Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF995 and GFF996 are separated by 119 nucleotides GFF996 and GFF997 are separated by 162 nucleotides
GFF995 - Tol-Pal system beta propeller repeat protein TolB, at 988,838 to 990,172
GFF995
GFF996 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 990,292 to 990,804
GFF996
GFF997 - regulatory protein, IclR, at 990,967 to 991,743
GFF997
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 989.311 kb on - strand, within GFF995 at 989.324 kb on + strand, within GFF995 at 989.324 kb on + strand, within GFF995 at 989.374 kb on - strand, within GFF995 at 989.404 kb on - strand, within GFF995 at 989.406 kb on - strand, within GFF995 at 989.424 kb on - strand, within GFF995 at 989.478 kb on + strand, within GFF995 at 989.486 kb on - strand, within GFF995 at 989.510 kb on - strand, within GFF995 at 989.533 kb on + strand, within GFF995 at 989.553 kb on + strand, within GFF995 at 989.555 kb on - strand, within GFF995 at 989.563 kb on + strand, within GFF995 at 989.563 kb on + strand, within GFF995 at 989.573 kb on + strand, within GFF995 at 989.581 kb on - strand, within GFF995 at 989.640 kb on + strand, within GFF995 at 989.645 kb on + strand, within GFF995 at 989.653 kb on - strand, within GFF995 at 989.670 kb on + strand, within GFF995 at 989.690 kb on - strand, within GFF995 at 989.699 kb on - strand, within GFF995 at 989.699 kb on - strand, within GFF995 at 989.736 kb on + strand, within GFF995 at 989.829 kb on - strand, within GFF995 at 989.843 kb on - strand, within GFF995 at 989.843 kb on - strand, within GFF995 at 989.856 kb on + strand, within GFF995 at 989.924 kb on - strand, within GFF995 at 989.964 kb on + strand, within GFF995 at 989.977 kb on + strand, within GFF995 at 989.977 kb on + strand, within GFF995 at 990.067 kb on + strand at 990.070 kb on - strand at 990.080 kb on - strand at 990.082 kb on - strand at 990.087 kb on - strand at 990.115 kb on + strand at 990.120 kb on + strand at 990.128 kb on + strand at 990.128 kb on - strand at 990.128 kb on - strand at 990.137 kb on + strand at 990.138 kb on + strand at 990.138 kb on + strand at 990.138 kb on + strand at 990.138 kb on + strand at 990.138 kb on + strand at 990.141 kb on - strand at 990.145 kb on - strand at 990.146 kb on - strand at 990.148 kb on + strand at 990.151 kb on - strand at 990.156 kb on - strand at 990.156 kb on - strand at 990.158 kb on + strand at 990.218 kb on - strand at 990.275 kb on + strand at 990.277 kb on + strand at 990.277 kb on + strand at 990.277 kb on + strand at 990.283 kb on - strand at 990.285 kb on - strand at 990.285 kb on - strand at 990.285 kb on - strand at 990.285 kb on - strand at 990.285 kb on - strand at 990.328 kb on + strand at 990.336 kb on - strand at 990.336 kb on - strand at 990.336 kb on - strand at 990.341 kb on - strand at 990.355 kb on - strand, within GFF996 at 990.357 kb on + strand, within GFF996 at 990.378 kb on - strand, within GFF996 at 990.435 kb on + strand, within GFF996 at 990.436 kb on + strand, within GFF996 at 990.436 kb on + strand, within GFF996 at 990.472 kb on - strand, within GFF996 at 990.488 kb on + strand, within GFF996 at 990.496 kb on - strand, within GFF996 at 990.502 kb on - strand, within GFF996 at 990.527 kb on + strand, within GFF996 at 990.534 kb on + strand, within GFF996 at 990.540 kb on + strand, within GFF996 at 990.540 kb on - strand, within GFF996 at 990.540 kb on - strand, within GFF996 at 990.543 kb on - strand, within GFF996 at 990.548 kb on - strand, within GFF996 at 990.566 kb on + strand, within GFF996 at 990.566 kb on + strand, within GFF996 at 990.572 kb on - strand, within GFF996 at 990.574 kb on - strand, within GFF996 at 990.574 kb on - strand, within GFF996 at 990.644 kb on - strand, within GFF996 at 990.644 kb on - strand, within GFF996 at 990.695 kb on + strand, within GFF996 at 990.699 kb on + strand, within GFF996 at 990.699 kb on + strand, within GFF996 at 990.699 kb on + strand, within GFF996 at 990.699 kb on + strand, within GFF996 at 990.724 kb on - strand, within GFF996 at 990.744 kb on - strand, within GFF996 at 990.749 kb on - strand, within GFF996 at 990.751 kb on - strand, within GFF996 at 990.751 kb on - strand, within GFF996 at 990.760 kb on - strand at 990.771 kb on - strand at 990.783 kb on + strand at 990.783 kb on + strand at 990.783 kb on + strand at 990.791 kb on - strand at 990.791 kb on - strand at 990.793 kb on + strand at 990.798 kb on + strand at 990.818 kb on - strand at 990.819 kb on + strand at 990.836 kb on - strand at 990.836 kb on - strand at 990.852 kb on + strand at 990.936 kb on - strand at 990.936 kb on - strand at 990.991 kb on + strand at 990.994 kb on - strand at 991.030 kb on + strand at 991.065 kb on - strand, within GFF997 at 991.070 kb on - strand, within GFF997 at 991.075 kb on + strand, within GFF997 at 991.098 kb on + strand, within GFF997 at 991.118 kb on + strand, within GFF997 at 991.122 kb on + strand, within GFF997 at 991.123 kb on + strand, within GFF997 at 991.148 kb on + strand, within GFF997 at 991.148 kb on + strand, within GFF997 at 991.175 kb on + strand, within GFF997 at 991.181 kb on + strand, within GFF997 at 991.189 kb on - strand, within GFF997 at 991.189 kb on - strand, within GFF997 at 991.189 kb on - strand, within GFF997 at 991.214 kb on - strand, within GFF997 at 991.231 kb on + strand, within GFF997 at 991.271 kb on + strand, within GFF997 at 991.279 kb on - strand, within GFF997 at 991.299 kb on + strand, within GFF997 at 991.299 kb on + strand, within GFF997 at 991.299 kb on + strand, within GFF997 at 991.299 kb on + strand, within GFF997 at 991.307 kb on - strand, within GFF997 at 991.307 kb on - strand, within GFF997 at 991.307 kb on - strand, within GFF997 at 991.322 kb on + strand, within GFF997 at 991.399 kb on + strand, within GFF997 at 991.399 kb on + strand, within GFF997 at 991.399 kb on + strand, within GFF997 at 991.404 kb on + strand, within GFF997 at 991.407 kb on - strand, within GFF997 at 991.409 kb on + strand, within GFF997 at 991.428 kb on + strand, within GFF997 at 991.436 kb on - strand, within GFF997 at 991.439 kb on + strand, within GFF997 at 991.447 kb on - strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.449 kb on + strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.457 kb on - strand, within GFF997 at 991.461 kb on + strand, within GFF997 at 991.469 kb on - strand, within GFF997 at 991.469 kb on - strand, within GFF997 at 991.471 kb on + strand, within GFF997 at 991.472 kb on - strand, within GFF997 at 991.479 kb on - strand, within GFF997 at 991.481 kb on + strand, within GFF997 at 991.494 kb on - strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.520 kb on + strand, within GFF997 at 991.528 kb on - strand, within GFF997 at 991.528 kb on - strand, within GFF997 at 991.535 kb on + strand, within GFF997 at 991.543 kb on + strand, within GFF997 at 991.548 kb on - strand, within GFF997 at 991.550 kb on + strand, within GFF997 at 991.550 kb on + strand, within GFF997 at 991.550 kb on + strand, within GFF997 at 991.553 kb on - strand, within GFF997 at 991.558 kb on - strand, within GFF997 at 991.558 kb on - strand, within GFF997 at 991.558 kb on - strand, within GFF997 at 991.560 kb on + strand, within GFF997 at 991.563 kb on - strand, within GFF997 at 991.567 kb on + strand, within GFF997 at 991.588 kb on + strand, within GFF997 at 991.593 kb on + strand, within GFF997 at 991.606 kb on + strand, within GFF997 at 991.606 kb on + strand, within GFF997 at 991.606 kb on + strand, within GFF997 at 991.611 kb on + strand, within GFF997 at 991.611 kb on + strand, within GFF997 at 991.611 kb on + strand, within GFF997 at 991.614 kb on - strand, within GFF997 at 991.614 kb on - strand, within GFF997 at 991.614 kb on - strand, within GFF997 at 991.614 kb on - strand, within GFF997 at 991.614 kb on - strand, within GFF997 at 991.619 kb on - strand, within GFF997 at 991.644 kb on + strand, within GFF997 at 991.651 kb on - strand, within GFF997 at 991.662 kb on + strand, within GFF997 at 991.681 kb on - strand at 991.686 kb on + strand at 991.697 kb on + strand at 991.702 kb on + strand at 991.702 kb on + strand at 991.705 kb on - strand at 991.707 kb on + strand at 991.707 kb on + strand at 991.707 kb on + strand at 991.707 kb on + strand at 991.707 kb on + strand at 991.712 kb on + strand at 991.715 kb on - strand at 991.715 kb on - strand at 991.722 kb on + strand at 991.786 kb on + strand at 991.786 kb on + strand at 991.788 kb on - strand at 991.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 989,311 - GFF995 0.35 +0.7 989,324 + GFF995 0.36 -0.4 989,324 + GFF995 0.36 +0.8 989,374 - GFF995 0.40 -0.1 989,404 - GFF995 0.42 -0.3 989,406 - GFF995 0.43 -0.4 989,424 - GFF995 0.44 -0.1 989,478 + GFF995 0.48 -1.1 989,486 - GFF995 0.49 -1.6 989,510 - GFF995 0.50 -0.3 989,533 + GFF995 0.52 -0.4 989,553 + GFF995 0.54 +0.9 989,555 - GFF995 0.54 -0.8 989,563 + GFF995 0.54 -0.6 989,563 + GFF995 0.54 -0.4 989,573 + GFF995 0.55 +0.1 989,581 - GFF995 0.56 -0.4 989,640 + GFF995 0.60 +0.2 989,645 + GFF995 0.60 +0.6 989,653 - GFF995 0.61 -1.5 989,670 + GFF995 0.62 -0.7 989,690 - GFF995 0.64 -0.7 989,699 - GFF995 0.64 -1.0 989,699 - GFF995 0.64 -1.1 989,736 + GFF995 0.67 -1.4 989,829 - GFF995 0.74 -0.4 989,843 - GFF995 0.75 +1.2 989,843 - GFF995 0.75 +1.0 989,856 + GFF995 0.76 -0.3 989,924 - GFF995 0.81 -1.5 989,964 + GFF995 0.84 +0.6 989,977 + GFF995 0.85 +0.2 989,977 + GFF995 0.85 -1.5 990,067 + -0.1 990,070 - +0.7 990,080 - +0.7 990,082 - -1.5 990,087 - +0.8 990,115 + -0.9 990,120 + +0.8 990,128 + -1.9 990,128 - -1.5 990,128 - +1.0 990,137 + +0.3 990,138 + -0.4 990,138 + +0.1 990,138 + +0.9 990,138 + -1.7 990,138 + -2.0 990,141 - +0.4 990,145 - -1.7 990,146 - -0.1 990,148 + +1.1 990,151 - +0.4 990,156 - +1.4 990,156 - -1.5 990,158 + -0.1 990,218 - +0.3 990,275 + -0.9 990,277 + +0.7 990,277 + +0.7 990,277 + -1.9 990,283 - +0.5 990,285 - -0.7 990,285 - -2.0 990,285 - -0.8 990,285 - -1.1 990,285 - +0.5 990,328 + -0.8 990,336 - -0.1 990,336 - -1.9 990,336 - +0.5 990,341 - +0.1 990,355 - GFF996 0.12 +1.1 990,357 + GFF996 0.13 -2.2 990,378 - GFF996 0.17 +1.0 990,435 + GFF996 0.28 -2.1 990,436 + GFF996 0.28 -1.5 990,436 + GFF996 0.28 +1.8 990,472 - GFF996 0.35 -0.5 990,488 + GFF996 0.38 -1.3 990,496 - GFF996 0.40 -0.4 990,502 - GFF996 0.41 +1.6 990,527 + GFF996 0.46 +0.6 990,534 + GFF996 0.47 +0.6 990,540 + GFF996 0.48 -2.1 990,540 - GFF996 0.48 -1.1 990,540 - GFF996 0.48 -0.6 990,543 - GFF996 0.49 +0.2 990,548 - GFF996 0.50 -1.9 990,566 + GFF996 0.53 +1.0 990,566 + GFF996 0.53 -0.2 990,572 - GFF996 0.55 -0.1 990,574 - GFF996 0.55 -0.0 990,574 - GFF996 0.55 -0.2 990,644 - GFF996 0.69 -0.5 990,644 - GFF996 0.69 +1.1 990,695 + GFF996 0.79 -1.7 990,699 + GFF996 0.79 -1.1 990,699 + GFF996 0.79 -0.7 990,699 + GFF996 0.79 -0.4 990,699 + GFF996 0.79 -0.6 990,724 - GFF996 0.84 +1.7 990,744 - GFF996 0.88 +0.1 990,749 - GFF996 0.89 -0.6 990,751 - GFF996 0.89 +0.7 990,751 - GFF996 0.89 +0.3 990,760 - -1.1 990,771 - -2.1 990,783 + -1.0 990,783 + -1.4 990,783 + +1.2 990,791 - -0.3 990,791 - +0.5 990,793 + -0.2 990,798 + -1.0 990,818 - +0.0 990,819 + +0.3 990,836 - -0.4 990,836 - +0.2 990,852 + -0.8 990,936 - -0.0 990,936 - -1.5 990,991 + -0.4 990,994 - -0.4 991,030 + +0.9 991,065 - GFF997 0.13 +1.0 991,070 - GFF997 0.13 +0.5 991,075 + GFF997 0.14 -0.1 991,098 + GFF997 0.17 +1.5 991,118 + GFF997 0.19 -2.0 991,122 + GFF997 0.20 +1.1 991,123 + GFF997 0.20 +1.0 991,148 + GFF997 0.23 -0.3 991,148 + GFF997 0.23 -0.8 991,175 + GFF997 0.27 +0.4 991,181 + GFF997 0.28 +0.0 991,189 - GFF997 0.29 +1.4 991,189 - GFF997 0.29 -1.3 991,189 - GFF997 0.29 -0.0 991,214 - GFF997 0.32 -0.4 991,231 + GFF997 0.34 +0.4 991,271 + GFF997 0.39 +0.2 991,279 - GFF997 0.40 -2.2 991,299 + GFF997 0.43 +0.3 991,299 + GFF997 0.43 +0.7 991,299 + GFF997 0.43 +0.9 991,299 + GFF997 0.43 -2.0 991,307 - GFF997 0.44 +0.5 991,307 - GFF997 0.44 -1.2 991,307 - GFF997 0.44 -1.4 991,322 + GFF997 0.46 +1.1 991,399 + GFF997 0.56 +0.1 991,399 + GFF997 0.56 -1.4 991,399 + GFF997 0.56 -0.4 991,404 + GFF997 0.56 -0.4 991,407 - GFF997 0.57 +0.3 991,409 + GFF997 0.57 +0.3 991,428 + GFF997 0.59 -1.4 991,436 - GFF997 0.60 +1.0 991,439 + GFF997 0.61 +0.4 991,447 - GFF997 0.62 -0.6 991,449 + GFF997 0.62 -2.1 991,449 + GFF997 0.62 -0.2 991,449 + GFF997 0.62 +0.8 991,449 + GFF997 0.62 -0.9 991,449 + GFF997 0.62 -0.2 991,449 + GFF997 0.62 -1.7 991,457 - GFF997 0.63 +0.0 991,457 - GFF997 0.63 -0.2 991,457 - GFF997 0.63 +0.8 991,457 - GFF997 0.63 -1.3 991,457 - GFF997 0.63 +0.3 991,457 - GFF997 0.63 +0.4 991,457 - GFF997 0.63 -1.5 991,457 - GFF997 0.63 -1.4 991,461 + GFF997 0.64 +0.1 991,469 - GFF997 0.65 +0.7 991,469 - GFF997 0.65 -1.1 991,471 + GFF997 0.65 +0.3 991,472 - GFF997 0.65 -0.8 991,479 - GFF997 0.66 +0.3 991,481 + GFF997 0.66 -0.4 991,494 - GFF997 0.68 -0.8 991,520 + GFF997 0.71 -1.0 991,520 + GFF997 0.71 -1.3 991,520 + GFF997 0.71 -0.6 991,520 + GFF997 0.71 -0.5 991,520 + GFF997 0.71 -2.1 991,520 + GFF997 0.71 +1.2 991,528 - GFF997 0.72 +0.3 991,528 - GFF997 0.72 -0.0 991,535 + GFF997 0.73 -0.3 991,543 + GFF997 0.74 -0.6 991,548 - GFF997 0.75 +0.6 991,550 + GFF997 0.75 -0.3 991,550 + GFF997 0.75 -0.3 991,550 + GFF997 0.75 +0.8 991,553 - GFF997 0.75 -0.6 991,558 - GFF997 0.76 +0.4 991,558 - GFF997 0.76 -1.5 991,558 - GFF997 0.76 +0.6 991,560 + GFF997 0.76 -0.6 991,563 - GFF997 0.77 +0.5 991,567 + GFF997 0.77 +0.4 991,588 + GFF997 0.80 +1.0 991,593 + GFF997 0.81 -1.3 991,606 + GFF997 0.82 +0.5 991,606 + GFF997 0.82 +0.3 991,606 + GFF997 0.82 -3.1 991,611 + GFF997 0.83 -0.6 991,611 + GFF997 0.83 -0.1 991,611 + GFF997 0.83 -2.0 991,614 - GFF997 0.83 +0.2 991,614 - GFF997 0.83 -0.7 991,614 - GFF997 0.83 +0.3 991,614 - GFF997 0.83 +0.5 991,614 - GFF997 0.83 +0.7 991,619 - GFF997 0.84 +0.3 991,644 + GFF997 0.87 +0.6 991,651 - GFF997 0.88 +0.3 991,662 + GFF997 0.89 +1.9 991,681 - -1.9 991,686 + -1.9 991,697 + +1.1 991,702 + -1.1 991,702 + +1.0 991,705 - +1.0 991,707 + -0.7 991,707 + -0.5 991,707 + -0.0 991,707 + +1.0 991,707 + -0.1 991,712 + -0.5 991,715 - -0.7 991,715 - +1.5 991,722 + -0.4 991,786 + +1.1 991,786 + -0.9 991,788 - +0.7 991,790 - +0.5
Or see this region's nucleotide sequence