Strain Fitness in Sphingobium sp. HT1-2 around GFF1110

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,110,753	-		GFF1109	0.22	-0.8
1,111,018	+				-2.4
1,111,072	-				+0.4
1,111,158	-				-0.9
1,111,347	-				-0.8
1,111,380	+				-0.2
1,111,439	+				+0.4
1,111,475	-				+0.7
1,111,475	-				+0.0
1,111,519	+				-1.4
1,111,527	-				-0.9
1,111,546	-				-0.2
1,111,546	-				-0.8
1,111,561	-				-0.4
1,111,561	-				-0.6
1,111,562	+				-0.3
1,111,562	+				-0.4
1,111,570	-				-0.1
1,111,579	+				-0.7
1,111,595	-				-0.4
1,111,633	-				-0.1
1,111,635	-				-2.1
1,111,650	-				-1.1
1,111,652	-				-0.5
1,111,666	+				+0.1
1,111,672	+				+0.1
1,111,674	-				-0.0
1,111,675	+				-0.8
1,111,695	+				+0.0
1,111,703	-				+0.4
1,111,704	+				-1.3
1,111,736	+				+0.3
1,111,736	+				-1.6
1,111,744	-				+0.7
1,111,744	-				+0.5
1,111,751	+				+1.0
1,111,759	-				-0.1
1,111,771	+				-0.9
1,111,779	+				-0.6
1,111,779	+				-0.1
1,111,779	+				+0.3
1,111,779	+				-0.9
1,111,779	+				-1.4
1,111,779	+				+0.3
1,111,779	+				-0.9
1,111,779	+				-0.4
1,111,787	-				-0.4
1,111,787	-				-0.7
1,111,787	-				+0.1
1,111,787	-				-1.8
1,111,789	+				+0.3
1,111,792	+				-0.3
1,111,794	-				-0.2
1,111,818	+				-0.3
1,111,818	+				-1.0
1,111,818	+				+0.8
1,111,818	+				+0.6
1,111,818	+				-0.1
1,111,818	+				-0.6
1,111,818	+				-0.5
1,111,818	+				-0.9
1,111,818	+				+0.6
1,111,818	+				-2.0
1,111,826	-				+1.0
1,111,826	-				-0.2
1,111,826	-				-0.6
1,111,826	-				+0.3
1,111,826	-				-2.1
1,111,826	-				-1.6
1,111,826	-				-0.6
1,111,826	-				+0.6
1,111,826	-				+0.4
1,111,826	-				-1.8
1,111,845	-				-1.0
1,111,847	+				+0.3
1,111,898	+		GFF1110	0.10	+0.4
1,111,898	+		GFF1110	0.10	+1.3
1,111,898	+		GFF1110	0.10	+0.3
1,111,898	+		GFF1110	0.10	-0.2
1,111,898	+		GFF1110	0.10	-1.0
1,111,898	+		GFF1110	0.10	-0.3
1,111,898	+		GFF1110	0.10	+0.3
1,111,903	+		GFF1110	0.11	-1.7
1,111,903	+		GFF1110	0.11	+0.3
1,111,903	+		GFF1110	0.11	-1.1
1,111,906	-		GFF1110	0.11	-1.6
1,111,906	-		GFF1110	0.11	-0.8
1,111,906	-		GFF1110	0.11	+1.4
1,111,906	-		GFF1110	0.11	-0.6
1,111,906	-		GFF1110	0.11	-1.3
1,111,906	-		GFF1110	0.11	-0.7
1,111,906	-		GFF1110	0.11	+0.8
1,111,906	-		GFF1110	0.11	-1.3
1,111,906	-		GFF1110	0.11	-0.7
1,111,906	-		GFF1110	0.11	-0.5
1,111,906	-		GFF1110	0.11	-0.2
1,111,906	-		GFF1110	0.11	-1.9
1,111,906	-		GFF1110	0.11	+0.6
1,111,906	-		GFF1110	0.11	+1.2
1,111,906	-		GFF1110	0.11	-1.2
1,111,908	+		GFF1110	0.11	-0.2
1,111,911	-		GFF1110	0.11	-0.7
1,111,911	-		GFF1110	0.11	+0.4
1,111,911	-		GFF1110	0.11	+0.7
1,111,911	-		GFF1110	0.11	+0.0
1,111,922	-		GFF1110	0.12	+0.4
1,111,922	-		GFF1110	0.12	+0.3
1,111,968	+		GFF1110	0.16	+0.2
1,111,973	+		GFF1110	0.16	+0.4
1,111,973	+		GFF1110	0.16	-2.2
1,111,978	+		GFF1110	0.16	-0.4
1,111,995	+		GFF1110	0.17	-0.5
1,111,995	+		GFF1110	0.17	-1.4
1,111,999	-		GFF1110	0.18	+0.0
1,111,999	-		GFF1110	0.18	-0.1
1,112,011	-		GFF1110	0.19	-0.4
1,112,024	-		GFF1110	0.20	-1.4
1,112,038	+		GFF1110	0.21	+0.1
1,112,055	+		GFF1110	0.22	-0.1
1,112,072	-		GFF1110	0.23	-0.8
1,112,073	+		GFF1110	0.23	-0.2
1,112,073	+		GFF1110	0.23	-0.8
1,112,073	+		GFF1110	0.23	-0.2
1,112,080	-		GFF1110	0.24	+1.2
1,112,081	-		GFF1110	0.24	-0.1
1,112,081	-		GFF1110	0.24	-1.8
1,112,092	-		GFF1110	0.24	+1.0
1,112,105	+		GFF1110	0.25	+0.3
1,112,119	+		GFF1110	0.26	+0.5
1,112,119	+		GFF1110	0.26	+0.5
1,112,127	-		GFF1110	0.27	+0.6
1,112,129	+		GFF1110	0.27	-0.3
1,112,137	-		GFF1110	0.28	+0.9
1,112,137	-		GFF1110	0.28	+0.5
1,112,137	-		GFF1110	0.28	+1.3
1,112,137	-		GFF1110	0.28	-1.1
1,112,140	+		GFF1110	0.28	+0.6
1,112,148	-		GFF1110	0.28	-0.3
1,112,191	+		GFF1110	0.32	+0.2
1,112,225	+		GFF1110	0.34	-0.2
1,112,227	+		GFF1110	0.34	-0.3
1,112,227	+		GFF1110	0.34	-1.4
1,112,227	+		GFF1110	0.34	-0.9
1,112,227	+		GFF1110	0.34	-0.8
1,112,227	+		GFF1110	0.34	-0.4
1,112,227	+		GFF1110	0.34	-0.2
1,112,232	+		GFF1110	0.35	+0.0
1,112,235	-		GFF1110	0.35	-2.0
1,112,238	+		GFF1110	0.35	-1.7
1,112,246	-		GFF1110	0.36	-0.2
1,112,278	-		GFF1110	0.38	+1.4
1,112,284	+		GFF1110	0.38	+0.2
1,112,290	-		GFF1110	0.39	+0.6
1,112,299	+		GFF1110	0.39	+0.5
1,112,299	+		GFF1110	0.39	-0.4
1,112,301	-		GFF1110	0.40	-0.3
1,112,304	+		GFF1110	0.40	+0.1
1,112,304	+		GFF1110	0.40	-1.7
1,112,311	+		GFF1110	0.40	-1.1
1,112,312	+		GFF1110	0.40	-2.2
1,112,312	-		GFF1110	0.40	+0.3
1,112,312	-		GFF1110	0.40	-1.0
1,112,313	-		GFF1110	0.40	-1.3
1,112,316	+		GFF1110	0.41	+0.1
1,112,316	+		GFF1110	0.41	-1.0
1,112,316	+		GFF1110	0.41	+0.2
1,112,319	-		GFF1110	0.41	+0.8
1,112,319	-		GFF1110	0.41	-0.5
1,112,319	-		GFF1110	0.41	-0.6
1,112,319	-		GFF1110	0.41	-0.1
1,112,324	-		GFF1110	0.41	-1.7
1,112,329	-		GFF1110	0.42	-1.7
1,112,330	+		GFF1110	0.42	+0.3
1,112,340	-		GFF1110	0.42	-0.2
1,112,349	+		GFF1110	0.43	-1.7
1,112,349	+		GFF1110	0.43	-1.3
1,112,349	+		GFF1110	0.43	+1.1
1,112,349	+		GFF1110	0.43	+0.3
1,112,349	+		GFF1110	0.43	-2.1
1,112,349	+		GFF1110	0.43	-1.7
1,112,357	-		GFF1110	0.44	-0.3
1,112,357	-		GFF1110	0.44	-2.1
1,112,362	-		GFF1110	0.44	-1.8
1,112,362	-		GFF1110	0.44	-0.1
1,112,364	-		GFF1110	0.44	-0.8
1,112,382	+		GFF1110	0.45	+0.6
1,112,382	+		GFF1110	0.45	-0.7
1,112,382	+		GFF1110	0.45	-0.6
1,112,390	-		GFF1110	0.46	+0.6
1,112,399	-		GFF1110	0.47	+0.4
1,112,401	+		GFF1110	0.47	+0.9
1,112,401	+		GFF1110	0.47	-1.2
1,112,409	-		GFF1110	0.47	-3.1
1,112,409	-		GFF1110	0.47	+1.0
1,112,409	-		GFF1110	0.47	+0.2
1,112,413	+		GFF1110	0.48	+0.3
1,112,418	+		GFF1110	0.48	-0.7
1,112,425	+		GFF1110	0.48	+0.0
1,112,426	-		GFF1110	0.49	-0.3
1,112,427	+		GFF1110	0.49	+0.4
1,112,433	-		GFF1110	0.49	-0.6
1,112,433	-		GFF1110	0.49	+0.0
1,112,434	-		GFF1110	0.49	-1.0
1,112,435	-		GFF1110	0.49	+0.4
1,112,440	+		GFF1110	0.50	-0.2
1,112,440	-		GFF1110	0.50	+0.6
1,112,447	+		GFF1110	0.50	-0.6
1,112,448	-		GFF1110	0.50	+0.1
1,112,455	-		GFF1110	0.51	+0.3
1,112,457	+		GFF1110	0.51	-2.2
1,112,457	+		GFF1110	0.51	-0.4
1,112,459	+		GFF1110	0.51	-2.1
1,112,459	+		GFF1110	0.51	-0.3
1,112,460	-		GFF1110	0.51	-0.2
1,112,462	+		GFF1110	0.51	+0.3
1,112,465	-		GFF1110	0.51	-1.9
1,112,465	-		GFF1110	0.51	+0.6
1,112,465	-		GFF1110	0.51	-2.3
1,112,468	-		GFF1110	0.52	+0.9
1,112,470	-		GFF1110	0.52	-1.3
1,112,502	+		GFF1110	0.54	-1.9
1,112,505	-		GFF1110	0.54	-2.4
1,112,517	+		GFF1110	0.55	+0.1
1,112,527	+		GFF1110	0.56	+0.3
1,112,527	+		GFF1110	0.56	-1.6
1,112,535	-		GFF1110	0.56	+0.2
1,112,535	-		GFF1110	0.56	+0.6
1,112,535	-		GFF1110	0.56	-0.4
1,112,535	-		GFF1110	0.56	-0.0
1,112,535	-		GFF1110	0.56	-1.9
1,112,535	-		GFF1110	0.56	+0.3
1,112,539	+		GFF1110	0.57	+0.2
1,112,547	-		GFF1110	0.57	-1.7
1,112,549	-		GFF1110	0.57	-0.5
1,112,555	-		GFF1110	0.58	-0.8
1,112,565	+		GFF1110	0.59	-1.4
1,112,583	-		GFF1110	0.60	+0.1
1,112,583	-		GFF1110	0.60	-0.4
1,112,587	+		GFF1110	0.60	-0.8
1,112,596	+		GFF1110	0.61	-1.2
1,112,611	+		GFF1110	0.62	-0.9
1,112,619	-		GFF1110	0.62	+0.1
1,112,619	-		GFF1110	0.62	+0.2
1,112,642	-		GFF1110	0.64	+0.0
1,112,643	+		GFF1110	0.64	-1.0
1,112,660	-		GFF1110	0.65	-1.3
1,112,660	-		GFF1110	0.65	+0.8
1,112,668	-		GFF1110	0.66	+0.6
1,112,695	+		GFF1110	0.68	-0.2
1,112,703	+		GFF1110	0.69	-0.3
1,112,708	-		GFF1110	0.69	+0.2
1,112,713	-		GFF1110	0.69	-1.0
1,112,715	+		GFF1110	0.69	+0.1
1,112,715	+		GFF1110	0.69	-3.2
1,112,718	-		GFF1110	0.70	-1.1
1,112,725	+		GFF1110	0.70	-0.1
1,112,739	+		GFF1110	0.71	-1.3
1,112,739	+		GFF1110	0.71	-0.3
1,112,739	+		GFF1110	0.71	+0.3
1,112,739	+		GFF1110	0.71	-1.8
1,112,739	+		GFF1110	0.71	+1.1
1,112,747	-		GFF1110	0.72	+0.9
1,112,747	-		GFF1110	0.72	+0.0
1,112,747	-		GFF1110	0.72	+0.7
1,112,747	-		GFF1110	0.72	+0.6
1,112,747	-		GFF1110	0.72	+0.6
1,112,747	-		GFF1110	0.72	-1.5
1,112,747	-		GFF1110	0.72	+1.2
1,112,764	+		GFF1110	0.73	+0.3
1,112,777	-		GFF1110	0.74	-0.2
1,112,783	+		GFF1110	0.74	-0.8
1,112,785	+		GFF1110	0.74	+0.4
1,112,785	+		GFF1110	0.74	-1.4
1,112,786	+		GFF1110	0.75	+1.4
1,112,793	-		GFF1110	0.75	-1.2
1,112,821	+		GFF1110	0.77	+1.1
1,112,837	-		GFF1110	0.78	-0.6
1,112,846	-		GFF1110	0.79	-0.9
1,112,848	-		GFF1110	0.79	+0.9
1,112,881	+		GFF1110	0.81	-0.3
1,112,881	+		GFF1110	0.81	-1.0
1,112,881	+		GFF1110	0.81	-0.3
1,112,881	+		GFF1110	0.81	-0.6
1,112,881	+		GFF1110	0.81	-1.1
1,112,886	+		GFF1110	0.82	-0.1
1,112,889	-		GFF1110	0.82	+0.7
1,112,889	-		GFF1110	0.82	-0.4
1,112,889	-		GFF1110	0.82	-1.5
1,112,889	-		GFF1110	0.82	-0.9
1,112,889	-		GFF1110	0.82	-0.2
1,112,889	-		GFF1110	0.82	-0.1
1,112,890	+		GFF1110	0.82	+0.4
1,112,897	+		GFF1110	0.83	-0.4
1,112,897	+		GFF1110	0.83	-1.4
1,112,897	+		GFF1110	0.83	+0.6
1,112,897	+		GFF1110	0.83	-0.3
1,112,897	+		GFF1110	0.83	+0.7
1,112,897	+		GFF1110	0.83	+1.4
1,112,897	+		GFF1110	0.83	+0.0
1,112,897	+		GFF1110	0.83	-0.4
1,112,897	+		GFF1110	0.83	+0.7
1,112,898	-		GFF1110	0.83	+0.5
1,112,903	+		GFF1110	0.83	+0.7
1,112,904	-		GFF1110	0.83	-1.6
1,112,905	-		GFF1110	0.83	-0.3
1,112,905	-		GFF1110	0.83	+0.9
1,112,905	-		GFF1110	0.83	-0.1
1,112,905	-		GFF1110	0.83	+0.6
1,112,905	-		GFF1110	0.83	-0.1
1,112,905	-		GFF1110	0.83	-1.4
1,112,905	-		GFF1110	0.83	+0.1
1,112,905	-		GFF1110	0.83	-0.7
1,112,915	-		GFF1110	0.84	+1.2
1,112,959	+		GFF1110	0.87	+0.2
1,112,981	+		GFF1110	0.89	-0.8
1,112,989	-		GFF1110	0.89	-0.5
1,112,989	-		GFF1110	0.89	+0.1
1,113,000	+				+0.9
1,113,008	-				+0.6
1,113,008	-				-0.7
1,113,009	-				+1.9
1,113,048	+				-0.9
1,113,056	-				-2.1
1,113,074	-				+0.7
1,113,087	+				+1.5
1,113,087	+				-0.2
1,113,087	+				+0.3
1,113,095	-				-0.8
1,113,106	+				-2.4
1,113,114	-				+1.2
1,113,131	-				-1.7
1,113,134	+				+0.0
1,113,134	+				-0.1
1,113,134	+				-0.4
1,113,134	+				+0.3
1,113,134	+				-0.7
1,113,134	+				-0.4
1,113,139	+				+1.1
1,113,139	+				-0.4
1,113,139	+				+1.0
1,113,139	+				-1.4
1,113,139	+				+1.4
1,113,139	+				+0.1
1,113,139	+				+0.3
1,113,139	+				-1.2
1,113,142	-				-0.8
1,113,142	-				-0.3
1,113,142	-				+0.0
1,113,142	-				-1.1
1,113,142	-				-1.3
1,113,147	-				-0.2
1,113,147	-				-0.4
1,113,147	-				+0.3
1,113,147	-				+0.9
1,113,147	-				-3.2
1,113,152	-				-0.1
1,113,162	+				-1.9
1,113,206	+				+0.4
1,113,208	+				+0.0
1,113,208	+				+0.7
1,113,216	-				-0.3
1,113,461	-				-0.3
1,113,463	-				+0.3
1,113,472	+				-0.7
1,113,472	+				-0.7
1,113,475	-				-1.7
1,113,475	-				-2.2
1,113,480	-		GFF1111	0.11	-2.2
1,113,480	-		GFF1111	0.11	-0.4
1,113,511	+		GFF1111	0.25	+0.6
1,113,511	+		GFF1111	0.25	-1.9
1,113,519	-		GFF1111	0.28	-1.4
1,113,519	-		GFF1111	0.28	+0.0
1,113,519	-		GFF1111	0.28	+0.2
1,113,531	+		GFF1111	0.34	-0.0
1,113,531	+		GFF1111	0.34	-0.4
1,113,540	-		GFF1111	0.38	+0.8
1,113,562	-		GFF1111	0.48	-1.4
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