Strain Fitness in Sphingobium sp. HT1-2 around GFF1060

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,064,160	+		GFF1059	0.29	+0.4
1,064,170	-		GFF1059	0.29	-0.0
1,064,188	+		GFF1059	0.31	-0.9
1,064,188	+		GFF1059	0.31	+0.2
1,064,227	-		GFF1059	0.34	-2.0
1,064,227	-		GFF1059	0.34	-1.6
1,064,243	+		GFF1059	0.35	-0.4
1,064,278	+		GFF1059	0.37	-0.6
1,064,292	+		GFF1059	0.39	+0.7
1,064,316	+		GFF1059	0.40	-0.8
1,064,324	-		GFF1059	0.41	-0.2
1,064,362	+		GFF1059	0.44	-0.9
1,064,382	-		GFF1059	0.45	-1.0
1,064,384	+		GFF1059	0.45	+0.5
1,064,384	+		GFF1059	0.45	-2.0
1,064,384	+		GFF1059	0.45	+1.5
1,064,384	+		GFF1059	0.45	-0.6
1,064,392	-		GFF1059	0.46	-1.2
1,064,392	-		GFF1059	0.46	-2.0
1,064,392	-		GFF1059	0.46	-0.7
1,064,402	+		GFF1059	0.47	+0.8
1,064,402	+		GFF1059	0.47	-0.2
1,064,402	+		GFF1059	0.47	-0.1
1,064,402	+		GFF1059	0.47	-0.1
1,064,420	-		GFF1059	0.48	+1.0
1,064,425	-		GFF1059	0.48	-0.6
1,064,431	-		GFF1059	0.49	-1.9
1,064,435	-		GFF1059	0.49	+0.9
1,064,435	-		GFF1059	0.49	-0.5
1,064,438	+		GFF1059	0.49	-1.7
1,064,443	+		GFF1059	0.50	-0.1
1,064,478	+		GFF1059	0.52	-1.9
1,064,486	-		GFF1059	0.53	+0.6
1,064,499	+		GFF1059	0.54	+1.2
1,064,499	+		GFF1059	0.54	+1.1
1,064,507	-		GFF1059	0.54	+0.5
1,064,507	-		GFF1059	0.54	-0.3
1,064,507	-		GFF1059	0.54	-0.7
1,064,573	+		GFF1059	0.59	-1.8
1,064,577	+		GFF1059	0.60	+0.1
1,064,577	+		GFF1059	0.60	-0.6
1,064,581	-		GFF1059	0.60	+0.3
1,064,585	-		GFF1059	0.60	-0.4
1,064,585	-		GFF1059	0.60	-0.2
1,064,591	-		GFF1059	0.61	-0.9
1,064,619	+		GFF1059	0.63	-0.6
1,064,619	+		GFF1059	0.63	+0.8
1,064,619	+		GFF1059	0.63	-0.3
1,064,635	+		GFF1059	0.64	-2.0
1,064,672	-		GFF1059	0.67	+0.5
1,064,697	+		GFF1059	0.69	+0.8
1,064,723	+		GFF1059	0.71	-1.2
1,064,736	-		GFF1059	0.71	+0.0
1,064,745	+		GFF1059	0.72	+0.3
1,064,779	-		GFF1059	0.75	-1.5
1,064,801	+		GFF1059	0.76	+0.7
1,064,819	+		GFF1059	0.78	+0.4
1,064,824	+		GFF1059	0.78	-0.7
1,064,834	-		GFF1059	0.79	-1.2
1,064,834	-		GFF1059	0.79	-1.0
1,064,843	-		GFF1059	0.79	+0.1
1,064,857	+		GFF1059	0.80	-0.1
1,064,875	+		GFF1059	0.82	-1.2
1,064,888	-		GFF1059	0.83	+0.1
1,064,888	-		GFF1059	0.83	+1.8
1,064,962	+		GFF1059	0.88	-1.5
1,064,962	+		GFF1059	0.88	+0.3
1,064,970	-		GFF1059	0.89	+0.5
1,064,970	-		GFF1059	0.89	-0.9
1,064,970	-		GFF1059	0.89	-0.9
1,064,970	-		GFF1059	0.89	-0.4
1,064,978	-		GFF1059	0.89	-1.4
1,064,980	-		GFF1059	0.90	+0.0
1,064,985	-				-0.5
1,065,002	+				-0.2
1,065,012	+				+0.2
1,065,035	-				+0.1
1,065,044	-				-1.6
1,065,078	-				+0.4
1,065,078	-				-2.2
1,065,078	-				-0.5
1,065,093	+				+0.1
1,065,093	+				-0.3
1,065,112	-				-0.2
1,065,112	-				+0.3
1,065,112	-				-2.6
1,065,117	+				+0.6
1,065,132	+				-0.6
1,065,132	+				+0.1
1,065,157	+				-1.7
1,065,157	+				-1.0
1,065,165	-				-2.1
1,065,165	-				+0.9
1,065,179	+				+0.5
1,065,187	-				+0.3
1,065,187	-				-0.8
1,065,197	+				-0.9
1,065,197	+				-1.4
1,065,197	+				+0.5
1,065,197	+				-0.8
1,065,197	+				-0.4
1,065,197	+				-1.6
1,065,197	+				-1.8
1,065,205	-				-2.5
1,065,205	-				-0.4
1,065,205	-				+0.3
1,065,205	-				-2.3
1,065,205	-				-1.8
1,065,205	-				-0.2
1,065,205	-				+0.4
1,065,205	-				-0.4
1,065,322	+		GFF1060	0.18	+1.0
1,065,326	+		GFF1060	0.18	+0.1
1,065,326	+		GFF1060	0.18	+0.5
1,065,326	+		GFF1060	0.18	-1.2
1,065,326	+		GFF1060	0.18	+0.7
1,065,326	+		GFF1060	0.18	-0.3
1,065,330	-		GFF1060	0.19	+0.2
1,065,334	-		GFF1060	0.19	-1.7
1,065,334	-		GFF1060	0.19	+0.3
1,065,334	-		GFF1060	0.19	+0.8
1,065,334	-		GFF1060	0.19	-0.1
1,065,334	-		GFF1060	0.19	+0.3
1,065,334	-		GFF1060	0.19	+0.4
1,065,334	-		GFF1060	0.19	+1.4
1,065,334	-		GFF1060	0.19	-0.9
1,065,334	-		GFF1060	0.19	-0.4
1,065,334	-		GFF1060	0.19	+1.2
1,065,340	-		GFF1060	0.20	-0.3
1,065,346	-		GFF1060	0.20	+0.5
1,065,346	-		GFF1060	0.20	+0.3
1,065,346	-		GFF1060	0.20	-2.0
1,065,348	+		GFF1060	0.21	-0.2
1,065,354	-		GFF1060	0.21	+0.1
1,065,354	-		GFF1060	0.21	+0.0
1,065,364	-		GFF1060	0.22	-1.5
1,065,364	-		GFF1060	0.22	+0.7
1,065,380	-		GFF1060	0.24	+0.9
1,065,391	+		GFF1060	0.25	-0.6
1,065,391	+		GFF1060	0.25	+0.0
1,065,391	+		GFF1060	0.25	+1.0
1,065,391	+		GFF1060	0.25	+1.2
1,065,394	-		GFF1060	0.26	+0.0
1,065,396	+		GFF1060	0.26	+0.1
1,065,399	-		GFF1060	0.26	-0.1
1,065,399	-		GFF1060	0.26	+0.4
1,065,399	-		GFF1060	0.26	-0.5
1,065,399	-		GFF1060	0.26	+0.0
1,065,399	-		GFF1060	0.26	-1.0
1,065,399	-		GFF1060	0.26	+0.9
1,065,399	-		GFF1060	0.26	-0.6
1,065,399	-		GFF1060	0.26	+0.1
1,065,399	-		GFF1060	0.26	-0.3
1,065,399	-		GFF1060	0.26	-2.0
1,065,399	-		GFF1060	0.26	+0.6
1,065,399	-		GFF1060	0.26	+0.2
1,065,399	-		GFF1060	0.26	-1.1
1,065,399	-		GFF1060	0.26	+0.3
1,065,404	-		GFF1060	0.27	-0.7
1,065,407	+		GFF1060	0.27	+0.3
1,065,410	-		GFF1060	0.27	+0.7
1,065,415	-		GFF1060	0.28	+1.6
1,065,415	-		GFF1060	0.28	+0.7
1,065,429	-		GFF1060	0.29	+0.0
1,065,438	+		GFF1060	0.30	-1.4
1,065,439	+		GFF1060	0.30	-1.2
1,065,460	-		GFF1060	0.33	-2.2
1,065,482	+		GFF1060	0.35	+0.5
1,065,486	-		GFF1060	0.36	+0.2
1,065,487	+		GFF1060	0.36	-3.1
1,065,504	-		GFF1060	0.37	-1.6
1,065,595	-		GFF1060	0.47	+0.5
1,065,635	+		GFF1060	0.52	+0.0
1,065,654	-		GFF1060	0.54	+0.8
1,065,654	-		GFF1060	0.54	+0.2
1,065,660	+		GFF1060	0.54	-0.2
1,065,668	-		GFF1060	0.55	-2.6
1,065,668	-		GFF1060	0.55	-0.1
1,065,669	+		GFF1060	0.55	+0.4
1,065,673	-		GFF1060	0.56	+1.4
1,065,673	-		GFF1060	0.56	-0.2
1,065,673	-		GFF1060	0.56	+0.4
1,065,677	-		GFF1060	0.56	-0.2
1,065,680	+		GFF1060	0.57	+0.1
1,065,687	-		GFF1060	0.57	-0.2
1,065,689	-		GFF1060	0.58	+0.7
1,065,692	-		GFF1060	0.58	+0.2
1,065,695	+		GFF1060	0.58	-2.2
1,065,700	+		GFF1060	0.59	+0.2
1,065,707	+		GFF1060	0.60	-1.2
1,065,707	+		GFF1060	0.60	+1.3
1,065,707	+		GFF1060	0.60	-0.7
1,065,715	-		GFF1060	0.60	-0.3
1,065,721	-		GFF1060	0.61	-0.1
1,065,724	+		GFF1060	0.61	+0.0
1,065,724	+		GFF1060	0.61	-2.3
1,065,724	+		GFF1060	0.61	-1.4
1,065,724	+		GFF1060	0.61	-0.5
1,065,724	+		GFF1060	0.61	+0.2
1,065,724	+		GFF1060	0.61	+0.4
1,065,724	+		GFF1060	0.61	+1.5
1,065,724	+		GFF1060	0.61	+1.1
1,065,724	+		GFF1060	0.61	-1.2
1,065,724	+		GFF1060	0.61	+0.4
1,065,732	-		GFF1060	0.62	-1.1
1,065,732	-		GFF1060	0.62	+0.5
1,065,732	-		GFF1060	0.62	+0.9
1,065,732	-		GFF1060	0.62	+1.0
1,065,732	-		GFF1060	0.62	-2.0
1,065,732	-		GFF1060	0.62	+0.0
1,065,732	-		GFF1060	0.62	+0.6
1,065,732	-		GFF1060	0.62	-0.8
1,065,732	-		GFF1060	0.62	+0.3
1,065,734	+		GFF1060	0.62	+1.1
1,065,734	-		GFF1060	0.62	+0.1
1,065,737	-		GFF1060	0.63	-0.4
1,065,740	+		GFF1060	0.63	-1.6
1,065,742	-		GFF1060	0.63	-0.6
1,065,775	-		GFF1060	0.67	+0.8
1,065,798	-		GFF1060	0.69	+0.8
1,065,800	+		GFF1060	0.70	-0.8
1,065,800	+		GFF1060	0.70	+0.2
1,065,808	+		GFF1060	0.70	+0.8
1,065,808	+		GFF1060	0.70	+1.1
1,065,808	-		GFF1060	0.70	-0.2
1,065,808	-		GFF1060	0.70	+0.2
1,065,808	-		GFF1060	0.70	-2.5
1,065,808	-		GFF1060	0.70	-1.6
1,065,837	+		GFF1060	0.74	+1.3
1,065,845	+		GFF1060	0.74	-0.3
1,065,845	+		GFF1060	0.74	+0.7
1,065,850	+		GFF1060	0.75	+0.1
1,065,850	+		GFF1060	0.75	-1.0
1,065,853	-		GFF1060	0.75	-0.2
1,065,853	-		GFF1060	0.75	-0.5
1,065,860	+		GFF1060	0.76	+0.1
1,065,860	+		GFF1060	0.76	-0.4
1,065,860	+		GFF1060	0.76	-0.5
1,065,860	-		GFF1060	0.76	-0.6
1,065,868	-		GFF1060	0.77	-0.8
1,065,881	+		GFF1060	0.78	-0.9
1,065,881	-		GFF1060	0.78	+0.3
1,065,889	-		GFF1060	0.79	+0.6
1,065,894	-		GFF1060	0.80	+0.5
1,065,900	-		GFF1060	0.80	+0.6
1,065,902	+		GFF1060	0.81	+1.5
1,065,902	+		GFF1060	0.81	+0.0
1,065,906	-		GFF1060	0.81	-0.5
1,065,906	-		GFF1060	0.81	-0.1
1,065,908	+		GFF1060	0.81	-2.5
1,065,908	+		GFF1060	0.81	+1.3
1,065,908	+		GFF1060	0.81	+0.6
1,065,908	+		GFF1060	0.81	-0.5
1,065,910	-		GFF1060	0.82	+0.3
1,065,916	-		GFF1060	0.82	-1.5
1,065,916	-		GFF1060	0.82	-0.3
1,065,927	-		GFF1060	0.83	-1.1
1,065,929	+		GFF1060	0.84	-0.5
1,065,930	+		GFF1060	0.84	-0.6
1,065,937	-		GFF1060	0.84	+0.3
1,065,937	-		GFF1060	0.84	-2.3
1,065,938	-		GFF1060	0.85	+0.2
1,065,938	-		GFF1060	0.85	+0.4
1,065,938	-		GFF1060	0.85	-1.7
1,065,938	-		GFF1060	0.85	-1.5
1,065,966	-		GFF1060	0.88	+0.5
1,065,966	-		GFF1060	0.88	+0.8
1,065,968	+		GFF1060	0.88	+0.5
1,065,968	+		GFF1060	0.88	+0.2
1,065,970	+		GFF1060	0.88	-0.3
1,065,970	+		GFF1060	0.88	-0.5
1,065,970	+		GFF1060	0.88	+0.1
1,065,976	-		GFF1060	0.89	+1.4
1,065,976	-		GFF1060	0.89	+0.1
1,065,978	-		GFF1060	0.89	-0.2
1,065,978	-		GFF1060	0.89	-1.5
1,065,978	-		GFF1060	0.89	+0.9
1,065,978	-		GFF1060	0.89	+0.9
1,065,978	-		GFF1060	0.89	-1.1
1,065,978	-		GFF1060	0.89	-0.7
1,065,978	-		GFF1060	0.89	+0.9
1,065,978	-		GFF1060	0.89	-1.9
1,066,023	-				+1.2
1,066,023	-				+0.5
1,066,028	-				-1.3
1,066,039	+				+0.1
1,066,047	-				-0.8
1,066,050	+				-2.0
1,066,050	+				-0.2
1,066,064	+				+0.9
1,066,069	+				+0.0
1,066,069	+				-0.5
1,066,069	+				-0.2
1,066,072	-				+1.1
1,066,072	-				+0.0
1,066,072	-				-1.0
1,066,072	-				-0.5
1,066,077	-				-0.5
1,066,082	+				+1.0
1,066,092	-				-0.1
1,066,119	+				-0.6
1,066,125	+				+0.4
1,066,129	+				+0.7
1,066,129	+				+0.4
1,066,137	-				+0.2
1,066,137	-				-0.4
1,066,137	-				-0.5
1,066,137	-				-0.4
1,066,170	+				-1.8
1,066,170	+				-1.2
1,066,170	+				-0.5
1,066,173	-		GFF1061	0.10	+0.1
1,066,173	-		GFF1061	0.10	-0.5
1,066,173	-		GFF1061	0.10	-3.0
1,066,178	+		GFF1061	0.10	+0.3
1,066,180	+		GFF1061	0.11	-0.6
1,066,180	+		GFF1061	0.11	+1.1
1,066,188	-		GFF1061	0.11	-0.5
1,066,192	+		GFF1061	0.12	+0.1
1,066,192	+		GFF1061	0.12	-0.1
1,066,192	+		GFF1061	0.12	-0.2
1,066,192	+		GFF1061	0.12	+0.8
1,066,192	+		GFF1061	0.12	+0.2
1,066,200	-		GFF1061	0.13	+1.1
1,066,200	-		GFF1061	0.13	+1.7
1,066,200	-		GFF1061	0.13	+0.5
1,066,200	-		GFF1061	0.13	-0.5
1,066,200	-		GFF1061	0.13	+0.0
1,066,200	-		GFF1061	0.13	-1.0
1,066,200	-		GFF1061	0.13	-0.8
1,066,200	-		GFF1061	0.13	+0.0
1,066,200	-		GFF1061	0.13	-0.5
1,066,201	+		GFF1061	0.13	+0.1
1,066,203	+		GFF1061	0.13	-2.1
1,066,209	-		GFF1061	0.13	-0.6
1,066,209	-		GFF1061	0.13	-1.1
1,066,209	-		GFF1061	0.13	+0.1
1,066,214	-		GFF1061	0.14	-1.3
1,066,224	+		GFF1061	0.15	+1.0
1,066,248	-		GFF1061	0.17	-1.1
1,066,248	-		GFF1061	0.17	-0.6
1,066,253	-		GFF1061	0.17	-1.0
1,066,271	+		GFF1061	0.19	-1.6
1,066,289	-		GFF1061	0.21	+0.5
1,066,291	+		GFF1061	0.21	+0.4
1,066,294	-		GFF1061	0.21	+0.0
1,066,320	+		GFF1061	0.24	+0.6
1,066,323	-		GFF1061	0.24	-0.3
1,066,325	+		GFF1061	0.24	-0.3
1,066,325	+		GFF1061	0.24	-0.5
1,066,325	+		GFF1061	0.24	-0.6
1,066,325	+		GFF1061	0.24	-0.5
1,066,325	+		GFF1061	0.24	-0.7
1,066,325	+		GFF1061	0.24	+0.2
1,066,325	+		GFF1061	0.24	-0.2
1,066,325	+		GFF1061	0.24	-1.0
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1,066,897	-		GFF1061	0.78	-1.2
1,066,897	-		GFF1061	0.78	-1.7
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1,067,001	+		GFF1061	0.87	-2.3
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1,067,049	-				-0.4
1,067,062	-				+1.1
1,067,062	-				+0.4
1,067,062	-				-2.5
1,067,062	-				-1.0
1,067,072	+				-0.3
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