Strain Fitness in Sphingobium sp. HT1-2 around GFF1240

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,266,655	-		GFF1238	0.80	-1.3
1,266,662	-		GFF1238	0.81	-3.1
1,266,663	+		GFF1238	0.81	-0.1
1,266,668	-		GFF1238	0.81	+0.4
1,266,680	+		GFF1238	0.83	-1.5
1,266,685	+		GFF1238	0.84	+0.5
1,266,685	+		GFF1238	0.84	-1.0
1,266,686	-		GFF1238	0.84	-1.2
1,266,688	-		GFF1238	0.84	-0.8
1,266,693	-		GFF1238	0.85	-0.0
1,266,693	-		GFF1238	0.85	+0.7
1,266,694	-		GFF1238	0.85	+0.1
1,266,727	-		GFF1238	0.89	-0.9
1,266,732	+		GFF1238	0.90	-2.2
1,266,740	-				+0.9
1,266,758	-				-1.0
1,266,758	-				-0.8
1,266,758	-				-0.4
1,266,768	+				+0.6
1,266,776	-				-0.8
1,266,809	+				+1.8
1,266,809	+				+0.8
1,266,809	+				-1.8
1,266,814	+				-0.4
1,266,829	+				-0.2
1,266,829	+				-0.8
1,266,837	-				-1.7
1,266,837	-				-1.4
1,266,837	-				-0.0
1,266,844	+				-1.1
1,266,855	+				+0.2
1,266,855	+				-0.8
1,266,855	+				-2.3
1,266,855	+				-0.2
1,266,856	+				+0.3
1,266,858	-				-1.1
1,266,858	-				-0.4
1,266,863	-				-1.1
1,266,868	+				-1.2
1,266,868	+				+0.2
1,266,869	-				-0.6
1,266,876	-				+0.6
1,266,880	+				-0.2
1,266,901	-		GFF1239	0.12	+0.4
1,266,912	+		GFF1239	0.14	-2.0
1,266,913	-		GFF1239	0.14	+0.2
1,266,920	-		GFF1239	0.15	-0.5
1,266,927	+		GFF1239	0.16	+0.6
1,266,927	+		GFF1239	0.16	+0.1
1,266,935	-		GFF1239	0.17	+0.7
1,266,935	-		GFF1239	0.17	+0.8
1,266,935	-		GFF1239	0.17	-0.0
1,267,028	+		GFF1239	0.29	-0.2
1,267,028	+		GFF1239	0.29	-0.9
1,267,028	+		GFF1239	0.29	-1.9
1,267,028	+		GFF1239	0.29	-0.2
1,267,028	+		GFF1239	0.29	-1.1
1,267,028	+		GFF1239	0.29	+1.3
1,267,028	+		GFF1239	0.29	-0.5
1,267,028	+		GFF1239	0.29	+0.9
1,267,028	+		GFF1239	0.29	-1.0
1,267,028	+		GFF1239	0.29	-0.8
1,267,028	+		GFF1239	0.29	-0.0
1,267,028	+		GFF1239	0.29	+1.3
1,267,028	+		GFF1239	0.29	-1.4
1,267,028	+		GFF1239	0.29	+0.4
1,267,028	+		GFF1239	0.29	+0.0
1,267,028	+		GFF1239	0.29	+0.0
1,267,028	+		GFF1239	0.29	+0.5
1,267,028	+		GFF1239	0.29	-1.0
1,267,028	+		GFF1239	0.29	-1.1
1,267,028	+		GFF1239	0.29	-0.5
1,267,028	+		GFF1239	0.29	+1.5
1,267,028	+		GFF1239	0.29	-0.4
1,267,028	+		GFF1239	0.29	-0.5
1,267,028	+		GFF1239	0.29	-1.6
1,267,036	-		GFF1239	0.30	-0.9
1,267,036	-		GFF1239	0.30	-0.0
1,267,036	-		GFF1239	0.30	-0.4
1,267,036	-		GFF1239	0.30	-1.4
1,267,036	-		GFF1239	0.30	-0.8
1,267,036	-		GFF1239	0.30	-0.7
1,267,036	-		GFF1239	0.30	+0.9
1,267,036	-		GFF1239	0.30	-0.5
1,267,036	-		GFF1239	0.30	-0.5
1,267,036	-		GFF1239	0.30	+0.8
1,267,036	-		GFF1239	0.30	-0.7
1,267,036	-		GFF1239	0.30	-2.0
1,267,036	-		GFF1239	0.30	-0.8
1,267,036	-		GFF1239	0.30	-0.5
1,267,036	-		GFF1239	0.30	-0.7
1,267,036	-		GFF1239	0.30	-2.0
1,267,036	-		GFF1239	0.30	+0.2
1,267,036	-		GFF1239	0.30	+0.1
1,267,036	-		GFF1239	0.30	+0.4
1,267,036	-		GFF1239	0.30	+0.9
1,267,036	-		GFF1239	0.30	+0.6
1,267,036	-		GFF1239	0.30	+1.4
1,267,036	-		GFF1239	0.30	-1.9
1,267,036	-		GFF1239	0.30	-0.2
1,267,036	-		GFF1239	0.30	-0.6
1,267,038	+		GFF1239	0.30	-0.8
1,267,039	+		GFF1239	0.30	-3.1
1,267,046	-		GFF1239	0.31	-0.5
1,267,046	-		GFF1239	0.31	-0.3
1,267,046	-		GFF1239	0.31	+0.0
1,267,047	-		GFF1239	0.31	-2.0
1,267,047	-		GFF1239	0.31	-0.2
1,267,093	+		GFF1239	0.37	-1.3
1,267,098	+		GFF1239	0.38	-0.0
1,267,098	+		GFF1239	0.38	-0.1
1,267,106	-		GFF1239	0.39	+0.0
1,267,116	-		GFF1239	0.40	-0.5
1,267,119	+		GFF1239	0.41	-0.2
1,267,119	+		GFF1239	0.41	-0.7
1,267,123	+		GFF1239	0.41	+0.1
1,267,127	-		GFF1239	0.42	+1.8
1,267,127	-		GFF1239	0.42	-2.5
1,267,137	+		GFF1239	0.43	+0.7
1,267,141	+		GFF1239	0.43	-0.7
1,267,149	-		GFF1239	0.44	-0.4
1,267,162	-		GFF1239	0.46	-0.7
1,267,269	+		GFF1239	0.60	-0.2
1,267,277	-		GFF1239	0.61	+2.3
1,267,277	-		GFF1239	0.61	+0.7
1,267,277	-		GFF1239	0.61	+0.4
1,267,277	-		GFF1239	0.61	+0.6
1,267,278	-		GFF1239	0.61	+0.6
1,267,305	+		GFF1239	0.65	-0.4
1,267,305	+		GFF1239	0.65	-1.1
1,267,305	+		GFF1239	0.65	-1.3
1,267,305	+		GFF1239	0.65	-0.2
1,267,313	-		GFF1239	0.66	-1.3
1,267,313	-		GFF1239	0.66	+0.9
1,267,313	-		GFF1239	0.66	+0.2
1,267,313	-		GFF1239	0.66	-0.5
1,267,313	-		GFF1239	0.66	-0.1
1,267,313	-		GFF1239	0.66	+0.2
1,267,313	-		GFF1239	0.66	+0.4
1,267,318	+		GFF1239	0.66	+0.7
1,267,339	+		GFF1239	0.69	-1.3
1,267,347	-		GFF1239	0.70	-0.5
1,267,347	-		GFF1239	0.70	-0.1
1,267,352	-		GFF1239	0.71	-0.8
1,267,353	+		GFF1239	0.71	-0.5
1,267,353	+		GFF1239	0.71	-0.3
1,267,353	+		GFF1239	0.71	-0.5
1,267,353	+		GFF1239	0.71	-1.5
1,267,358	+		GFF1239	0.71	+0.8
1,267,358	+		GFF1239	0.71	-0.9
1,267,361	-		GFF1239	0.72	+0.0
1,267,361	-		GFF1239	0.72	-0.1
1,267,361	-		GFF1239	0.72	-1.4
1,267,361	-		GFF1239	0.72	-0.3
1,267,361	-		GFF1239	0.72	-0.6
1,267,361	-		GFF1239	0.72	+0.0
1,267,366	-		GFF1239	0.72	-0.5
1,267,372	-		GFF1239	0.73	-0.9
1,267,378	+		GFF1239	0.74	-0.9
1,267,388	+		GFF1239	0.75	-0.4
1,267,391	-		GFF1239	0.76	+0.1
1,267,391	-		GFF1239	0.76	-2.1
1,267,413	-		GFF1239	0.79	-0.8
1,267,434	+		GFF1239	0.81	+1.5
1,267,444	+		GFF1239	0.83	-0.5
1,267,444	+		GFF1239	0.83	-1.6
1,267,444	+		GFF1239	0.83	+0.4
1,267,447	-		GFF1239	0.83	-1.3
1,267,447	-		GFF1239	0.83	-0.5
1,267,447	-		GFF1239	0.83	-0.8
1,267,452	-		GFF1239	0.84	-0.3
1,267,452	-		GFF1239	0.84	+0.1
1,267,471	+		GFF1239	0.86	-1.1
1,267,487	+		GFF1239	0.88	+0.0
1,267,487	+		GFF1239	0.88	-0.6
1,267,495	+		GFF1239	0.89	-0.3
1,267,495	+		GFF1239	0.89	-0.3
1,267,495	-		GFF1239	0.89	-0.2
1,267,495	-		GFF1239	0.89	+1.7
1,267,498	+		GFF1239	0.90	+0.5
1,267,498	+		GFF1239	0.90	-1.3
1,267,503	-				-1.5
1,267,514	+				-1.0
1,267,514	+				+1.2
1,267,567	+				-1.2
1,267,572	+				-0.9
1,267,579	+				+0.4
1,267,580	-				+0.2
1,267,611	+				-0.5
1,267,642	+				-0.0
1,267,643	-				-1.3
1,267,655	-				-0.3
1,267,659	+				-0.5
1,267,659	+				-1.8
1,267,659	+				+0.6
1,267,659	+				-1.5
1,267,659	+				-2.1
1,267,659	+				-0.7
1,267,659	+				-1.2
1,267,659	+				+0.9
1,267,659	+				+0.5
1,267,667	-				-0.5
1,267,667	-				-0.2
1,267,667	-				+1.2
1,267,667	-				-0.7
1,267,667	-				-0.4
1,267,667	-				-0.1
1,267,667	-				+0.0
1,267,667	-				-1.4
1,267,683	+		GFF1240	0.10	-0.1
1,267,683	+		GFF1240	0.10	-1.3
1,267,688	+		GFF1240	0.11	-0.3
1,267,691	-		GFF1240	0.11	-1.0
1,267,691	-		GFF1240	0.11	+0.5
1,267,696	-		GFF1240	0.12	-0.5
1,267,696	-		GFF1240	0.12	+0.0
1,267,702	+		GFF1240	0.12	-0.4
1,267,715	-		GFF1240	0.14	-1.3
1,267,719	+		GFF1240	0.15	-1.0
1,267,726	-		GFF1240	0.15	+0.1
1,267,726	-		GFF1240	0.15	-0.5
1,267,743	-		GFF1240	0.17	-1.9
1,267,743	-		GFF1240	0.17	-2.0
1,267,784	+		GFF1240	0.22	+0.1
1,267,792	-		GFF1240	0.23	+0.2
1,267,792	-		GFF1240	0.23	+0.9
1,267,792	-		GFF1240	0.23	+1.0
1,267,792	-		GFF1240	0.23	+1.0
1,267,794	+		GFF1240	0.23	+1.0
1,267,814	-		GFF1240	0.26	+0.4
1,267,817	+		GFF1240	0.26	-0.8
1,267,840	+		GFF1240	0.29	+0.1
1,267,848	-		GFF1240	0.30	+1.1
1,267,850	+		GFF1240	0.30	-1.1
1,267,858	-		GFF1240	0.31	-0.4
1,267,865	-		GFF1240	0.32	+0.4
1,267,870	-		GFF1240	0.33	-0.5
1,267,883	-		GFF1240	0.34	+0.6
1,267,883	-		GFF1240	0.34	+0.3
1,267,897	-		GFF1240	0.36	-0.7
1,267,905	-		GFF1240	0.37	-1.9
1,267,920	+		GFF1240	0.38	+0.8
1,267,924	-		GFF1240	0.39	-0.9
1,267,960	+		GFF1240	0.43	-2.1
1,267,965	+		GFF1240	0.44	-0.4
1,267,968	-		GFF1240	0.44	-0.8
1,267,968	-		GFF1240	0.44	-1.8
1,267,973	-		GFF1240	0.45	-1.0
1,267,973	-		GFF1240	0.45	+0.8
1,267,994	-		GFF1240	0.47	+0.8
1,268,016	+		GFF1240	0.50	+0.4
1,268,016	+		GFF1240	0.50	+0.6
1,268,035	-		GFF1240	0.52	-1.3
1,268,035	-		GFF1240	0.52	-0.7
1,268,040	+		GFF1240	0.53	-0.6
1,268,047	-		GFF1240	0.54	-0.6
1,268,048	-		GFF1240	0.54	-0.5
1,268,061	+		GFF1240	0.55	+0.7
1,268,071	-		GFF1240	0.56	-1.0
1,268,076	-		GFF1240	0.57	+1.0
1,268,076	-		GFF1240	0.57	-0.5
1,268,101	-		GFF1240	0.60	-0.6
1,268,178	+		GFF1240	0.69	-2.4
1,268,178	+		GFF1240	0.69	-0.4
1,268,178	+		GFF1240	0.69	+0.3
1,268,186	-		GFF1240	0.70	+0.3
1,268,186	-		GFF1240	0.70	+0.3
1,268,186	-		GFF1240	0.70	-0.3
1,268,186	-		GFF1240	0.70	+0.7
1,268,186	-		GFF1240	0.70	-2.2
1,268,186	-		GFF1240	0.70	-0.0
1,268,213	-		GFF1240	0.73	+0.9
1,268,228	-		GFF1240	0.75	-1.2
1,268,243	+		GFF1240	0.77	-0.0
1,268,243	+		GFF1240	0.77	-1.1
1,268,248	+		GFF1240	0.78	+0.0
1,268,248	+		GFF1240	0.78	+0.6
1,268,248	+		GFF1240	0.78	+0.1
1,268,256	-		GFF1240	0.78	-1.8
1,268,256	-		GFF1240	0.78	+0.2
1,268,256	-		GFF1240	0.78	-0.0
1,268,256	-		GFF1240	0.78	-2.3
1,268,277	-		GFF1240	0.81	+0.2
1,268,291	+		GFF1240	0.83	+0.5
1,268,347	+		GFF1240	0.89	-1.1
1,268,357	+				-1.9
1,268,370	+				-0.7
1,268,370	+				+0.4
1,268,370	+				-0.8
1,268,370	+				-0.0
1,268,370	+				-2.0
1,268,370	+				+0.5
1,268,370	+				-0.1
1,268,370	+				+0.0
1,268,370	+				+0.2
1,268,375	+				+1.6
1,268,377	+				-2.8
1,268,377	+				-0.7
1,268,377	+				+0.2
1,268,378	-				+0.2
1,268,378	-				+1.2
1,268,378	-				-0.8
1,268,378	-				+0.0
1,268,378	-				+1.0
1,268,378	-				-0.2
1,268,380	-				-0.0
1,268,385	-				-0.7
1,268,401	+				+0.9
1,268,428	-				-0.8
1,268,439	+				-0.5
1,268,439	+				-1.0
1,268,439	+				-0.8
1,268,447	-				+1.2
1,268,447	-				+0.4
1,268,485	+				-0.2
1,268,504	+				-2.7
1,268,505	-				+0.4
1,268,516	+				-0.9
1,268,524	+				-1.0
1,268,524	+				+0.7
1,268,524	+				+0.3
1,268,524	+				-0.1
1,268,534	+				+0.0
1,268,575	+		GFF1241	0.13	+1.0
1,268,578	+		GFF1241	0.14	+0.0
1,268,578	-		GFF1241	0.14	+1.5
1,268,578	-		GFF1241	0.14	-0.8
1,268,583	-		GFF1241	0.14	-0.5
1,268,583	-		GFF1241	0.14	-0.2
1,268,586	-		GFF1241	0.15	-1.3
1,268,586	-		GFF1241	0.15	-2.3
1,268,596	-		GFF1241	0.16	+0.3
1,268,608	+		GFF1241	0.17	+0.2
1,268,621	-		GFF1241	0.18	+0.6
1,268,623	+		GFF1241	0.18	+0.3
1,268,631	+		GFF1241	0.19	-1.2
1,268,639	-		GFF1241	0.20	-0.1
1,268,652	+		GFF1241	0.21	-1.1
1,268,652	+		GFF1241	0.21	+0.9
1,268,660	-		GFF1241	0.22	-1.0
1,268,662	-		GFF1241	0.22	-1.2
1,268,685	-		GFF1241	0.24	+1.0
1,268,718	+		GFF1241	0.28	-2.3
1,268,718	+		GFF1241	0.28	-0.4
1,268,718	+		GFF1241	0.28	+0.5
1,268,726	-		GFF1241	0.29	+0.2
1,268,726	-		GFF1241	0.29	+0.8
1,268,726	-		GFF1241	0.29	+0.3
1,268,726	-		GFF1241	0.29	+0.3
1,268,726	-		GFF1241	0.29	-1.4
1,268,726	-		GFF1241	0.29	+0.1
1,268,726	-		GFF1241	0.29	-2.7
1,268,726	-		GFF1241	0.29	-1.0
1,268,729	+		GFF1241	0.29	+1.5
1,268,776	+		GFF1241	0.34	-1.3
1,268,779	-		GFF1241	0.34	-1.1
1,268,833	-		GFF1241	0.39	+0.5
1,268,841	+		GFF1241	0.40	+0.3
1,268,857	-		GFF1241	0.42	-1.7
1,268,860	+		GFF1241	0.42	-1.4
1,268,866	+		GFF1241	0.43	-0.1
1,268,870	+		GFF1241	0.43	+0.2
1,268,896	+		GFF1241	0.46	-0.4
1,268,914	+		GFF1241	0.47	-0.0
1,268,937	-		GFF1241	0.50	-0.1
1,268,939	+		GFF1241	0.50	-0.0
1,268,988	+		GFF1241	0.55	-0.8
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