	0.52	-0.4
1,408,135	+		GFF1384	0.52	+0.1
1,408,135	+		GFF1384	0.52	-0.9
1,408,135	+		GFF1384	0.52	-0.9
1,408,135	+		GFF1384	0.52	-0.5
1,408,135	+		GFF1384	0.52	-0.5
1,408,135	+		GFF1384	0.52	-0.9
1,408,135	+		GFF1384	0.52	-0.0
1,408,135	+		GFF1384	0.52	-2.4
1,408,135	+		GFF1384	0.52	-1.5
1,408,135	+		GFF1384	0.52	-1.5
1,408,135	+		GFF1384	0.52	-1.1
1,408,135	+		GFF1384	0.52	-0.8
1,408,140	+		GFF1384	0.53	-0.2
1,408,143	-		GFF1384	0.53	-0.7
1,408,143	-		GFF1384	0.53	-0.9
1,408,143	-		GFF1384	0.53	+0.1
1,408,143	-		GFF1384	0.53	-1.4
1,408,143	-		GFF1384	0.53	+0.2
1,408,143	-		GFF1384	0.53	-0.4
1,408,143	-		GFF1384	0.53	-1.0
1,408,143	-		GFF1384	0.53	+0.2
1,408,143	-		GFF1384	0.53	-0.1
1,408,143	-		GFF1384	0.53	-1.3
1,408,143	-		GFF1384	0.53	-2.3
1,408,143	-		GFF1384	0.53	+0.6
1,408,143	-		GFF1384	0.53	+0.9
1,408,145	+		GFF1384	0.53	-0.5
1,408,148	-		GFF1384	0.54	-0.5
1,408,153	-		GFF1384	0.54	-2.7
1,408,153	-		GFF1384	0.54	-0.5
1,408,153	-		GFF1384	0.54	-0.5
1,408,153	-		GFF1384	0.54	-0.6
1,408,156	+		GFF1384	0.55	-0.1
1,408,156	+		GFF1384	0.55	+0.8
1,408,164	-		GFF1384	0.56	-0.9
1,408,164	-		GFF1384	0.56	+0.1
1,408,164	-		GFF1384	0.56	-1.1
1,408,166	+		GFF1384	0.56	-1.3
1,408,167	+		GFF1384	0.56	+0.4
1,408,169	-		GFF1384	0.56	-0.2
1,408,171	+		GFF1384	0.57	-0.4
1,408,174	-		GFF1384	0.57	+0.1
1,408,174	-		GFF1384	0.57	-0.3
1,408,174	-		GFF1384	0.57	-0.3
1,408,174	-		GFF1384	0.57	+0.9
1,408,174	-		GFF1384	0.57	+0.7
1,408,175	-		GFF1384	0.57	-1.6
1,408,176	-		GFF1384	0.57	-1.1
1,408,185	-		GFF1384	0.59	-0.3
1,408,215	+		GFF1384	0.62	-1.7
1,408,238	-		GFF1384	0.65	-1.4
1,408,251	-		GFF1384	0.67	-0.7
1,408,251	-		GFF1384	0.67	-1.2
1,408,261	-		GFF1384	0.68	+0.2
1,408,277	-		GFF1384	0.70	+1.2
1,408,277	-		GFF1384	0.70	-0.6
1,408,298	-		GFF1384	0.73	-2.4
1,408,300	-		GFF1384	0.73	-0.5
1,408,302	+		GFF1384	0.74	-1.3
1,408,322	-		GFF1384	0.76	+0.1
1,408,322	-		GFF1384	0.76	+0.9
1,408,332	+		GFF1384	0.78	+0.5
1,408,344	+		GFF1384	0.79	+0.8
1,408,345	+		GFF1384	0.79	+0.0
1,408,389	+		GFF1384	0.85	-1.7
1,408,419	-		GFF1384	0.89	-0.6
1,408,445	+				-1.2
1,408,452	+				-0.8
1,408,462	-				+0.1
1,408,464	+				+0.4
1,408,486	-				+0.6
1,408,493	+				-0.9
1,408,501	+				+0.9
1,408,503	+				-1.5
1,408,503	+				+0.4
1,408,503	+				-2.2
1,408,513	+				-1.2
1,408,514	-				-1.4
1,408,520	-				+1.1
1,408,557	-				-1.1
1,408,557	-				-0.3
1,408,580	-				+1.3
1,408,581	-				-0.1
1,408,583	+		GFF1385	0.10	+0.7
1,408,592	+		GFF1385	0.12	-1.5
1,408,606	+		GFF1385	0.14	-0.2
1,408,640	+		GFF1385	0.19	-1.5
1,408,673	-		GFF1385	0.24	+0.2
1,408,681	+		GFF1385	0.25	+0.8
1,408,688	+		GFF1385	0.26	-1.1
1,408,688	+		GFF1385	0.26	-0.5
1,408,688	+		GFF1385	0.26	-1.9
1,408,693	+		GFF1385	0.27	-1.8
1,408,696	-		GFF1385	0.27	-0.4
1,408,696	-		GFF1385	0.27	-0.5
1,408,696	-		GFF1385	0.27	-0.5
1,408,696	-		GFF1385	0.27	+0.1
1,408,696	-		GFF1385	0.27	-0.5
1,408,696	-		GFF1385	0.27	-1.6
1,408,698	+		GFF1385	0.27	-1.8
1,408,698	+		GFF1385	0.27	-2.5
1,408,698	+		GFF1385	0.27	-1.0
1,408,698	+		GFF1385	0.27	+0.5
1,408,698	+		GFF1385	0.27	+0.4
1,408,698	+		GFF1385	0.27	-1.8
1,408,698	+		GFF1385	0.27	-3.2
1,408,698	+		GFF1385	0.27	-0.5
1,408,701	-		GFF1385	0.28	-1.4
1,408,701	-		GFF1385	0.28	-0.0
1,408,701	-		GFF1385	0.28	-0.1
1,408,706	-		GFF1385	0.29	+0.9
1,408,706	-		GFF1385	0.29	+0.8
1,408,706	-		GFF1385	0.29	+0.6
1,408,706	-		GFF1385	0.29	-0.8
1,408,706	-		GFF1385	0.29	+0.1
1,408,706	-		GFF1385	0.29	-0.4