Strain Fitness in Sphingobium sp. HT1-2 around GFF1256

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,283,702	+		GFF1255	0.26	+0.1
1,283,705	+		GFF1255	0.26	-0.4
1,283,723	+		GFF1255	0.28	-0.4
1,283,723	+		GFF1255	0.28	-0.6
1,283,730	+		GFF1255	0.28	-0.8
1,283,738	+		GFF1255	0.29	-0.2
1,283,738	-		GFF1255	0.29	-0.2
1,283,793	+		GFF1255	0.33	-0.1
1,283,798	+		GFF1255	0.33	-0.5
1,283,798	+		GFF1255	0.33	-0.9
1,283,801	-		GFF1255	0.34	-1.5
1,283,801	-		GFF1255	0.34	-1.0
1,283,801	-		GFF1255	0.34	-1.4
1,283,801	-		GFF1255	0.34	-1.0
1,283,806	+		GFF1255	0.34	+1.1
1,283,806	-		GFF1255	0.34	-0.2
1,283,814	-		GFF1255	0.35	+0.8
1,283,823	-		GFF1255	0.35	-2.1
1,283,823	-		GFF1255	0.35	-0.9
1,283,824	-		GFF1255	0.35	-0.9
1,283,851	-		GFF1255	0.37	+1.3
1,283,853	-		GFF1255	0.37	-1.8
1,283,880	-		GFF1255	0.39	-1.3
1,283,899	-		GFF1255	0.41	+0.1
1,283,899	-		GFF1255	0.41	+0.8
1,283,899	-		GFF1255	0.41	+1.1
1,283,940	-		GFF1255	0.44	-0.9
1,283,979	+		GFF1255	0.47	+0.7
1,283,984	+		GFF1255	0.47	+0.4
1,283,989	+		GFF1255	0.47	+0.8
1,283,992	+		GFF1255	0.48	+0.1
1,283,992	-		GFF1255	0.48	-0.6
1,283,997	-		GFF1255	0.48	-0.3
1,284,000	-		GFF1255	0.48	-0.6
1,284,002	+		GFF1255	0.48	-1.8
1,284,002	+		GFF1255	0.48	-1.2
1,284,008	+		GFF1255	0.49	+0.5
1,284,009	+		GFF1255	0.49	-0.7
1,284,011	-		GFF1255	0.49	+0.2
1,284,012	-		GFF1255	0.49	+1.4
1,284,016	-		GFF1255	0.49	+0.6
1,284,035	+		GFF1255	0.51	-1.2
1,284,041	+		GFF1255	0.51	-0.5
1,284,043	-		GFF1255	0.51	+0.2
1,284,049	-		GFF1255	0.52	+0.4
1,284,057	+		GFF1255	0.52	+0.4
1,284,065	+		GFF1255	0.53	-1.5
1,284,112	-		GFF1255	0.56	-0.3
1,284,120	+		GFF1255	0.57	-0.2
1,284,126	+		GFF1255	0.58	-1.1
1,284,135	-		GFF1255	0.58	-0.1
1,284,135	-		GFF1255	0.58	-0.1
1,284,145	+		GFF1255	0.59	+0.8
1,284,150	+		GFF1255	0.59	-0.9
1,284,150	+		GFF1255	0.59	-1.9
1,284,158	+		GFF1255	0.60	+1.4
1,284,158	-		GFF1255	0.60	-0.2
1,284,158	-		GFF1255	0.60	-1.9
1,284,158	-		GFF1255	0.60	+0.8
1,284,158	-		GFF1255	0.60	+0.5
1,284,159	+		GFF1255	0.60	-1.0
1,284,166	-		GFF1255	0.60	+0.4
1,284,198	+		GFF1255	0.63	-0.5
1,284,209	+		GFF1255	0.64	-0.5
1,284,228	+		GFF1255	0.65	+0.5
1,284,236	-		GFF1255	0.66	-0.5
1,284,236	-		GFF1255	0.66	+1.7
1,284,250	-		GFF1255	0.67	+0.5
1,284,262	+		GFF1255	0.68	-2.3
1,284,292	-		GFF1255	0.70	-1.5
1,284,314	-		GFF1255	0.71	-1.1
1,284,321	-		GFF1255	0.72	+1.8
1,284,329	-		GFF1255	0.72	-0.3
1,284,336	+		GFF1255	0.73	+0.4
1,284,336	+		GFF1255	0.73	-0.5
1,284,336	+		GFF1255	0.73	+0.1
1,284,345	-		GFF1255	0.74	-1.2
1,284,355	-		GFF1255	0.74	-0.5
1,284,381	+		GFF1255	0.76	+0.4
1,284,387	+		GFF1255	0.77	-2.5
1,284,397	+		GFF1255	0.78	-1.9
1,284,397	+		GFF1255	0.78	+1.3
1,284,399	-		GFF1255	0.78	-0.3
1,284,423	-		GFF1255	0.79	-0.5
1,284,446	+		GFF1255	0.81	-0.2
1,284,446	+		GFF1255	0.81	+0.4
1,284,446	+		GFF1255	0.81	+0.6
1,284,446	+		GFF1255	0.81	-2.6
1,284,446	+		GFF1255	0.81	-1.9
1,284,451	+		GFF1255	0.81	-0.2
1,284,451	+		GFF1255	0.81	-0.8
1,284,454	-		GFF1255	0.82	+0.3
1,284,454	-		GFF1255	0.82	+0.8
1,284,454	-		GFF1255	0.82	-1.1
1,284,459	-		GFF1255	0.82	-1.3
1,284,459	-		GFF1255	0.82	-1.8
1,284,497	+		GFF1255	0.85	-2.3
1,284,497	+		GFF1255	0.85	+0.3
1,284,504	+		GFF1255	0.85	-0.3
1,284,504	+		GFF1255	0.85	-0.1
1,284,504	-		GFF1255	0.85	+1.3
1,284,509	+		GFF1255	0.86	-0.2
1,284,509	+		GFF1255	0.86	-0.6
1,284,509	+		GFF1255	0.86	-1.3
1,284,517	-		GFF1255	0.86	+0.5
1,284,517	-		GFF1255	0.86	-0.4
1,284,517	-		GFF1255	0.86	-2.5
1,284,517	-		GFF1255	0.86	+0.2
1,284,521	+		GFF1255	0.87	-0.5
1,284,532	+		GFF1255	0.87	+0.9
1,284,532	+		GFF1255	0.87	+0.4
1,284,532	+		GFF1255	0.87	+0.1
1,284,532	+		GFF1255	0.87	-0.1
1,284,532	+		GFF1255	0.87	+1.5
1,284,532	+		GFF1255	0.87	-0.5
1,284,532	+		GFF1255	0.87	-0.1
1,284,532	+		GFF1255	0.87	-2.0
1,284,532	+		GFF1255	0.87	-2.3
1,284,534	-		GFF1255	0.88	+1.0
1,284,537	+		GFF1255	0.88	+0.7
1,284,540	-		GFF1255	0.88	-0.2
1,284,540	-		GFF1255	0.88	-1.8
1,284,540	-		GFF1255	0.88	-0.9
1,284,540	-		GFF1255	0.88	-0.2
1,284,540	-		GFF1255	0.88	-0.5
1,284,540	-		GFF1255	0.88	-0.9
1,284,540	-		GFF1255	0.88	-0.2
1,284,540	-		GFF1255	0.88	-1.9
1,284,540	-		GFF1255	0.88	+1.5
1,284,540	-		GFF1255	0.88	-0.3
1,284,540	-		GFF1255	0.88	-0.5
1,284,540	-		GFF1255	0.88	-0.2
1,284,540	-		GFF1255	0.88	-1.6
1,284,540	-		GFF1255	0.88	+0.4
1,284,545	-		GFF1255	0.88	+0.4
1,284,606	+				+0.9
1,284,606	+				+1.1
1,284,606	+				-0.1
1,284,614	-				-0.6
1,284,614	-				+0.1
1,284,633	-				-0.4
1,284,633	-				+0.9
1,284,633	-				+1.6
1,284,634	-				-0.7
1,284,677	+				+0.9
1,284,700	-				+0.9
1,284,701	+				+0.2
1,284,722	+				+0.1
1,284,726	+				-0.4
1,284,756	+				-1.2
1,284,756	+				-0.1
1,284,756	+				-0.7
1,284,758	+				-0.1
1,284,764	-				+0.4
1,284,764	-				+0.5
1,284,785	-				+0.8
1,284,848	+		GFF1256	0.17	+0.3
1,284,849	-		GFF1256	0.17	+1.1
1,284,849	-		GFF1256	0.17	-0.6
1,284,853	+		GFF1256	0.17	-0.8
1,284,869	-		GFF1256	0.19	+0.9
1,284,871	+		GFF1256	0.19	-0.2
1,284,881	-		GFF1256	0.20	-0.5
1,284,891	-		GFF1256	0.21	-1.1
1,284,894	+		GFF1256	0.22	-1.8
1,284,894	+		GFF1256	0.22	-0.0
1,284,894	+		GFF1256	0.22	-1.1
1,284,894	+		GFF1256	0.22	-1.6
1,284,894	+		GFF1256	0.22	+0.3
1,284,894	+		GFF1256	0.22	-0.2
1,284,894	+		GFF1256	0.22	-0.3
1,284,894	+		GFF1256	0.22	-0.2
1,284,894	+		GFF1256	0.22	-2.5
1,284,894	+		GFF1256	0.22	-0.4
1,284,894	+		GFF1256	0.22	-0.9
1,284,894	+		GFF1256	0.22	+0.2
1,284,894	+		GFF1256	0.22	+0.5
1,284,894	+		GFF1256	0.22	-0.0
1,284,894	+		GFF1256	0.22	+0.6
1,284,894	+		GFF1256	0.22	+0.4
1,284,894	+		GFF1256	0.22	+1.0
1,284,894	+		GFF1256	0.22	+0.3
1,284,902	-		GFF1256	0.23	-0.5
1,284,902	-		GFF1256	0.23	+0.9
1,284,902	-		GFF1256	0.23	-0.3
1,284,902	-		GFF1256	0.23	+0.7
1,284,902	-		GFF1256	0.23	+0.9
1,284,902	-		GFF1256	0.23	+1.6
1,284,902	-		GFF1256	0.23	-2.9
1,284,902	-		GFF1256	0.23	+1.2
1,284,902	-		GFF1256	0.23	-2.5
1,284,902	-		GFF1256	0.23	-0.1
1,284,902	-		GFF1256	0.23	+0.7
1,284,902	-		GFF1256	0.23	+0.5
1,284,902	-		GFF1256	0.23	+0.1
1,284,902	-		GFF1256	0.23	-0.7
1,284,902	-		GFF1256	0.23	-1.2
1,284,902	-		GFF1256	0.23	-1.4
1,284,902	-		GFF1256	0.23	-0.4
1,284,902	-		GFF1256	0.23	+0.6
1,284,902	-		GFF1256	0.23	-0.1
1,284,902	-		GFF1256	0.23	-1.5
1,284,902	-		GFF1256	0.23	+0.1
1,284,902	-		GFF1256	0.23	-0.7
1,284,907	-		GFF1256	0.23	-0.3
1,284,912	-		GFF1256	0.24	+0.8
1,284,912	-		GFF1256	0.24	-1.7
1,284,912	-		GFF1256	0.24	-0.1
1,284,926	-		GFF1256	0.25	-0.6
1,284,932	-		GFF1256	0.26	-0.2
1,284,936	-		GFF1256	0.26	+0.6
1,284,938	+		GFF1256	0.26	-0.6
1,284,994	+		GFF1256	0.33	+0.8
1,285,002	-		GFF1256	0.34	-0.4
1,285,002	-		GFF1256	0.34	+1.1
1,285,009	-		GFF1256	0.34	-0.4
1,285,010	-		GFF1256	0.34	+0.4
1,285,013	+		GFF1256	0.35	+0.8
1,285,026	-		GFF1256	0.36	-0.4
1,285,033	+		GFF1256	0.37	+0.4
1,285,033	+		GFF1256	0.37	-1.8
1,285,033	+		GFF1256	0.37	-0.1
1,285,033	+		GFF1256	0.37	+0.9
1,285,033	+		GFF1256	0.37	+1.4
1,285,033	+		GFF1256	0.37	-0.1
1,285,033	+		GFF1256	0.37	-0.8
1,285,034	+		GFF1256	0.37	+1.1
1,285,034	+		GFF1256	0.37	-0.8
1,285,041	-		GFF1256	0.38	+1.0
1,285,041	-		GFF1256	0.38	-0.1
1,285,041	-		GFF1256	0.38	+0.3
1,285,062	-		GFF1256	0.40	-0.4
1,285,072	+		GFF1256	0.41	+0.4
1,285,080	-		GFF1256	0.42	-0.6
1,285,080	-		GFF1256	0.42	+0.4
1,285,080	-		GFF1256	0.42	-0.9
1,285,083	+		GFF1256	0.42	-0.8
1,285,083	+		GFF1256	0.42	+0.2
1,285,083	+		GFF1256	0.42	-0.2
1,285,083	+		GFF1256	0.42	-0.7
1,285,083	+		GFF1256	0.42	-0.3
1,285,083	+		GFF1256	0.42	-1.3
1,285,088	+		GFF1256	0.43	+0.4
1,285,088	+		GFF1256	0.43	-0.8
1,285,088	+		GFF1256	0.43	+0.2
1,285,088	+		GFF1256	0.43	+0.7
1,285,088	+		GFF1256	0.43	-1.1
1,285,088	+		GFF1256	0.43	-0.1
1,285,088	+		GFF1256	0.43	-0.7
1,285,088	+		GFF1256	0.43	-1.1
1,285,088	+		GFF1256	0.43	-1.0
1,285,088	+		GFF1256	0.43	-2.3
1,285,088	+		GFF1256	0.43	-2.7
1,285,088	+		GFF1256	0.43	+0.1
1,285,088	+		GFF1256	0.43	+2.0
1,285,088	+		GFF1256	0.43	+0.1
1,285,088	+		GFF1256	0.43	+0.2
1,285,088	+		GFF1256	0.43	+0.6
1,285,091	-		GFF1256	0.43	-0.6
1,285,091	-		GFF1256	0.43	-0.8
1,285,091	-		GFF1256	0.43	-0.1
1,285,096	-		GFF1256	0.44	-0.0
1,285,096	-		GFF1256	0.44	-0.4
1,285,096	-		GFF1256	0.44	-0.1
1,285,096	-		GFF1256	0.44	+0.4
1,285,096	-		GFF1256	0.44	-0.5
1,285,096	-		GFF1256	0.44	-1.4
1,285,096	-		GFF1256	0.44	-1.0
1,285,106	-		GFF1256	0.45	-2.4
1,285,158	+		GFF1256	0.51	+0.4
1,285,213	+		GFF1256	0.57	+1.2
1,285,213	+		GFF1256	0.57	+0.5
1,285,221	-		GFF1256	0.58	-0.8
1,285,234	-		GFF1256	0.59	-0.1
1,285,236	-		GFF1256	0.59	-2.6
1,285,276	-		GFF1256	0.64	+0.6
1,285,281	-		GFF1256	0.64	-0.1
1,285,286	+		GFF1256	0.65	-0.9
1,285,286	-		GFF1256	0.65	-2.4
1,285,294	-		GFF1256	0.66	-0.6
1,285,318	+		GFF1256	0.68	+0.5
1,285,343	+		GFF1256	0.71	-1.5
1,285,343	+		GFF1256	0.71	-0.5
1,285,351	-		GFF1256	0.72	-0.8
1,285,356	+		GFF1256	0.73	+0.3
1,285,377	-		GFF1256	0.75	-0.7
1,285,392	-		GFF1256	0.77	-0.4
1,285,409	-		GFF1256	0.78	+0.3
1,285,427	+		GFF1256	0.80	-0.2
1,285,427	+		GFF1256	0.80	+0.1
1,285,427	+		GFF1256	0.80	-0.6
1,285,429	+		GFF1256	0.81	+1.0
1,285,429	+		GFF1256	0.81	+1.1
1,285,429	+		GFF1256	0.81	-2.4
1,285,429	+		GFF1256	0.81	-0.6
1,285,429	+		GFF1256	0.81	-0.9
1,285,429	+		GFF1256	0.81	+0.5
1,285,429	+		GFF1256	0.81	+0.5
1,285,429	+		GFF1256	0.81	-0.1
1,285,437	-		GFF1256	0.82	-0.2
1,285,437	-		GFF1256	0.82	-1.8
1,285,437	-		GFF1256	0.82	+0.3
1,285,437	-		GFF1256	0.82	-0.1
1,285,437	-		GFF1256	0.82	+0.7
1,285,447	-		GFF1256	0.83	+0.1
1,285,455	+		GFF1256	0.84	+0.9
1,285,465	+		GFF1256	0.85	-0.2
1,285,478	-		GFF1256	0.86	-0.1
1,285,478	-		GFF1256	0.86	-2.7
1,285,486	+		GFF1256	0.87	+1.1
1,285,502	+		GFF1256	0.89	-0.3
1,285,533	+				+0.4
1,285,535	+				-0.5
1,285,568	+				-0.8
1,285,574	-				+0.2
1,285,578	+				+0.8
1,285,578	+				-1.5
1,285,586	-				-0.1
1,285,586	-				-0.6
1,285,596	-				-0.1
1,285,602	-				+1.3
1,285,604	+				-0.4
1,285,604	+				+0.9
1,285,604	+				-1.4
1,285,604	+				-1.1
1,285,609	+				-1.7
1,285,609	+				-1.7
1,285,612	-				-0.0
1,285,612	-				+0.2
1,285,612	-				-0.3
1,285,612	-				-2.4
1,285,612	-				+0.5
1,285,614	+				+0.6
1,285,623	-				-0.7
1,285,642	+				+1.2
1,285,647	+				-0.5
1,285,647	+				-2.8
1,285,647	+				+0.9
1,285,647	+				-0.3
1,285,647	+				+0.4
1,285,647	+				-1.6
1,285,647	-				-0.3
1,285,652	+				-1.8
1,285,652	+				+1.2
1,285,654	+				+1.3
1,285,654	+				-1.4
1,285,654	+				+1.2
1,285,655	-				-0.9
1,285,655	-				+0.1
1,285,655	-				-1.6
1,285,655	-				-1.0
1,285,655	-				+0.9
1,285,655	-				+0.6
1,285,655	-				-0.8
1,285,655	-				+0.1
1,285,655	-				-0.8
1,285,655	-				+0.8
1,285,660	-				-1.4
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1,286,010	+		GFF1257	0.51	-1.7
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1,286,153	-		GFF1257	0.69	-1.8
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1,286,335	+				+0.9
1,286,335	+				+1.5
1,286,335	-				-0.2
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1,286,417	+				+0.3
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1,286,417	+				-1.1
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1,286,425	-				-1.4
1,286,429	+				-0.8
1,286,429	+				-0.0
1,286,432	-				+0.4
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