Strain Fitness in Sphingobium sp. HT1-2 around GFF1368

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,389,894	+		GFF1366	0.49	+0.6
1,389,914	+		GFF1366	0.51	+0.2
1,389,922	-		GFF1366	0.52	-1.0
1,389,922	-		GFF1366	0.52	-2.6
1,389,922	-		GFF1366	0.52	-3.6
1,389,941	-		GFF1366	0.53	+1.2
1,389,941	-		GFF1366	0.53	+0.1
1,389,977	-		GFF1366	0.56	+0.6
1,390,012	+		GFF1366	0.59	+0.2
1,390,054	-		GFF1366	0.62	-0.5
1,390,111	+		GFF1366	0.67	-0.1
1,390,119	-		GFF1366	0.67	-1.2
1,390,166	-		GFF1366	0.71	-0.4
1,390,170	+		GFF1366	0.72	+0.9
1,390,178	-		GFF1366	0.72	+0.1
1,390,178	-		GFF1366	0.72	-0.7
1,390,178	-		GFF1366	0.72	-0.4
1,390,187	+		GFF1366	0.73	+0.9
1,390,195	-		GFF1366	0.74	+0.9
1,390,198	-		GFF1366	0.74	+1.4
1,390,203	+		GFF1366	0.74	-0.9
1,390,206	-		GFF1366	0.74	-1.0
1,390,206	-		GFF1366	0.74	+0.8
1,390,206	-		GFF1366	0.74	-0.4
1,390,211	-		GFF1366	0.75	+1.9
1,390,216	-		GFF1366	0.75	-0.8
1,390,235	+		GFF1366	0.77	+0.8
1,390,235	+		GFF1366	0.77	-0.2
1,390,243	-		GFF1366	0.77	-0.4
1,390,244	-		GFF1366	0.78	-0.6
1,390,244	-		GFF1366	0.78	+0.1
1,390,246	+		GFF1366	0.78	-0.1
1,390,246	+		GFF1366	0.78	-1.3
1,390,246	+		GFF1366	0.78	+1.2
1,390,253	+		GFF1366	0.78	-0.2
1,390,254	-		GFF1366	0.78	-0.4
1,390,254	-		GFF1366	0.78	-1.5
1,390,288	-		GFF1366	0.81	-0.0
1,390,288	-		GFF1366	0.81	+1.2
1,390,288	-		GFF1366	0.81	-1.4
1,390,288	-		GFF1366	0.81	-0.0
1,390,288	-		GFF1366	0.81	-0.4
1,390,292	+		GFF1366	0.81	-0.8
1,390,299	+		GFF1366	0.82	+0.0
1,390,300	-		GFF1366	0.82	-0.2
1,390,315	+		GFF1366	0.83	+0.1
1,390,322	+		GFF1366	0.84	-0.5
1,390,322	+		GFF1366	0.84	-2.0
1,390,330	-		GFF1366	0.84	-0.7
1,390,330	-		GFF1366	0.84	+2.2
1,390,335	-		GFF1366	0.85	+0.6
1,390,352	+		GFF1366	0.86	-0.3
1,390,393	-		GFF1366	0.90	-0.5
1,390,446	+				-0.0
1,390,454	-				-1.0
1,390,454	-				-0.7
1,390,456	-				-0.1
1,390,464	-				+0.1
1,390,481	-				-0.3
1,390,496	+				-0.3
1,390,531	+				+0.5
1,390,531	+				+0.1
1,390,534	-				-1.7
1,390,539	-				+1.3
1,390,539	-				-2.5
1,390,539	-				+1.0
1,390,539	-				-0.7
1,390,539	-				+0.5
1,390,541	-				-1.1
1,390,542	-				-1.5
1,390,547	-				-1.0
1,390,547	-				+0.6
1,390,568	-				+0.8
1,390,617	+		GFF1367	0.30	+0.3
1,390,672	-		GFF1367	0.72	-0.0
1,390,672	-		GFF1367	0.72	-0.8
1,390,767	+				-0.4
1,390,832	+				-1.5
1,390,840	+				-1.7
1,390,845	+				-0.4
1,390,845	+				+0.5
1,390,845	+				+1.0
1,390,845	+				-1.2
1,390,848	-				+0.7
1,390,853	-				-0.6
1,390,853	-				+2.0
1,390,853	-				-0.7
1,390,853	-				-0.8
1,390,853	-				-0.3
1,390,875	+				+0.7
1,390,875	+				-1.0
1,390,875	+				-1.1
1,390,875	+				+0.0
1,390,875	+				+0.2
1,390,875	+				-1.7
1,390,875	+				-0.6
1,390,875	+				-1.0
1,390,875	+				-1.7
1,390,875	+				+1.3
1,390,875	+				-0.1
1,390,875	+				+0.3
1,390,877	+				+0.4
1,390,877	+				-0.2
1,390,883	-				+0.2
1,390,883	-				+1.4
1,390,883	-				-3.0
1,390,883	-				+0.9
1,390,883	-				-1.6
1,390,883	-				-0.5
1,390,883	-				-2.0
1,390,883	-				+0.5
1,390,883	-				-0.1
1,390,883	-				+0.4
1,390,883	-				-0.9
1,390,883	-				-0.5
1,390,883	-				-0.4
1,390,883	-				-0.1
1,390,956	-				-2.7
1,390,971	+				+0.6
1,390,971	+				+0.1
1,390,984	-				-0.4
1,391,035	+		GFF1368	0.12	+0.4
1,391,054	+		GFF1368	0.14	-0.3
1,391,064	+		GFF1368	0.14	+0.7
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	+0.7
1,391,069	+		GFF1368	0.15	-0.4
1,391,069	+		GFF1368	0.15	+1.3
1,391,069	+		GFF1368	0.15	-0.6
1,391,069	+		GFF1368	0.15	-2.9
1,391,069	+		GFF1368	0.15	-0.9
1,391,069	+		GFF1368	0.15	+1.0
1,391,069	+		GFF1368	0.15	-1.4
1,391,069	+		GFF1368	0.15	-0.8
1,391,069	+		GFF1368	0.15	+1.5
1,391,069	+		GFF1368	0.15	-0.9
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	-1.5
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	-0.1
1,391,072	-		GFF1368	0.15	+0.3
1,391,077	-		GFF1368	0.16	+0.4
1,391,077	-		GFF1368	0.16	-0.1
1,391,077	-		GFF1368	0.16	-0.4
1,391,077	-		GFF1368	0.16	-2.4
1,391,077	-		GFF1368	0.16	-0.6
1,391,077	-		GFF1368	0.16	-0.2
1,391,077	-		GFF1368	0.16	-0.8
1,391,077	-		GFF1368	0.16	-0.4
1,391,077	-		GFF1368	0.16	-1.8
1,391,077	-		GFF1368	0.16	-0.5
1,391,077	-		GFF1368	0.16	+0.0
1,391,078	-		GFF1368	0.16	-0.2
1,391,079	+		GFF1368	0.16	-0.7
1,391,083	-		GFF1368	0.16	+0.1
1,391,086	+		GFF1368	0.16	-0.4
1,391,087	-		GFF1368	0.16	+0.6
1,391,087	-		GFF1368	0.16	+0.3
1,391,094	-		GFF1368	0.17	-2.1
1,391,107	+		GFF1368	0.18	-0.4
1,391,112	+		GFF1368	0.19	+0.3
1,391,115	-		GFF1368	0.19	-0.4
1,391,115	-		GFF1368	0.19	-0.3
1,391,125	-		GFF1368	0.20	+0.2
1,391,143	+		GFF1368	0.21	-0.0
1,391,151	-		GFF1368	0.22	-0.5
1,391,167	+		GFF1368	0.23	-0.6
1,391,186	-		GFF1368	0.25	+1.1
1,391,206	+		GFF1368	0.26	-0.3
1,391,214	-		GFF1368	0.27	-0.5
1,391,242	+		GFF1368	0.30	+0.4
1,391,243	-		GFF1368	0.30	-0.8
1,391,243	-		GFF1368	0.30	-0.7
1,391,250	+		GFF1368	0.30	-0.1
1,391,250	-		GFF1368	0.30	+0.5
1,391,269	+		GFF1368	0.32	+0.8
1,391,269	+		GFF1368	0.32	-2.6
1,391,269	+		GFF1368	0.32	-0.1
1,391,269	+		GFF1368	0.32	+0.1
1,391,269	+		GFF1368	0.32	-0.1
1,391,269	+		GFF1368	0.32	-0.0
1,391,277	-		GFF1368	0.32	+0.5
1,391,277	-		GFF1368	0.32	+0.2
1,391,277	-		GFF1368	0.32	-1.1
1,391,286	+		GFF1368	0.33	+0.5
1,391,294	-		GFF1368	0.34	+0.5
1,391,313	+		GFF1368	0.36	-1.6
1,391,314	+		GFF1368	0.36	-0.3
1,391,321	-		GFF1368	0.36	-0.3
1,391,321	-		GFF1368	0.36	-0.7
1,391,322	-		GFF1368	0.36	-0.8
1,391,322	-		GFF1368	0.36	+1.5
1,391,322	-		GFF1368	0.36	-0.3
1,391,338	-		GFF1368	0.38	+0.8
1,391,359	+		GFF1368	0.39	-0.8
1,391,367	-		GFF1368	0.40	-0.5
1,391,368	-		GFF1368	0.40	+0.2
1,391,369	+		GFF1368	0.40	-0.7
1,391,377	-		GFF1368	0.41	-0.3
1,391,384	+		GFF1368	0.42	+0.1
1,391,392	-		GFF1368	0.42	-1.9
1,391,392	-		GFF1368	0.42	-0.9
1,391,429	+		GFF1368	0.45	-0.3
1,391,443	-		GFF1368	0.47	-0.1
1,391,445	-		GFF1368	0.47	-2.3
1,391,456	+		GFF1368	0.48	+0.6
1,391,467	+		GFF1368	0.49	-0.7
1,391,475	-		GFF1368	0.49	-0.2
1,391,475	-		GFF1368	0.49	-0.5
1,391,503	+		GFF1368	0.52	-2.3
1,391,505	-		GFF1368	0.52	+0.8
1,391,517	+		GFF1368	0.53	-2.0
1,391,517	+		GFF1368	0.53	+0.3
1,391,517	+		GFF1368	0.53	-0.6
1,391,525	-		GFF1368	0.53	+0.1
1,391,525	-		GFF1368	0.53	-1.2
1,391,563	+		GFF1368	0.57	+1.4
1,391,571	-		GFF1368	0.57	-0.3
1,391,571	-		GFF1368	0.57	-0.1
1,391,571	-		GFF1368	0.57	-0.5
1,391,571	-		GFF1368	0.57	+0.4
1,391,581	-		GFF1368	0.58	+1.1
1,391,591	+		GFF1368	0.59	+1.6
1,391,596	+		GFF1368	0.59	-0.9
1,391,606	+		GFF1368	0.60	-1.3
1,391,606	+		GFF1368	0.60	-0.4
1,391,606	+		GFF1368	0.60	-0.9
1,391,606	+		GFF1368	0.60	-2.0
1,391,606	+		GFF1368	0.60	-0.8
1,391,606	+		GFF1368	0.60	+0.7
1,391,606	+		GFF1368	0.60	-0.4
1,391,606	+		GFF1368	0.60	-1.3
1,391,607	+		GFF1368	0.60	+1.2
1,391,614	-		GFF1368	0.61	-0.7
1,391,614	-		GFF1368	0.61	+0.1
1,391,614	-		GFF1368	0.61	+0.2
1,391,614	-		GFF1368	0.61	-1.4
1,391,614	-		GFF1368	0.61	-0.6
1,391,614	-		GFF1368	0.61	+0.6
1,391,614	-		GFF1368	0.61	-1.5
1,391,614	-		GFF1368	0.61	-1.3
1,391,614	-		GFF1368	0.61	+0.1
1,391,614	-		GFF1368	0.61	-3.0
1,391,614	-		GFF1368	0.61	-0.5
1,391,614	-		GFF1368	0.61	-0.7
1,391,614	-		GFF1368	0.61	-0.3
1,391,650	+		GFF1368	0.64	+0.9
1,391,680	+		GFF1368	0.67	-0.1
1,391,701	-		GFF1368	0.68	-0.4
1,391,702	-		GFF1368	0.68	-0.8
1,391,719	+		GFF1368	0.70	+1.0
1,391,727	-		GFF1368	0.71	+0.5
1,391,727	-		GFF1368	0.71	-0.5
1,391,727	-		GFF1368	0.71	-2.6
1,391,727	-		GFF1368	0.71	-2.9
1,391,737	+		GFF1368	0.71	-0.6
1,391,737	+		GFF1368	0.71	-0.3
1,391,737	+		GFF1368	0.71	-1.5
1,391,737	+		GFF1368	0.71	-0.1
1,391,737	+		GFF1368	0.71	+0.4
1,391,737	+		GFF1368	0.71	+1.2
1,391,737	+		GFF1368	0.71	-1.9
1,391,737	+		GFF1368	0.71	+0.9
1,391,737	+		GFF1368	0.71	+0.3
1,391,737	+		GFF1368	0.71	-0.5
1,391,737	+		GFF1368	0.71	-0.4
1,391,737	+		GFF1368	0.71	+1.1
1,391,745	-		GFF1368	0.72	+0.4
1,391,745	-		GFF1368	0.72	+0.5
1,391,745	-		GFF1368	0.72	+0.0
1,391,745	-		GFF1368	0.72	-1.4
1,391,762	+		GFF1368	0.74	-0.2
1,391,777	+		GFF1368	0.75	-1.3
1,391,785	-		GFF1368	0.75	-2.1
1,391,820	+		GFF1368	0.78	-0.6
1,391,833	+		GFF1368	0.80	-0.9
1,391,845	+		GFF1368	0.81	-0.1
1,391,847	-		GFF1368	0.81	-0.7
1,391,881	+		GFF1368	0.84	+0.3
1,391,903	+		GFF1368	0.85	-1.2
1,391,910	+		GFF1368	0.86	-1.6
1,391,920	-		GFF1368	0.87	-1.6
1,391,925	+		GFF1368	0.87	+0.9
1,391,925	+		GFF1368	0.87	+0.5
1,391,925	+		GFF1368	0.87	+1.1
1,391,925	+		GFF1368	0.87	-0.3
1,391,925	+		GFF1368	0.87	+0.1
1,391,925	+		GFF1368	0.87	+0.6
1,391,925	+		GFF1368	0.87	-0.2
1,391,925	+		GFF1368	0.87	+0.2
1,391,930	+		GFF1368	0.88	-2.3
1,391,933	-		GFF1368	0.88	-1.5
1,391,933	-		GFF1368	0.88	-0.7
1,391,933	-		GFF1368	0.88	-0.3
1,391,933	-		GFF1368	0.88	+0.4
1,391,933	-		GFF1368	0.88	-0.7
1,391,933	-		GFF1368	0.88	+1.8
1,391,938	-		GFF1368	0.88	+0.1
1,391,943	+		GFF1368	0.89	-1.0
1,391,948	+		GFF1368	0.89	+0.6
1,391,948	+		GFF1368	0.89	+1.2
1,391,956	-				+0.2
1,391,958	+				-2.1
1,391,958	+				+0.9
1,391,963	+				-1.3
1,391,978	+				-1.4
1,391,980	+				-0.4
1,391,982	+				+0.3
1,391,982	+				+0.1
1,391,982	+				+1.2
1,391,983	+				-1.8
1,391,988	-				+0.1
1,391,990	-				-0.4
1,391,993	-				-3.1
1,391,996	+				-1.4
1,391,996	+				+0.1
1,391,996	+				+0.4
1,391,996	+				-0.6
1,392,004	-				-0.9
1,392,005	-				+0.4
1,392,027	+				+0.6
1,392,027	+				-2.1
1,392,027	+				-1.2
1,392,027	+				-0.1
1,392,027	+				-2.4
1,392,027	+				+0.2
1,392,027	+				+0.1
1,392,027	-				-0.8
1,392,027	-				+0.4
1,392,032	+				+0.2
1,392,035	-				+1.2
1,392,035	-				+0.9
1,392,035	-				+0.3
1,392,055	+				-1.9
1,392,055	+				+0.3
1,392,063	-				+1.1
1,392,063	-				-0.3
1,392,063	-				-0.5
1,392,067	-				-0.3
1,392,075	+				+0.7
1,392,075	+				+0.6
1,392,081	-				-1.2
1,392,081	-				-1.6
1,392,081	-				+0.1
1,392,083	-				+1.6
1,392,088	-				+0.1
1,392,088	-				-0.6
1,392,135	-				-0.4
1,392,139	+				+1.8
1,392,147	-				-0.5
1,392,147	-				-0.0
1,392,156	+				+0.1
1,392,156	+				-0.1
1,392,156	-				-1.7
1,392,164	-				-0.6
1,392,189	+				-0.2
1,392,189	+				-1.2
1,392,194	+				+0.8
1,392,194	+				-1.7
1,392,197	-				-0.6
1,392,197	-				-0.6
1,392,259	+		GFF1369	0.12	-2.0
1,392,259	-		GFF1369	0.12	+0.9
1,392,264	+		GFF1369	0.12	-0.8
1,392,264	+		GFF1369	0.12	+1.1
1,392,267	-		GFF1369	0.13	+0.7
1,392,267	-		GFF1369	0.13	+1.2
1,392,272	-		GFF1369	0.13	-1.6
1,392,293	+		GFF1369	0.15	+0.1
1,392,293	-		GFF1369	0.15	-0.9
1,392,307	-		GFF1369	0.16	+0.3
1,392,324	-		GFF1369	0.18	+0.2
1,392,324	-		GFF1369	0.18	-0.1
1,392,341	+		GFF1369	0.19	-0.1
1,392,341	+		GFF1369	0.19	+0.8
1,392,347	+		GFF1369	0.20	-0.2
1,392,349	-		GFF1369	0.20	+0.1
1,392,349	-		GFF1369	0.20	-0.0
1,392,355	-		GFF1369	0.20	-1.9
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