Strain Fitness in Sphingobium sp. HT1-2 around GFF1040

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,043,245	-		GFF1039	0.62	-0.3
1,043,250	+		GFF1039	0.62	+0.4
1,043,250	+		GFF1039	0.62	-0.1
1,043,268	-		GFF1039	0.63	-1.5
1,043,283	-		GFF1039	0.63	-0.3
1,043,335	+		GFF1039	0.66	-0.1
1,043,345	+		GFF1039	0.66	-1.3
1,043,353	-		GFF1039	0.66	-1.1
1,043,366	+		GFF1039	0.67	+0.4
1,043,366	+		GFF1039	0.67	-0.9
1,043,366	+		GFF1039	0.67	-1.0
1,043,366	+		GFF1039	0.67	-0.7
1,043,366	+		GFF1039	0.67	-0.1
1,043,369	-		GFF1039	0.67	+0.9
1,043,374	-		GFF1039	0.67	+0.3
1,043,389	+		GFF1039	0.68	-1.6
1,043,415	+		GFF1039	0.69	+0.0
1,043,415	+		GFF1039	0.69	-0.9
1,043,415	+		GFF1039	0.69	-2.2
1,043,415	+		GFF1039	0.69	-0.2
1,043,423	-		GFF1039	0.69	-1.6
1,043,423	-		GFF1039	0.69	-0.6
1,043,423	-		GFF1039	0.69	+1.1
1,043,423	-		GFF1039	0.69	-1.8
1,043,423	-		GFF1039	0.69	-1.9
1,043,423	-		GFF1039	0.69	-2.8
1,043,423	-		GFF1039	0.69	-0.9
1,043,424	+		GFF1039	0.69	-1.6
1,043,424	+		GFF1039	0.69	-0.8
1,043,424	+		GFF1039	0.69	+0.6
1,043,424	+		GFF1039	0.69	+0.0
1,043,432	-		GFF1039	0.69	-1.4
1,043,432	-		GFF1039	0.69	+0.0
1,043,432	-		GFF1039	0.69	+0.8
1,043,444	-		GFF1039	0.70	+0.9
1,043,479	+		GFF1039	0.71	+0.4
1,043,497	-		GFF1039	0.72	+0.1
1,043,527	+		GFF1039	0.73	+0.2
1,043,562	+		GFF1039	0.74	-0.3
1,043,562	+		GFF1039	0.74	+0.5
1,043,567	+		GFF1039	0.74	-0.3
1,043,570	-		GFF1039	0.75	-1.6
1,043,575	-		GFF1039	0.75	+0.2
1,043,575	-		GFF1039	0.75	-0.7
1,043,575	-		GFF1039	0.75	-1.6
1,043,575	-		GFF1039	0.75	+0.5
1,043,580	-		GFF1039	0.75	+0.5
1,043,593	-		GFF1039	0.76	-0.1
1,043,595	+		GFF1039	0.76	-0.5
1,043,595	+		GFF1039	0.76	-0.8
1,043,595	+		GFF1039	0.76	-1.9
1,043,595	+		GFF1039	0.76	+0.2
1,043,603	-		GFF1039	0.76	-0.9
1,043,603	-		GFF1039	0.76	-0.1
1,043,603	-		GFF1039	0.76	-1.0
1,043,603	-		GFF1039	0.76	-0.6
1,043,603	-		GFF1039	0.76	+0.4
1,043,603	-		GFF1039	0.76	-3.2
1,043,603	-		GFF1039	0.76	-1.8
1,043,613	-		GFF1039	0.76	-1.5
1,043,628	+		GFF1039	0.77	-0.4
1,043,633	+		GFF1039	0.77	-1.9
1,043,633	+		GFF1039	0.77	+0.9
1,043,635	+		GFF1039	0.77	-0.2
1,043,636	-		GFF1039	0.77	+1.8
1,043,636	-		GFF1039	0.77	-1.2
1,043,638	+		GFF1039	0.77	-0.5
1,043,641	-		GFF1039	0.77	-1.9
1,043,641	-		GFF1039	0.77	-0.2
1,043,641	-		GFF1039	0.77	-1.2
1,043,643	+		GFF1039	0.77	+1.3
1,043,643	+		GFF1039	0.77	-0.2
1,043,651	-		GFF1039	0.78	-0.5
1,043,651	-		GFF1039	0.78	+0.4
1,043,651	-		GFF1039	0.78	-1.5
1,043,656	-		GFF1039	0.78	-1.0
1,043,657	+		GFF1039	0.78	+0.2
1,043,672	-		GFF1039	0.79	-3.1
1,043,703	+		GFF1039	0.80	+0.6
1,043,713	-		GFF1039	0.80	+1.4
1,043,751	+		GFF1039	0.82	-0.7
1,043,756	+		GFF1039	0.82	-0.1
1,043,756	+		GFF1039	0.82	-1.7
1,043,756	+		GFF1039	0.82	-0.3
1,043,756	+		GFF1039	0.82	-0.4
1,043,756	+		GFF1039	0.82	+1.6
1,043,759	-		GFF1039	0.82	-1.6
1,043,759	-		GFF1039	0.82	-0.6
1,043,759	-		GFF1039	0.82	-0.2
1,043,759	-		GFF1039	0.82	-0.2
1,043,759	-		GFF1039	0.82	+0.1
1,043,764	-		GFF1039	0.82	-0.3
1,043,764	-		GFF1039	0.82	-0.1
1,043,764	-		GFF1039	0.82	-1.0
1,043,764	-		GFF1039	0.82	-0.5
1,043,764	-		GFF1039	0.82	-0.8
1,043,797	+		GFF1039	0.83	-0.4
1,043,797	+		GFF1039	0.83	+0.8
1,043,797	+		GFF1039	0.83	-0.6
1,043,802	+		GFF1039	0.84	+0.5
1,043,802	+		GFF1039	0.84	-1.5
1,043,805	-		GFF1039	0.84	-0.9
1,043,810	-		GFF1039	0.84	+0.6
1,043,810	-		GFF1039	0.84	-0.8
1,043,812	+		GFF1039	0.84	+0.6
1,043,824	-		GFF1039	0.84	+0.8
1,043,831	+		GFF1039	0.85	-1.0
1,043,831	+		GFF1039	0.85	-1.0
1,043,831	+		GFF1039	0.85	+0.3
1,043,831	+		GFF1039	0.85	+0.0
1,043,839	-		GFF1039	0.85	-0.5
1,043,839	-		GFF1039	0.85	+1.1
1,043,847	+		GFF1039	0.85	+0.3
1,043,856	+		GFF1039	0.86	+1.8
1,043,856	+		GFF1039	0.86	-1.3
1,043,856	+		GFF1039	0.86	-0.5
1,043,859	-		GFF1039	0.86	+0.1
1,043,866	+		GFF1039	0.86	-0.6
1,043,922	-		GFF1039	0.88	+0.3
1,043,927	-		GFF1039	0.88	+0.1
1,043,931	-		GFF1039	0.89	-0.6
1,043,961	-		GFF1039	0.90	+1.7
1,043,975	+				+1.7
1,043,979	-				-0.5
1,043,981	+				+0.0
1,044,011	+				-2.1
1,044,011	+				+0.9
1,044,019	-				+1.2
1,044,019	-				-0.3
1,044,019	-				+0.0
1,044,021	+				-1.5
1,044,021	+				-0.2
1,044,026	+				+0.1
1,044,026	-				-1.9
1,044,029	-				+0.6
1,044,029	-				+1.3
1,044,030	-				+0.1
1,044,032	+				+0.7
1,044,040	-				-1.2
1,044,056	+				-0.4
1,044,060	-				+0.1
1,044,060	-				-1.2
1,044,064	-				-0.1
1,044,065	-				-2.9
1,044,067	+				-1.5
1,044,067	+				+0.0
1,044,067	+				-0.3
1,044,070	-				+0.2
1,044,075	-				-0.6
1,044,075	-				-0.1
1,044,077	+				+1.1
1,044,077	+				+0.1
1,044,077	+				-1.9
1,044,077	+				-1.1
1,044,077	+				-1.7
1,044,077	+				+1.3
1,044,078	-				-0.7
1,044,085	-				-1.5
1,044,085	-				-0.1
1,044,085	-				-2.1
1,044,085	-				-1.4
1,044,085	-				+0.0
1,044,085	-				-0.1
1,044,093	+				-0.3
1,044,108	+				+0.3
1,044,108	+				+1.5
1,044,108	+				-0.7
1,044,116	-				-2.0
1,044,116	-				-1.1
1,044,120	-				+1.5
1,044,139	+				+0.9
1,044,139	+				+0.5
1,044,139	+				+1.0
1,044,139	+				-1.0
1,044,139	+				-0.2
1,044,142	-				-0.6
1,044,147	-				+0.4
1,044,147	-				-0.9
1,044,147	-				-1.0
1,044,147	-				-0.8
1,044,147	-				+0.1
1,044,154	+				+0.7
1,044,154	+				+0.3
1,044,159	+				-0.7
1,044,167	-				-0.5
1,044,169	+				-0.1
1,044,169	+				+1.0
1,044,177	-				+0.5
1,044,177	-				-0.5
1,044,177	-				-0.9
1,044,181	+				+0.5
1,044,181	+				+0.1
1,044,181	+				-1.7
1,044,181	+				+0.6
1,044,189	-				-1.0
1,044,204	+				+0.1
1,044,212	-				+0.2
1,044,222	-				+0.0
1,044,233	-				-0.4
1,044,258	-				+0.2
1,044,258	-				+0.5
1,044,258	-				-0.4
1,044,264	+				+0.7
1,044,282	+				+1.8
1,044,282	-				-0.3
1,044,299	+		GFF1040	0.11	+0.7
1,044,307	-		GFF1040	0.12	+0.6
1,044,318	-		GFF1040	0.13	+0.6
1,044,318	-		GFF1040	0.13	+1.0
1,044,319	+		GFF1040	0.13	-1.0
1,044,319	+		GFF1040	0.13	-0.5
1,044,327	-		GFF1040	0.14	-1.1
1,044,340	-		GFF1040	0.16	-0.1
1,044,356	+		GFF1040	0.18	+0.1
1,044,357	-		GFF1040	0.19	-0.2
1,044,364	-		GFF1040	0.20	-0.6
1,044,386	-		GFF1040	0.23	-0.1
1,044,439	-		GFF1040	0.30	-0.6
1,044,444	-		GFF1040	0.30	-0.5
1,044,451	+		GFF1040	0.31	-0.9
1,044,451	+		GFF1040	0.31	-0.3
1,044,452	-		GFF1040	0.32	-1.7
1,044,459	-		GFF1040	0.33	-2.5
1,044,459	-		GFF1040	0.33	-0.1
1,044,461	+		GFF1040	0.33	-0.4
1,044,461	+		GFF1040	0.33	-0.9
1,044,461	+		GFF1040	0.33	+1.3
1,044,466	+		GFF1040	0.33	+0.5
1,044,466	+		GFF1040	0.33	+0.0
1,044,469	-		GFF1040	0.34	-0.6
1,044,469	-		GFF1040	0.34	+0.0
1,044,470	-		GFF1040	0.34	-0.2
1,044,470	-		GFF1040	0.34	-0.5
1,044,474	-		GFF1040	0.35	-0.6
1,044,474	-		GFF1040	0.35	-0.5
1,044,498	+		GFF1040	0.38	-0.3
1,044,505	-		GFF1040	0.39	+0.3
1,044,515	+		GFF1040	0.40	+0.6
1,044,539	+		GFF1040	0.43	-1.2
1,044,539	+		GFF1040	0.43	+0.1
1,044,558	+		GFF1040	0.46	-0.6
1,044,563	+		GFF1040	0.47	+0.0
1,044,563	+		GFF1040	0.47	-0.6
1,044,566	-		GFF1040	0.47	+1.7
1,044,566	-		GFF1040	0.47	-1.6
1,044,571	-		GFF1040	0.48	+0.2
1,044,580	+		GFF1040	0.49	+0.3
1,044,583	-		GFF1040	0.49	+0.1
1,044,605	+		GFF1040	0.52	+0.6
1,044,616	+		GFF1040	0.54	-2.2
1,044,616	+		GFF1040	0.54	-0.5
1,044,669	+		GFF1040	0.61	-0.5
1,044,707	-		GFF1040	0.66	+0.1
1,044,735	+		GFF1040	0.70	-1.4
1,044,744	+		GFF1040	0.71	+0.2
1,044,744	+		GFF1040	0.71	+0.0
1,044,744	+		GFF1040	0.71	+0.2
1,044,744	+		GFF1040	0.71	-0.5
1,044,745	-		GFF1040	0.72	-0.9
1,044,752	-		GFF1040	0.73	+1.1
1,044,752	-		GFF1040	0.73	+0.5
1,044,752	-		GFF1040	0.73	-1.1
1,044,754	+		GFF1040	0.73	-0.3
1,044,754	+		GFF1040	0.73	-0.8
1,044,754	+		GFF1040	0.73	-1.7
1,044,762	-		GFF1040	0.74	-0.8
1,044,762	-		GFF1040	0.74	-0.3
1,044,793	+		GFF1040	0.78	+0.1
1,044,801	-		GFF1040	0.79	-2.5
1,044,833	+		GFF1040	0.84	+0.1
1,044,833	+		GFF1040	0.84	+0.3
1,044,834	-		GFF1040	0.84	+0.2
1,044,834	-		GFF1040	0.84	-2.0
1,044,835	-		GFF1040	0.84	-0.8
1,044,848	+		GFF1040	0.86	-0.7
1,044,848	+		GFF1040	0.86	-0.6
1,044,848	+		GFF1040	0.86	+0.1
1,044,851	-		GFF1040	0.86	-0.3
1,044,853	+		GFF1040	0.86	-0.4
1,044,861	-		GFF1040	0.87	+0.9
1,044,874	-		GFF1040	0.89	-0.2
1,044,874	-		GFF1040	0.89	+0.1
1,044,876	+		GFF1040	0.89	-2.0
1,044,876	+		GFF1040	0.89	+1.4
1,044,908	+				+1.9
1,044,911	-				+1.7
1,044,916	-				-2.3
1,044,934	-				+0.7
1,044,946	+				-1.0
1,044,947	-				-0.9
1,044,949	-				-0.3
1,044,949	-				+1.2
1,044,956	-				-0.2
1,044,979	+				-0.4
1,044,979	+				+0.5
1,044,983	-				+0.1
1,044,986	-				+0.5
1,044,990	+				-1.0
1,045,016	+				-0.1
1,045,026	+				-1.7
1,045,031	+				+0.5
1,045,032	-				-0.6
1,045,034	+				-0.1
1,045,034	+				-0.3
1,045,034	+				-1.6
1,045,034	+				+0.0
1,045,034	+				-0.2
1,045,039	+				+0.5
1,045,039	+				-0.1
1,045,042	-				-2.6
1,045,052	-				+0.1
1,045,060	-				-3.0
1,045,113	-				-1.1
1,045,128	+				-0.6
1,045,136	+				+0.3
1,045,136	-				-2.8
1,045,141	-				-0.6
1,045,141	-				+0.5
1,045,149	+				-0.4
1,045,149	+				+1.5
1,045,157	-				-1.1
1,045,175	+				+0.9
1,045,183	+				+0.9
1,045,200	-				-1.3
1,045,211	+				+0.5
1,045,212	-				+0.3
1,045,217	+				-0.1
1,045,230	-				+0.8
1,045,238	-				+0.5
1,045,248	+				-0.5
1,045,253	+				-0.5
1,045,274	+				-0.7
1,045,274	+				-0.9
1,045,274	+				-2.2
1,045,275	-				-1.7
1,045,280	+				-0.5
1,045,282	-				-0.4
1,045,287	-				-1.0
1,045,288	+				+1.0
1,045,295	+				-0.7
1,045,295	+				-0.8
1,045,296	-				+1.1
1,045,303	-				-1.5
1,045,310	+				-2.1
1,045,311	+				+1.2
1,045,319	-				+0.8
1,045,324	-				-2.1
1,045,342	-				+0.8
1,045,347	-				+0.1
1,045,347	-				-0.3
1,045,347	-				+0.1
1,045,348	-				-0.3
1,045,348	-				-0.4
1,045,373	+		GFF1041	0.10	-0.6
1,045,381	-		GFF1041	0.10	-0.4
1,045,381	-		GFF1041	0.10	-1.6
1,045,386	-		GFF1041	0.11	+0.1
1,045,393	+		GFF1041	0.11	-0.5
1,045,393	+		GFF1041	0.11	-1.6
1,045,393	+		GFF1041	0.11	+0.5
1,045,393	+		GFF1041	0.11	+0.1
1,045,393	+		GFF1041	0.11	-1.2
1,045,393	+		GFF1041	0.11	+0.8
1,045,401	-		GFF1041	0.11	-0.1
1,045,401	-		GFF1041	0.11	+0.6
1,045,401	-		GFF1041	0.11	-0.4
1,045,401	-		GFF1041	0.11	+0.1
1,045,406	-		GFF1041	0.11	-0.1
1,045,411	+		GFF1041	0.11	+0.1
1,045,438	+		GFF1041	0.12	+1.0
1,045,438	+		GFF1041	0.12	+0.5
1,045,441	-		GFF1041	0.12	+0.0
1,045,444	-		GFF1041	0.13	+1.3
1,045,444	-		GFF1041	0.13	-0.9
1,045,446	-		GFF1041	0.13	-0.3
1,045,446	-		GFF1041	0.13	-2.6
1,045,457	-		GFF1041	0.13	+0.2
1,045,458	-		GFF1041	0.13	+0.7
1,045,467	+		GFF1041	0.13	+0.5
1,045,475	-		GFF1041	0.14	-0.1
1,045,480	-		GFF1041	0.14	-1.1
1,045,495	+		GFF1041	0.14	+1.4
1,045,495	+		GFF1041	0.14	-0.1
1,045,495	+		GFF1041	0.14	+0.9
1,045,503	-		GFF1041	0.15	-0.1
1,045,503	-		GFF1041	0.15	+0.3
1,045,523	+		GFF1041	0.15	+0.7
1,045,533	-		GFF1041	0.16	-0.2
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