Strain Fitness in Sphingobium sp. HT1-2 around GFF1364

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,386,697	-		GFF1363	0.34	-0.0
1,386,697	-		GFF1363	0.34	-0.8
1,386,697	-		GFF1363	0.34	+0.1
1,386,697	-		GFF1363	0.34	-0.2
1,386,697	-		GFF1363	0.34	+0.8
1,386,697	-		GFF1363	0.34	-0.7
1,386,697	-		GFF1363	0.34	+0.1
1,386,697	-		GFF1363	0.34	-1.2
1,386,697	-		GFF1363	0.34	+0.8
1,386,704	+		GFF1363	0.35	-0.9
1,386,720	-		GFF1363	0.36	+1.2
1,386,728	+		GFF1363	0.36	-0.4
1,386,729	+		GFF1363	0.36	-0.5
1,386,738	+		GFF1363	0.37	+1.5
1,386,746	-		GFF1363	0.38	+0.2
1,386,767	+		GFF1363	0.39	-0.1
1,386,781	+		GFF1363	0.40	-0.6
1,386,786	+		GFF1363	0.40	-0.8
1,386,786	+		GFF1363	0.40	-0.7
1,386,786	+		GFF1363	0.40	-0.2
1,386,789	-		GFF1363	0.40	-0.2
1,386,789	-		GFF1363	0.40	-0.8
1,386,791	+		GFF1363	0.41	-0.3
1,386,791	+		GFF1363	0.41	+0.1
1,386,791	+		GFF1363	0.41	+0.1
1,386,791	+		GFF1363	0.41	+0.2
1,386,791	+		GFF1363	0.41	+0.8
1,386,791	+		GFF1363	0.41	-0.1
1,386,796	+		GFF1363	0.41	-0.4
1,386,796	+		GFF1363	0.41	-0.1
1,386,796	+		GFF1363	0.41	-0.9
1,386,799	-		GFF1363	0.41	-0.8
1,386,799	-		GFF1363	0.41	-0.3
1,386,799	-		GFF1363	0.41	+0.3
1,386,799	-		GFF1363	0.41	-2.0
1,386,799	-		GFF1363	0.41	-0.7
1,386,804	-		GFF1363	0.41	+0.5
1,386,814	+		GFF1363	0.42	+0.5
1,386,832	-		GFF1363	0.43	+1.2
1,386,839	-		GFF1363	0.44	+0.5
1,386,846	+		GFF1363	0.44	-1.1
1,386,856	+		GFF1363	0.45	+0.1
1,386,856	+		GFF1363	0.45	-0.2
1,386,899	-		GFF1363	0.48	+0.3
1,386,918	+		GFF1363	0.49	-0.1
1,386,926	-		GFF1363	0.50	+1.2
1,386,929	-		GFF1363	0.50	+1.4
1,386,946	+		GFF1363	0.51	-0.5
1,386,949	-		GFF1363	0.51	+0.7
1,386,951	+		GFF1363	0.51	+1.8
1,386,964	+		GFF1363	0.52	-0.7
1,386,972	-		GFF1363	0.53	-2.3
1,386,972	-		GFF1363	0.53	+0.1
1,386,972	-		GFF1363	0.53	-0.7
1,386,972	-		GFF1363	0.53	-0.7
1,386,972	-		GFF1363	0.53	-0.1
1,386,972	-		GFF1363	0.53	+0.4
1,387,046	-		GFF1363	0.58	-0.2
1,387,062	+		GFF1363	0.59	+0.5
1,387,062	+		GFF1363	0.59	+0.6
1,387,062	+		GFF1363	0.59	-2.2
1,387,062	+		GFF1363	0.59	-1.5
1,387,062	+		GFF1363	0.59	-0.8
1,387,062	+		GFF1363	0.59	-1.2
1,387,067	+		GFF1363	0.59	+0.8
1,387,067	+		GFF1363	0.59	+0.2
1,387,067	+		GFF1363	0.59	+1.2
1,387,067	+		GFF1363	0.59	-0.0
1,387,070	-		GFF1363	0.59	-0.6
1,387,070	-		GFF1363	0.59	-0.3
1,387,075	-		GFF1363	0.60	-0.7
1,387,075	-		GFF1363	0.60	+1.3
1,387,075	-		GFF1363	0.60	+0.6
1,387,075	-		GFF1363	0.60	-1.3
1,387,075	-		GFF1363	0.60	-1.3
1,387,115	-		GFF1363	0.63	+1.3
1,387,122	+		GFF1363	0.63	-0.3
1,387,122	+		GFF1363	0.63	-0.2
1,387,130	-		GFF1363	0.64	+1.3
1,387,130	-		GFF1363	0.64	-1.0
1,387,130	-		GFF1363	0.64	+0.7
1,387,157	-		GFF1363	0.65	-0.7
1,387,162	+		GFF1363	0.66	-2.0
1,387,199	+		GFF1363	0.68	-1.0
1,387,207	-		GFF1363	0.69	+0.2
1,387,207	-		GFF1363	0.69	-0.7
1,387,207	-		GFF1363	0.69	-0.7
1,387,212	-		GFF1363	0.69	+1.1
1,387,214	-		GFF1363	0.69	-1.9
1,387,223	+		GFF1363	0.70	+0.6
1,387,231	-		GFF1363	0.70	+1.3
1,387,240	+		GFF1363	0.71	-1.1
1,387,242	-		GFF1363	0.71	+0.4
1,387,248	-		GFF1363	0.72	-1.1
1,387,256	-		GFF1363	0.72	-0.4
1,387,265	+		GFF1363	0.73	-0.4
1,387,304	+		GFF1363	0.75	+0.0
1,387,304	+		GFF1363	0.75	+0.9
1,387,312	-		GFF1363	0.76	+2.2
1,387,323	+		GFF1363	0.77	-2.9
1,387,323	+		GFF1363	0.77	-0.5
1,387,331	-		GFF1363	0.77	+0.4
1,387,398	+		GFF1363	0.82	+1.2
1,387,404	+		GFF1363	0.82	-0.2
1,387,412	-		GFF1363	0.83	-1.1
1,387,414	+		GFF1363	0.83	+0.9
1,387,414	+		GFF1363	0.83	+1.2
1,387,415	+		GFF1363	0.83	+0.2
1,387,422	-		GFF1363	0.83	+0.8
1,387,422	-		GFF1363	0.83	+0.5
1,387,426	-		GFF1363	0.84	-0.9
1,387,433	-		GFF1363	0.84	-0.6
1,387,435	+		GFF1363	0.84	-0.1
1,387,440	+		GFF1363	0.85	+0.3
1,387,450	+		GFF1363	0.85	+0.8
1,387,450	+		GFF1363	0.85	+1.6
1,387,469	+		GFF1363	0.87	-0.1
1,387,470	+		GFF1363	0.87	-1.5
1,387,470	+		GFF1363	0.87	+0.7
1,387,470	+		GFF1363	0.87	-3.2
1,387,470	+		GFF1363	0.87	-0.9
1,387,470	+		GFF1363	0.87	-1.5
1,387,470	+		GFF1363	0.87	-1.3
1,387,470	+		GFF1363	0.87	-0.6
1,387,470	+		GFF1363	0.87	-0.4
1,387,470	+		GFF1363	0.87	+0.2
1,387,470	+		GFF1363	0.87	+0.6
1,387,470	+		GFF1363	0.87	-0.8
1,387,477	-		GFF1363	0.87	-0.3
1,387,478	-		GFF1363	0.87	-2.6
1,387,478	-		GFF1363	0.87	-0.5
1,387,478	-		GFF1363	0.87	-0.4
1,387,478	-		GFF1363	0.87	-0.1
1,387,493	+		GFF1363	0.88	-1.6
1,387,501	-		GFF1363	0.89	-0.7
1,387,501	-		GFF1363	0.89	-1.9
1,387,501	-		GFF1363	0.89	-0.0
1,387,501	-		GFF1363	0.89	+0.1
1,387,501	-		GFF1363	0.89	-0.7
1,387,501	-		GFF1363	0.89	-2.0
1,387,502	-		GFF1363	0.89	-2.7
1,387,514	+		GFF1363	0.90	+0.0
1,387,524	+				+0.8
1,387,524	+				-1.0
1,387,542	-				-0.7
1,387,559	+				-0.1
1,387,561	+				-1.8
1,387,564	-				-1.8
1,387,566	+				+0.8
1,387,607	-				-0.4
1,387,612	+				+0.6
1,387,635	+				-1.3
1,387,635	+				+0.8
1,387,638	-				+0.6
1,387,640	+				-0.8
1,387,640	+				+0.8
1,387,640	+				-0.9
1,387,643	-				-0.7
1,387,648	-				+0.5
1,387,648	-				-0.3
1,387,648	-				-2.1
1,387,648	-				+0.5
1,387,648	-				+0.3
1,387,648	-				+0.6
1,387,648	-				-1.5
1,387,656	+				-0.7
1,387,656	+				-0.1
1,387,661	+				-0.4
1,387,663	+				+1.6
1,387,663	+				-2.9
1,387,663	+				-1.0
1,387,666	+				-0.4
1,387,671	-				+1.0
1,387,671	-				-1.8
1,387,679	-				+0.6
1,387,683	+				-0.1
1,387,683	+				+0.3
1,387,696	+				+0.7
1,387,698	+				+0.8
1,387,704	-				+0.6
1,387,714	+				-0.3
1,387,717	-				+0.1
1,387,717	-				-1.1
1,387,722	-				-0.6
1,387,722	-				-1.2
1,387,742	+				+0.4
1,387,742	+				-1.0
1,387,742	+				-0.9
1,387,745	+				-0.9
1,387,761	-				-0.8
1,387,765	-				-2.0
1,387,766	-				-1.1
1,387,769	-				-0.2
1,387,770	+				-1.0
1,387,778	+				-0.8
1,387,821	+				-2.6
1,387,835	-		GFF1364	0.10	-0.5
1,387,851	+		GFF1364	0.11	+0.3
1,387,873	+		GFF1364	0.13	+0.3
1,387,879	-		GFF1364	0.13	-0.6
1,387,882	+		GFF1364	0.14	+1.1
1,387,890	-		GFF1364	0.14	+1.6
1,387,890	-		GFF1364	0.14	-1.1
1,387,890	-		GFF1364	0.14	+0.8
1,387,901	-		GFF1364	0.15	+0.3
1,387,950	-		GFF1364	0.18	-0.3
1,387,981	+		GFF1364	0.21	+0.5
1,387,981	+		GFF1364	0.21	-2.1
1,387,996	+		GFF1364	0.22	-0.7
1,388,001	+		GFF1364	0.22	-1.0
1,388,001	+		GFF1364	0.22	+0.1
1,388,004	-		GFF1364	0.22	+0.1
1,388,004	-		GFF1364	0.22	-1.5
1,388,004	-		GFF1364	0.22	+0.1
1,388,006	+		GFF1364	0.22	-0.0
1,388,009	-		GFF1364	0.23	+1.0
1,388,014	+		GFF1364	0.23	+0.8
1,388,014	+		GFF1364	0.23	-0.3
1,388,027	-		GFF1364	0.24	-0.1
1,388,046	+		GFF1364	0.25	+1.2
1,388,046	+		GFF1364	0.25	-1.0
1,388,053	-		GFF1364	0.26	-2.1
1,388,054	-		GFF1364	0.26	+0.2
1,388,054	-		GFF1364	0.26	-1.7
1,388,074	+		GFF1364	0.27	-0.7
1,388,074	+		GFF1364	0.27	-1.3
1,388,079	+		GFF1364	0.28	+0.1
1,388,081	+		GFF1364	0.28	+0.7
1,388,082	-		GFF1364	0.28	-0.1
1,388,129	-		GFF1364	0.31	+0.4
1,388,134	-		GFF1364	0.32	+0.3
1,388,134	-		GFF1364	0.32	-2.0
1,388,134	-		GFF1364	0.32	-1.1
1,388,134	-		GFF1364	0.32	-1.6
1,388,150	+		GFF1364	0.33	+0.0
1,388,153	+		GFF1364	0.33	-0.3
1,388,153	+		GFF1364	0.33	-0.9
1,388,158	-		GFF1364	0.33	-0.0
1,388,161	-		GFF1364	0.33	-0.6
1,388,166	+		GFF1364	0.34	+0.7
1,388,166	+		GFF1364	0.34	-0.4
1,388,174	-		GFF1364	0.34	-0.8
1,388,212	+		GFF1364	0.37	+0.0
1,388,212	+		GFF1364	0.37	-0.8
1,388,213	+		GFF1364	0.37	-0.9
1,388,213	+		GFF1364	0.37	-0.6
1,388,215	-		GFF1364	0.37	-0.8
1,388,217	+		GFF1364	0.37	+0.7
1,388,220	-		GFF1364	0.38	-0.9
1,388,220	-		GFF1364	0.38	-0.8
1,388,222	+		GFF1364	0.38	-0.7
1,388,223	+		GFF1364	0.38	+0.3
1,388,223	+		GFF1364	0.38	+0.3
1,388,231	-		GFF1364	0.38	-0.2
1,388,276	-		GFF1364	0.42	-0.5
1,388,276	-		GFF1364	0.42	-0.6
1,388,309	-		GFF1364	0.44	-0.3
1,388,309	-		GFF1364	0.44	-0.3
1,388,350	+		GFF1364	0.47	+0.2
1,388,356	+		GFF1364	0.47	-1.0
1,388,363	-		GFF1364	0.48	-0.1
1,388,364	-		GFF1364	0.48	-1.0
1,388,364	-		GFF1364	0.48	-1.3
1,388,379	-		GFF1364	0.49	+0.3
1,388,397	+		GFF1364	0.50	-0.7
1,388,397	-		GFF1364	0.50	-0.3
1,388,397	-		GFF1364	0.50	+0.7
1,388,450	+		GFF1364	0.54	-1.6
1,388,450	+		GFF1364	0.54	-0.4
1,388,454	+		GFF1364	0.54	+0.2
1,388,456	-		GFF1364	0.54	-0.5
1,388,462	-		GFF1364	0.55	-1.6
1,388,462	-		GFF1364	0.55	-0.6
1,388,498	-		GFF1364	0.57	-1.8
1,388,498	-		GFF1364	0.57	+0.6
1,388,501	+		GFF1364	0.58	+0.2
1,388,506	-		GFF1364	0.58	-0.6
1,388,511	+		GFF1364	0.58	-0.9
1,388,516	+		GFF1364	0.59	-1.3
1,388,519	-		GFF1364	0.59	-0.1
1,388,519	-		GFF1364	0.59	-0.8
1,388,520	-		GFF1364	0.59	-1.7
1,388,564	-		GFF1364	0.62	-0.7
1,388,566	+		GFF1364	0.62	-1.1
1,388,569	-		GFF1364	0.62	-1.1
1,388,571	+		GFF1364	0.63	+0.5
1,388,591	+		GFF1364	0.64	+0.5
1,388,591	+		GFF1364	0.64	+0.0
1,388,591	+		GFF1364	0.64	-0.4
1,388,596	+		GFF1364	0.64	-3.1
1,388,596	+		GFF1364	0.64	-0.8
1,388,599	-		GFF1364	0.65	-0.4
1,388,599	-		GFF1364	0.65	+0.4
1,388,599	-		GFF1364	0.65	-0.4
1,388,599	-		GFF1364	0.65	-1.1
1,388,601	+		GFF1364	0.65	+0.0
1,388,601	+		GFF1364	0.65	-0.6
1,388,604	-		GFF1364	0.65	+1.0
1,388,604	-		GFF1364	0.65	-0.9
1,388,604	-		GFF1364	0.65	-0.7
1,388,606	+		GFF1364	0.65	+1.4
1,388,609	-		GFF1364	0.65	-0.2
1,388,609	-		GFF1364	0.65	-0.1
1,388,609	-		GFF1364	0.65	-0.1
1,388,609	-		GFF1364	0.65	-1.0
1,388,614	-		GFF1364	0.66	+0.1
1,388,657	-		GFF1364	0.69	+1.2
1,388,681	+		GFF1364	0.70	+0.5
1,388,722	+		GFF1364	0.73	+0.2
1,388,740	-		GFF1364	0.75	-0.3
1,388,778	+		GFF1364	0.77	+0.7
1,388,797	-		GFF1364	0.79	+0.2
1,388,825	+		GFF1364	0.81	-1.4
1,388,839	-		GFF1364	0.82	+0.4
1,388,878	+		GFF1364	0.84	-0.8
1,388,898	-		GFF1364	0.86	+0.6
1,388,906	+		GFF1364	0.86	-2.4
1,388,906	+		GFF1364	0.86	+0.7
1,388,914	-		GFF1364	0.87	-0.3
1,388,951	-		GFF1364	0.90	-1.8
1,388,951	-		GFF1364	0.90	-0.8
1,388,975	+				+1.9
1,388,975	+				+0.2
1,388,983	-				-1.0
1,388,983	-				-0.5
1,388,983	-				-0.2
1,388,983	-				-0.2
1,388,983	-				+0.6
1,388,983	-				-2.1
1,388,983	-				+0.8
1,388,983	-				-1.5
1,388,983	-				-0.1
1,388,985	-				+0.4
1,388,987	-				-0.3
1,389,020	+				-0.6
1,389,030	-				-1.4
1,389,035	-				+0.3
1,389,045	+				-0.3
1,389,045	+				-1.0
1,389,047	+				-0.8
1,389,068	-				-1.5
1,389,071	+				-0.1
1,389,089	-				+0.6
1,389,138	+		GFF1365	0.23	-0.7
1,389,148	+		GFF1365	0.29	-0.5
1,389,152	-		GFF1365	0.31	-0.4
1,389,159	-		GFF1365	0.34	-2.5
1,389,161	+		GFF1365	0.35	-1.7
1,389,161	-		GFF1365	0.35	-0.0
1,389,161	-		GFF1365	0.35	-1.7
1,389,189	+		GFF1365	0.50	+0.8
1,389,189	+		GFF1365	0.50	+0.3
1,389,189	+		GFF1365	0.50	-0.9
1,389,190	+		GFF1365	0.51	+1.1
1,389,190	+		GFF1365	0.51	-0.7
1,389,190	+		GFF1365	0.51	+0.4
1,389,190	+		GFF1365	0.51	-1.6
1,389,198	-		GFF1365	0.55	-1.3
1,389,198	-		GFF1365	0.55	-0.1
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