Strain Fitness in Sphingobium sp. HT1-2 around GFF1037

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,038,708	-		GFF1036	0.66	-0.4
1,038,708	-		GFF1036	0.66	+1.4
1,038,713	-		GFF1036	0.66	-0.8
1,038,725	+		GFF1036	0.66	+0.3
1,038,727	+		GFF1036	0.66	+0.4
1,038,727	+		GFF1036	0.66	-0.4
1,038,735	-		GFF1036	0.67	+0.6
1,038,735	-		GFF1036	0.67	+0.3
1,038,742	-		GFF1036	0.67	-0.8
1,038,744	-		GFF1036	0.67	-0.4
1,038,744	-		GFF1036	0.67	-1.8
1,038,750	+		GFF1036	0.67	+0.1
1,038,755	+		GFF1036	0.67	-1.3
1,038,755	+		GFF1036	0.67	-0.0
1,038,756	+		GFF1036	0.67	+0.9
1,038,756	+		GFF1036	0.67	-0.2
1,038,757	+		GFF1036	0.67	-1.9
1,038,758	-		GFF1036	0.67	-0.3
1,038,758	-		GFF1036	0.67	-0.3
1,038,764	-		GFF1036	0.68	-1.8
1,038,764	-		GFF1036	0.68	-0.2
1,038,773	-		GFF1036	0.68	+0.3
1,038,773	-		GFF1036	0.68	-0.4
1,038,775	+		GFF1036	0.68	-1.3
1,038,780	+		GFF1036	0.68	-1.7
1,038,786	+		GFF1036	0.68	-0.6
1,038,797	+		GFF1036	0.69	-1.5
1,038,854	+		GFF1036	0.71	-0.1
1,038,854	+		GFF1036	0.71	-0.6
1,038,854	+		GFF1036	0.71	-1.5
1,038,854	+		GFF1036	0.71	+0.8
1,038,862	-		GFF1036	0.71	-0.2
1,038,865	+		GFF1036	0.71	+0.5
1,038,879	+		GFF1036	0.72	-0.7
1,038,881	-		GFF1036	0.72	-2.2
1,038,908	-		GFF1036	0.73	-2.6
1,038,908	-		GFF1036	0.73	+0.4
1,038,962	-		GFF1036	0.75	-0.7
1,038,968	+		GFF1036	0.75	-1.5
1,038,980	-		GFF1036	0.75	-0.4
1,038,987	+		GFF1036	0.75	-0.9
1,038,996	-		GFF1036	0.76	+0.6
1,038,996	-		GFF1036	0.76	+0.5
1,039,004	+		GFF1036	0.76	+0.6
1,039,004	+		GFF1036	0.76	+0.3
1,039,007	-		GFF1036	0.76	-0.4
1,039,012	-		GFF1036	0.76	-2.3
1,039,012	-		GFF1036	0.76	+0.3
1,039,012	-		GFF1036	0.76	-0.2
1,039,012	-		GFF1036	0.76	+0.3
1,039,012	-		GFF1036	0.76	+1.2
1,039,012	-		GFF1036	0.76	-2.6
1,039,012	-		GFF1036	0.76	+1.0
1,039,012	-		GFF1036	0.76	+1.1
1,039,012	-		GFF1036	0.76	+0.0
1,039,012	-		GFF1036	0.76	-0.2
1,039,012	-		GFF1036	0.76	-0.2
1,039,012	-		GFF1036	0.76	-0.9
1,039,012	-		GFF1036	0.76	-1.0
1,039,013	-		GFF1036	0.76	-0.0
1,039,015	+		GFF1036	0.76	+0.2
1,039,015	+		GFF1036	0.76	+0.5
1,039,015	+		GFF1036	0.76	-2.3
1,039,015	+		GFF1036	0.76	+0.5
1,039,023	-		GFF1036	0.77	-0.4
1,039,023	-		GFF1036	0.77	-1.1
1,039,023	-		GFF1036	0.77	+0.6
1,039,023	-		GFF1036	0.77	+0.4
1,039,032	+		GFF1036	0.77	+0.4
1,039,032	+		GFF1036	0.77	+1.1
1,039,034	-		GFF1036	0.77	+0.7
1,039,034	-		GFF1036	0.77	+0.2
1,039,050	-		GFF1036	0.78	-2.4
1,039,081	+		GFF1036	0.79	+0.9
1,039,121	-		GFF1036	0.80	-0.0
1,039,121	-		GFF1036	0.80	-0.5
1,039,126	-		GFF1036	0.80	-0.7
1,039,130	+		GFF1036	0.80	-0.5
1,039,136	-		GFF1036	0.81	+0.5
1,039,148	+		GFF1036	0.81	+0.9
1,039,156	-		GFF1036	0.81	+0.3
1,039,156	-		GFF1036	0.81	-1.0
1,039,175	-		GFF1036	0.82	-0.9
1,039,190	+		GFF1036	0.82	+0.9
1,039,195	+		GFF1036	0.83	-2.0
1,039,198	-		GFF1036	0.83	+0.1
1,039,208	+		GFF1036	0.83	-1.2
1,039,216	-		GFF1036	0.83	-1.4
1,039,216	-		GFF1036	0.83	-1.3
1,039,218	-		GFF1036	0.83	-0.1
1,039,267	+		GFF1036	0.85	-0.4
1,039,267	+		GFF1036	0.85	-0.5
1,039,267	+		GFF1036	0.85	-1.5
1,039,268	+		GFF1036	0.85	-1.6
1,039,275	-		GFF1036	0.85	+0.4
1,039,275	-		GFF1036	0.85	-2.3
1,039,275	-		GFF1036	0.85	-1.5
1,039,275	-		GFF1036	0.85	-0.5
1,039,285	-		GFF1036	0.86	-0.2
1,039,296	+		GFF1036	0.86	-0.3
1,039,296	+		GFF1036	0.86	+0.9
1,039,296	+		GFF1036	0.86	-0.2
1,039,387	+		GFF1036	0.89	-1.1
1,039,395	-		GFF1036	0.90	-0.3
1,039,395	-		GFF1036	0.90	-2.0
1,039,402	-		GFF1036	0.90	-0.7
1,039,438	-				-0.0
1,039,449	+				-0.1
1,039,449	+				-1.5
1,039,453	+				+0.1
1,039,459	+				-0.6
1,039,461	-				-0.6
1,039,461	-				+1.4
1,039,467	-				+0.5
1,039,475	+				-0.1
1,039,498	+				+0.3
1,039,501	-				-0.5
1,039,506	+				+1.0
1,039,506	+				+0.9
1,039,514	+				-0.3
1,039,514	+				-1.7
1,039,514	+				+1.2
1,039,514	+				+0.5
1,039,514	+				-1.6
1,039,514	-				+0.5
1,039,514	-				-0.5
1,039,522	-				-0.7
1,039,522	-				+0.9
1,039,522	-				-1.0
1,039,522	-				-2.2
1,039,522	-				-0.9
1,039,549	-				-1.0
1,039,549	-				+0.1
1,039,561	-				+0.1
1,039,562	+				-0.2
1,039,564	+				+0.3
1,039,570	-				-0.8
1,039,570	-				+0.2
1,039,570	-				-2.5
1,039,597	+				-0.8
1,039,605	-				-0.1
1,039,605	-				+0.5
1,039,627	-				-0.5
1,039,627	-				-0.8
1,039,627	-				+1.3
1,039,640	+				+0.1
1,039,640	+				-0.2
1,039,648	-				-0.8
1,039,648	-				-0.7
1,039,648	-				+0.3
1,039,650	+				+0.6
1,039,657	+				-1.5
1,039,684	+				+0.4
1,039,699	+				-0.7
1,039,701	-				+0.3
1,039,702	+				-0.1
1,039,707	+				+0.3
1,039,710	+				-2.3
1,039,710	-				-1.5
1,039,715	+				+1.6
1,039,718	-		GFF1037	0.10	+0.4
1,039,760	+		GFF1037	0.41	-1.3
1,039,760	+		GFF1037	0.41	-0.5
1,039,760	+		GFF1037	0.41	+0.7
1,039,760	+		GFF1037	0.41	-0.5
1,039,760	+		GFF1037	0.41	-1.7
1,039,760	+		GFF1037	0.41	-1.1
1,039,760	+		GFF1037	0.41	-0.9
1,039,760	+		GFF1037	0.41	+0.1
1,039,760	+		GFF1037	0.41	+0.2
1,039,760	+		GFF1037	0.41	+0.9
1,039,760	+		GFF1037	0.41	-0.2
1,039,760	+		GFF1037	0.41	-0.8
1,039,760	+		GFF1037	0.41	-1.2
1,039,760	+		GFF1037	0.41	+0.4
1,039,760	+		GFF1037	0.41	-0.1
1,039,760	+		GFF1037	0.41	-1.0
1,039,760	+		GFF1037	0.41	+0.2
1,039,766	-		GFF1037	0.46	+1.4
1,039,768	-		GFF1037	0.47	+1.0
1,039,768	-		GFF1037	0.47	+0.5
1,039,768	-		GFF1037	0.47	-0.0
1,039,768	-		GFF1037	0.47	-0.3
1,039,768	-		GFF1037	0.47	-1.5
1,039,768	-		GFF1037	0.47	-1.2
1,039,768	-		GFF1037	0.47	+0.2
1,039,768	-		GFF1037	0.47	-0.4
1,039,768	-		GFF1037	0.47	+0.2
1,039,768	-		GFF1037	0.47	-0.9
1,039,768	-		GFF1037	0.47	-1.0
1,039,768	-		GFF1037	0.47	-0.6
1,039,768	-		GFF1037	0.47	+0.3
1,039,768	-		GFF1037	0.47	-1.1
1,039,768	-		GFF1037	0.47	+0.1
1,039,768	-		GFF1037	0.47	-0.0
1,039,768	-		GFF1037	0.47	+0.8
1,039,781	+		GFF1037	0.57	+0.2
1,039,781	+		GFF1037	0.57	+0.4
1,039,805	-		GFF1037	0.75	-0.3
1,039,809	+		GFF1037	0.78	+1.3
1,039,813	-		GFF1037	0.81	-1.4
1,039,814	+		GFF1037	0.81	+0.6
1,039,817	-		GFF1037	0.84	+2.1
1,039,817	-		GFF1037	0.84	+0.6
1,039,819	+		GFF1037	0.85	-0.4
1,039,846	-				-1.2
1,039,852	+				+0.3
1,039,870	+				-1.2
1,039,878	-				+0.0
1,039,888	+				-1.8
1,039,916	+				+0.1
1,039,916	+				-0.2
1,039,916	+				-0.3
1,039,916	+				-0.5
1,039,924	-				-0.7
1,039,924	-				+0.2
1,039,924	-				-0.7
1,039,924	-				+0.4
1,039,924	-				+0.2
1,039,929	-				-1.4
1,039,936	-				+0.8
1,039,942	+				+0.5
1,039,942	+				-0.7
1,039,942	+				-1.6
1,039,942	+				-0.5
1,039,942	+				-0.9
1,039,942	+				-0.4
1,039,942	+				-0.7
1,039,942	+				-0.8
1,039,942	+				-2.5
1,039,942	+				+1.1
1,039,942	+				-0.3
1,039,942	+				+1.0
1,039,950	-				-0.1
1,039,950	-				-0.2
1,039,950	-				+0.1
1,039,950	-				-0.4
1,039,950	-				+0.1
1,039,950	-				+0.1
1,039,950	-				-0.0
1,039,950	-				-2.6
1,039,950	-				+0.7
1,039,950	-				-0.6
1,039,950	-				-0.6
1,039,950	-				-0.6
1,039,950	-				-0.6
1,039,954	+				+0.2
1,039,954	+				+0.1
1,039,955	-				-0.0
1,039,963	+				-0.7
1,039,963	+				-0.0
1,039,971	+				-2.1
1,039,971	-				-1.6
1,039,972	+				-0.2
1,039,972	+				-1.7
1,039,980	-				+1.1
1,039,981	-				-0.2
1,040,004	-				-1.4
1,040,038	+				-1.1
1,040,038	+				-0.2
1,040,045	-				+1.5
1,040,094	+		GFF1038	0.13	-0.7
1,040,109	+		GFF1038	0.14	-0.0
1,040,116	-		GFF1038	0.14	-1.0
1,040,136	-		GFF1038	0.15	-0.4
1,040,143	-		GFF1038	0.16	-0.4
1,040,153	-		GFF1038	0.16	+0.5
1,040,165	-		GFF1038	0.17	-0.5
1,040,229	-		GFF1038	0.21	-0.7
1,040,242	+		GFF1038	0.22	+0.8
1,040,242	+		GFF1038	0.22	-0.1
1,040,250	-		GFF1038	0.22	-1.7
1,040,267	+		GFF1038	0.23	-0.4
1,040,267	+		GFF1038	0.23	+1.6
1,040,271	-		GFF1038	0.23	+0.1
1,040,273	+		GFF1038	0.23	-1.2
1,040,275	-		GFF1038	0.24	+1.2
1,040,290	+		GFF1038	0.24	+1.3
1,040,290	+		GFF1038	0.24	-1.1
1,040,345	+		GFF1038	0.28	-0.0
1,040,349	-		GFF1038	0.28	+0.6
1,040,375	+		GFF1038	0.30	-1.6
1,040,375	+		GFF1038	0.30	-0.5
1,040,383	-		GFF1038	0.30	+0.4
1,040,383	-		GFF1038	0.30	-0.9
1,040,388	+		GFF1038	0.30	-0.6
1,040,393	+		GFF1038	0.31	+0.7
1,040,393	+		GFF1038	0.31	-0.2
1,040,409	-		GFF1038	0.32	-1.6
1,040,420	+		GFF1038	0.32	-0.1
1,040,430	+		GFF1038	0.33	+0.3
1,040,442	+		GFF1038	0.34	+0.1
1,040,442	+		GFF1038	0.34	-0.4
1,040,470	+		GFF1038	0.35	+0.6
1,040,474	+		GFF1038	0.35	+0.4
1,040,484	+		GFF1038	0.36	-2.4
1,040,497	-		GFF1038	0.37	-0.0
1,040,501	-		GFF1038	0.37	-0.0
1,040,501	-		GFF1038	0.37	+0.8
1,040,516	-		GFF1038	0.38	-0.8
1,040,523	-		GFF1038	0.38	+0.6
1,040,530	+		GFF1038	0.39	-0.6
1,040,548	+		GFF1038	0.40	+0.2
1,040,562	+		GFF1038	0.41	-0.7
1,040,562	+		GFF1038	0.41	-0.1
1,040,562	+		GFF1038	0.41	-0.1
1,040,562	+		GFF1038	0.41	-0.8
1,040,564	-		GFF1038	0.41	-0.2
1,040,570	-		GFF1038	0.41	+1.7
1,040,570	-		GFF1038	0.41	+0.7
1,040,575	+		GFF1038	0.42	-0.7
1,040,578	+		GFF1038	0.42	-0.8
1,040,600	+		GFF1038	0.43	+0.3
1,040,615	-		GFF1038	0.44	-0.2
1,040,620	-		GFF1038	0.44	+0.6
1,040,620	-		GFF1038	0.44	-0.6
1,040,622	+		GFF1038	0.44	-0.4
1,040,626	-		GFF1038	0.45	-0.6
1,040,635	+		GFF1038	0.45	-1.8
1,040,640	+		GFF1038	0.45	+0.8
1,040,643	-		GFF1038	0.46	-0.1
1,040,664	-		GFF1038	0.47	-1.1
1,040,666	+		GFF1038	0.47	-1.0
1,040,666	+		GFF1038	0.47	-0.2
1,040,674	-		GFF1038	0.47	-0.4
1,040,705	-		GFF1038	0.49	+0.7
1,040,710	+		GFF1038	0.50	-1.1
1,040,710	+		GFF1038	0.50	-0.5
1,040,710	+		GFF1038	0.50	-0.1
1,040,710	+		GFF1038	0.50	-0.3
1,040,715	+		GFF1038	0.50	-1.5
1,040,717	-		GFF1038	0.50	-1.6
1,040,717	-		GFF1038	0.50	-0.7
1,040,717	-		GFF1038	0.50	+0.2
1,040,718	-		GFF1038	0.50	+1.0
1,040,724	+		GFF1038	0.50	+0.5
1,040,727	+		GFF1038	0.51	-1.8
1,040,727	+		GFF1038	0.51	+0.1
1,040,737	+		GFF1038	0.51	-0.1
1,040,742	+		GFF1038	0.52	-0.6
1,040,745	-		GFF1038	0.52	-1.0
1,040,745	-		GFF1038	0.52	-1.8
1,040,750	-		GFF1038	0.52	+0.1
1,040,777	+		GFF1038	0.54	-2.2
1,040,777	+		GFF1038	0.54	-1.5
1,040,777	+		GFF1038	0.54	-2.9
1,040,778	+		GFF1038	0.54	-0.1
1,040,785	-		GFF1038	0.54	+1.0
1,040,785	-		GFF1038	0.54	-1.9
1,040,785	-		GFF1038	0.54	-2.0
1,040,789	+		GFF1038	0.54	+0.8
1,040,797	+		GFF1038	0.55	+0.3
1,040,797	-		GFF1038	0.55	+0.8
1,040,831	+		GFF1038	0.57	-1.8