Strain Fitness in Sphingobium sp. HT1-2 around GFF1097

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,098,423	-		GFF1095	0.70	-0.1
1,098,480	-		GFF1095	0.83	+1.2
1,098,527	-				+0.7
1,098,535	+				-0.0
1,098,544	+				-1.6
1,098,549	+				-0.2
1,098,560	+				-2.4
1,098,565	+				-0.3
1,098,568	-				-0.7
1,098,570	+				-0.3
1,098,575	+				-0.9
1,098,575	+				-1.1
1,098,575	+				+0.3
1,098,575	+				-0.2
1,098,575	+				-0.9
1,098,578	-				-1.2
1,098,583	-				+0.2
1,098,583	-				+0.2
1,098,583	-				-0.1
1,098,593	+				-1.6
1,098,593	+				+0.4
1,098,606	-				+0.3
1,098,622	+				+0.6
1,098,622	+				-0.8
1,098,664	+				+0.5
1,098,664	+				+1.3
1,098,664	+				+1.0
1,098,664	+				+0.7
1,098,664	+				+0.5
1,098,664	-				-0.3
1,098,672	-				-0.3
1,098,672	-				+0.5
1,098,672	-				-1.4
1,098,672	-				+0.4
1,098,672	-				+0.5
1,098,672	-				+0.2
1,098,680	+				-0.6
1,098,680	+				-0.2
1,098,688	-				-0.2
1,098,690	+				+0.0
1,098,690	+				+0.1
1,098,690	+				-1.9
1,098,698	-				-0.4
1,098,710	+				-0.6
1,098,710	+				-0.0
1,098,729	-				-1.8
1,098,730	-				-0.5
1,098,745	+				-0.1
1,098,745	+				+0.8
1,098,752	+				-1.6
1,098,753	-				+0.9
1,098,753	-				-0.7
1,098,757	+				+0.4
1,098,757	+				-0.9
1,098,757	+				-0.3
1,098,759	+				-0.6
1,098,765	-				+0.0
1,098,765	-				-1.2
1,098,765	-				-0.7
1,098,765	-				-0.7
1,098,765	-				-0.8
1,098,765	-				-0.4
1,098,767	+				-0.1
1,098,767	-				-2.5
1,098,774	-				-0.2
1,098,775	-				-2.0
1,098,775	-				+0.7
1,098,782	+				+1.4
1,098,834	+				+0.3
1,098,834	+				-0.5
1,098,853	+				+0.3
1,098,853	+				+1.0
1,098,858	+				-1.6
1,098,883	+				-1.7
1,098,883	+				+0.2
1,098,883	+				-0.9
1,098,891	-				+0.6
1,098,891	-				+0.6
1,098,908	+				-0.2
1,098,908	+				+0.7
1,098,908	+				-0.3
1,098,908	+				+0.1
1,098,908	+				-0.3
1,098,908	+				+0.2
1,098,908	+				-1.2
1,098,908	+				+0.4
1,098,916	-				-0.5
1,098,916	-				+0.1
1,098,916	-				+0.0
1,098,927	+				+0.1
1,098,939	+				+0.0
1,098,948	+				+0.8
1,098,953	+				-0.3
1,098,956	-				-0.9
1,098,956	-				+0.4
1,098,957	-				+0.1
1,098,957	-				-0.8
1,098,974	+				+0.6
1,098,974	+				+0.0
1,098,974	+				-1.0
1,099,032	-				-0.6
1,099,055	-				+0.7
1,099,079	-				+0.2
1,099,107	+				+0.7
1,099,107	+				-0.3
1,099,115	-		GFF1096	0.11	-2.9
1,099,121	-		GFF1096	0.13	+0.1
1,099,153	-		GFF1096	0.24	+0.3
1,099,170	+		GFF1096	0.30	+0.1
1,099,170	+		GFF1096	0.30	-1.1
1,099,176	+		GFF1096	0.32	+0.1
1,099,178	-		GFF1096	0.33	-1.1
1,099,178	-		GFF1096	0.33	+0.2
1,099,178	-		GFF1096	0.33	-1.4
1,099,183	-		GFF1096	0.34	+0.0
1,099,199	-		GFF1096	0.40	-1.1
1,099,200	+		GFF1096	0.40	+0.4
1,099,213	-		GFF1096	0.45	-2.2
1,099,222	+		GFF1096	0.48	+0.5
1,099,222	+		GFF1096	0.48	-1.7
1,099,222	+		GFF1096	0.48	-2.4
1,099,222	+		GFF1096	0.48	+0.0
1,099,222	-		GFF1096	0.48	-0.1
1,099,230	-		GFF1096	0.51	+0.2
1,099,232	+		GFF1096	0.51	+1.1
1,099,232	+		GFF1096	0.51	+0.3
1,099,244	+		GFF1096	0.56	-0.8
1,099,256	-		GFF1096	0.60	+0.0
1,099,265	+		GFF1096	0.63	-0.2
1,099,265	+		GFF1096	0.63	+0.1
1,099,265	+		GFF1096	0.63	-2.2
1,099,265	+		GFF1096	0.63	-0.7
1,099,265	+		GFF1096	0.63	+0.0
1,099,265	+		GFF1096	0.63	-0.5
1,099,265	+		GFF1096	0.63	+0.4
1,099,265	+		GFF1096	0.63	-1.2
1,099,267	+		GFF1096	0.64	-0.2
1,099,273	-		GFF1096	0.66	+0.5
1,099,273	-		GFF1096	0.66	+0.6
1,099,273	-		GFF1096	0.66	-1.7
1,099,273	-		GFF1096	0.66	-0.4
1,099,273	-		GFF1096	0.66	-1.0
1,099,273	-		GFF1096	0.66	-0.5
1,099,273	-		GFF1096	0.66	+0.4
1,099,273	-		GFF1096	0.66	+0.3
1,099,275	-		GFF1096	0.66	-0.0
1,099,275	-		GFF1096	0.66	+1.1
1,099,283	+		GFF1096	0.69	+0.5
1,099,289	+		GFF1096	0.71	-0.2
1,099,308	+		GFF1096	0.78	-1.2
1,099,308	+		GFF1096	0.78	+0.5
1,099,316	-		GFF1096	0.81	+0.3
1,099,321	-		GFF1096	0.82	-1.4
1,099,344	+				-0.1
1,099,357	+				+0.8
1,099,360	+				+1.3
1,099,363	-				-0.8
1,099,364	+				+0.5
1,099,365	-				-0.5
1,099,370	-				+0.4
1,099,374	+				-1.7
1,099,381	+				+0.1
1,099,381	+				-0.3
1,099,381	+				-1.1
1,099,382	-				+0.2
1,099,389	-				+0.2
1,099,389	-				+0.4
1,099,389	-				-0.4
1,099,389	-				+0.0
1,099,389	-				-2.1
1,099,389	-				+0.8
1,099,412	-				-0.1
1,099,419	+				-0.6
1,099,427	-				-0.1
1,099,450	+		GFF1097	0.11	-1.6
1,099,452	+		GFF1097	0.12	+0.0
1,099,452	+		GFF1097	0.12	-0.9
1,099,475	+		GFF1097	0.21	-1.8
1,099,475	+		GFF1097	0.21	+0.8
1,099,478	-		GFF1097	0.22	-0.5
1,099,478	-		GFF1097	0.22	-0.0
1,099,478	-		GFF1097	0.22	+0.0
1,099,483	-		GFF1097	0.24	-2.2
1,099,483	-		GFF1097	0.24	-1.2
1,099,483	-		GFF1097	0.24	+0.4
1,099,483	-		GFF1097	0.24	-0.6
1,099,483	-		GFF1097	0.24	-1.0
1,099,483	-		GFF1097	0.24	+0.7
1,099,488	-		GFF1097	0.26	+0.1
1,099,489	-		GFF1097	0.26	-0.7
1,099,495	-		GFF1097	0.29	-1.6
1,099,495	-		GFF1097	0.29	-0.3
1,099,502	+		GFF1097	0.31	-0.2
1,099,502	+		GFF1097	0.31	-0.1
1,099,502	+		GFF1097	0.31	-0.2
1,099,502	+		GFF1097	0.31	+0.6
1,099,502	+		GFF1097	0.31	+1.5
1,099,502	+		GFF1097	0.31	+1.1
1,099,502	+		GFF1097	0.31	+0.9
1,099,502	+		GFF1097	0.31	-1.4
1,099,502	+		GFF1097	0.31	-1.0
1,099,510	-		GFF1097	0.35	-0.2
1,099,510	-		GFF1097	0.35	-1.9
1,099,510	-		GFF1097	0.35	-0.4
1,099,510	-		GFF1097	0.35	-1.4
1,099,510	-		GFF1097	0.35	-0.1
1,099,517	+		GFF1097	0.37	-1.0
1,099,525	-		GFF1097	0.40	-0.6
1,099,525	-		GFF1097	0.40	-2.1
1,099,534	+		GFF1097	0.44	-1.4
1,099,534	+		GFF1097	0.44	-0.5
1,099,541	+		GFF1097	0.47	-0.2
1,099,542	-		GFF1097	0.47	+0.3
1,099,542	-		GFF1097	0.47	-0.1
1,099,542	-		GFF1097	0.47	-0.9
1,099,549	-		GFF1097	0.50	+0.6
1,099,549	-		GFF1097	0.50	-0.4
1,099,554	-		GFF1097	0.52	-1.0
1,099,567	+		GFF1097	0.57	-0.4
1,099,579	-		GFF1097	0.62	+0.5
1,099,584	-		GFF1097	0.64	-0.3
1,099,612	+		GFF1097	0.75	+0.3
1,099,612	+		GFF1097	0.75	+0.5
1,099,612	+		GFF1097	0.75	-0.8
1,099,612	+		GFF1097	0.75	+0.4
1,099,612	+		GFF1097	0.75	-0.1
1,099,612	+		GFF1097	0.75	-0.5
1,099,620	-		GFF1097	0.78	-1.0
1,099,620	-		GFF1097	0.78	+0.2
1,099,620	-		GFF1097	0.78	-1.0
1,099,620	-		GFF1097	0.78	+0.4
1,099,620	-		GFF1097	0.78	+0.7
1,099,620	-		GFF1097	0.78	+0.4
1,099,620	-		GFF1097	0.78	-1.3
1,099,620	-		GFF1097	0.78	-1.5
1,099,633	+		GFF1097	0.83	+0.3
1,099,633	+		GFF1097	0.83	+0.8
1,099,633	+		GFF1097	0.83	+0.1
1,099,633	+		GFF1097	0.83	+1.0
1,099,638	+		GFF1097	0.85	+0.7
1,099,638	+		GFF1097	0.85	-0.5
1,099,641	-		GFF1097	0.86	+0.2
1,099,641	-		GFF1097	0.86	+0.6
1,099,646	-		GFF1097	0.88	-2.6
1,099,651	+				+0.1
1,099,656	+				-0.5
1,099,660	+				-0.4
1,099,660	+				-1.2
1,099,664	-				+0.2
1,099,664	-				-1.7
1,099,686	+				-1.0
1,099,688	+				-0.6
1,099,694	-				-0.1
1,099,705	+				+1.1
1,099,708	-		GFF1098	0.11	+1.6
1,099,708	-		GFF1098	0.11	-0.3
1,099,727	-		GFF1098	0.21	-1.6
1,099,746	-		GFF1098	0.32	+1.0
1,099,748	+		GFF1098	0.33	-0.4
1,099,755	+		GFF1098	0.37	-1.1
1,099,801	+		GFF1098	0.62	-0.9
1,099,801	+		GFF1098	0.62	-1.1
1,099,801	+		GFF1098	0.62	+0.5
1,099,809	-		GFF1098	0.67	+0.8
1,099,810	+		GFF1098	0.67	+1.2
1,099,818	-		GFF1098	0.72	+0.3
1,099,824	+		GFF1098	0.75	-1.8
1,099,830	+		GFF1098	0.78	+0.0
1,099,832	-		GFF1098	0.79	-0.6
1,099,838	-		GFF1098	0.83	+0.4
1,099,869	-				-0.5
1,099,897	+				-1.2
1,099,901	-				-0.7
1,099,903	-				+0.8
1,099,915	+				+0.2
1,099,946	-				-0.8
1,099,963	+				-0.1
1,099,963	-				+0.2
1,099,970	+				+0.1
1,099,971	-				+0.5
1,100,045	+				-0.7
1,100,045	+				-1.5
1,100,045	+				-0.1
1,100,045	+				-2.2
1,100,045	+				+0.3
1,100,053	-				-0.6
1,100,053	-				-0.7
1,100,053	-				+0.7
1,100,053	-				-1.4
1,100,063	-				-1.7
1,100,063	-				+0.1
1,100,067	+				+0.1
1,100,109	+		GFF1099	0.33	-3.1
1,100,111	+		GFF1099	0.34	-0.5
1,100,116	+		GFF1099	0.38	-0.8
1,100,123	+		GFF1099	0.43	-2.0
1,100,124	-		GFF1099	0.44	-2.8
1,100,124	-		GFF1099	0.44	+0.5
1,100,131	-		GFF1099	0.49	+0.4
1,100,138	+		GFF1099	0.55	-0.1
1,100,205	-				-0.0
1,100,205	-				-0.3
1,100,246	+				+0.2
1,100,255	+				-0.5
1,100,263	-				+0.1
1,100,263	-				-1.7
1,100,263	-				-0.2
1,100,272	+				-0.4
1,100,329	+				-0.5
1,100,329	+				+0.5
1,100,341	+				-0.7
1,100,342	-				+0.5
1,100,347	-				-1.4
1,100,347	-				+1.0
1,100,352	+				+0.3
1,100,352	+				-0.5
1,100,358	+				-1.6
1,100,366	-				+0.7
1,100,385	-				-0.4
1,100,387	-				+0.3
1,100,389	+				-1.2
1,100,389	+				-0.9
1,100,389	+				+0.3
1,100,389	+				+0.1
1,100,394	+				-0.8
1,100,397	-				+0.6
1,100,397	-				+0.4
1,100,405	-				+0.3
1,100,411	+				+0.5
1,100,418	+				-0.4
1,100,418	+				+0.9
1,100,419	-				-2.0
1,100,436	-				-0.8
1,100,444	+				-0.8
1,100,444	+				-0.3
1,100,444	+				-2.4
1,100,445	+				-0.3
1,100,445	+				-0.8
1,100,445	+				-1.6
1,100,445	+				+0.6
1,100,445	+				+0.7
1,100,452	+				-0.6
1,100,452	+				-0.1
1,100,452	-				+0.6
1,100,452	-				-0.0
1,100,452	-				+0.8
1,100,453	-				+0.1
1,100,453	-				-1.1
1,100,453	-				+0.6
1,100,453	-				+0.1
1,100,453	-				-0.1
1,100,453	-				+0.1
1,100,453	-				-1.5
1,100,453	-				-0.7
1,100,453	-				-0.7
1,100,455	+				-1.3
1,100,457	+				+0.2
1,100,464	+				-0.9
1,100,464	+				+1.2
1,100,464	+				+0.6
1,100,465	-				-1.2
1,100,471	+				-1.0
1,100,472	-				-0.1
1,100,472	-				-0.6
1,100,472	-				+0.1
1,100,472	-				-1.1
1,100,472	-				-0.2
1,100,498	-				+0.8
1,100,532	+				-0.7
1,100,532	+				+0.1
1,100,551	+				+0.4
1,100,556	+				+0.0
1,100,559	-				-1.0
1,100,559	-				+0.6
1,100,559	-				-0.2
1,100,570	+				-1.1
1,100,570	+				+0.7
1,100,577	+				+0.7
1,100,578	-				+0.4
1,100,590	+				-0.6
1,100,590	+				+0.2
1,100,593	-				+0.3
1,100,594	+				-0.4
1,100,594	+				-0.4
1,100,611	+				-0.4
1,100,611	+				-0.8
1,100,619	-				-0.6
1,100,619	-				+0.1
1,100,619	-				-0.5
1,100,634	+				-2.7
1,100,635	+				+0.6
1,100,642	-				+1.0
1,100,660	-				-0.7
1,100,671	+				-1.5
1,100,671	+				-1.2
1,100,671	+				+1.9
1,100,671	+				+0.1
1,100,671	+				+0.4