Strain Fitness in Sphingobium sp. HT1-2 around GFF835

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
822,098	+		GFF834	0.58	-0.2
822,140	-		GFF834	0.60	+0.7
822,150	+		GFF834	0.61	+0.7
822,150	+		GFF834	0.61	+0.6
822,152	+		GFF834	0.61	-2.0
822,183	+		GFF834	0.62	-1.1
822,195	-		GFF834	0.63	-1.1
822,201	+		GFF834	0.63	+0.2
822,206	+		GFF834	0.63	+1.0
822,206	+		GFF834	0.63	+0.2
822,215	+		GFF834	0.64	+0.5
822,219	-		GFF834	0.64	+1.4
822,219	-		GFF834	0.64	-1.1
822,251	+		GFF834	0.65	+0.3
822,259	-		GFF834	0.66	-1.2
822,275	+		GFF834	0.67	+0.1
822,283	-		GFF834	0.67	+1.3
822,296	-		GFF834	0.68	+0.8
822,298	+		GFF834	0.68	-1.7
822,330	-		GFF834	0.69	+0.9
822,330	-		GFF834	0.69	+0.1
822,330	-		GFF834	0.69	-0.4
822,330	-		GFF834	0.69	+0.4
822,335	-		GFF834	0.69	-0.6
822,340	-		GFF834	0.70	-1.2
822,348	-		GFF834	0.70	-1.1
822,375	+		GFF834	0.71	+0.4
822,380	+		GFF834	0.72	+1.2
822,388	-		GFF834	0.72	-0.1
822,388	-		GFF834	0.72	-0.0
822,401	+		GFF834	0.73	+1.2
822,404	+		GFF834	0.73	+0.6
822,410	-		GFF834	0.73	+0.7
822,410	-		GFF834	0.73	+0.3
822,410	-		GFF834	0.73	+0.1
822,465	+		GFF834	0.76	-0.3
822,495	-		GFF834	0.77	+0.4
822,495	-		GFF834	0.77	-1.5
822,518	-		GFF834	0.78	+0.4
822,518	-		GFF834	0.78	-0.6
822,534	+		GFF834	0.79	-0.7
822,537	-		GFF834	0.79	+0.6
822,539	+		GFF834	0.79	+0.6
822,547	-		GFF834	0.80	+1.1
822,564	-		GFF834	0.81	+1.3
822,580	-		GFF834	0.81	+0.5
822,629	-		GFF834	0.84	+1.1
822,682	-		GFF834	0.86	+0.9
822,711	-		GFF834	0.88	+0.1
822,721	-		GFF834	0.88	+0.1
822,728	-		GFF834	0.88	-1.3
822,728	-		GFF834	0.88	-0.2
822,733	+		GFF834	0.89	+1.0
822,741	+		GFF834	0.89	+0.2
822,749	-		GFF834	0.89	+0.2
822,749	-		GFF834	0.89	-0.8
822,749	-		GFF834	0.89	+2.4
822,753	+		GFF834	0.90	-0.2
822,755	+		GFF834	0.90	-0.2
822,765	+				-0.6
822,773	-				+0.9
822,773	-				+0.3
822,792	+				+0.1
822,808	+				+0.5
822,823	+				-0.7
822,831	-				-0.1
822,831	-				-1.1
822,849	-				+0.6
822,849	-				+0.3
822,858	-				-0.6
822,873	-				-1.0
822,884	-				+0.5
822,901	+				-0.3
822,901	+				-1.6
822,901	-				-1.3
822,909	-				-0.0
822,909	-				+0.2
822,909	-				-0.8
822,938	+				-1.3
822,946	-				+0.8
822,946	-				-0.5
822,971	-				+1.1
822,979	+				-0.7
822,980	-				-0.9
822,987	-				+0.3
822,988	-				-0.3
822,988	-				+0.1
822,993	-				-0.4
822,993	-				+0.9
822,993	-				-1.6
822,993	-				+0.7
822,995	+				+0.6
823,000	+				+0.8
823,003	-				+0.5
823,018	+				-0.4
823,018	+				+1.1
823,018	+				-2.1
823,028	-				-1.9
823,060	-				+0.4
823,068	+				-0.9
823,085	+				-0.2
823,087	+				-1.8
823,093	-				-0.4
823,152	+				-0.3
823,311	+		GFF835	0.13	-1.2
823,319	-		GFF835	0.14	-0.2
823,367	+		GFF835	0.16	-1.4
823,369	-		GFF835	0.16	+0.3
823,425	-		GFF835	0.19	-0.1
823,464	+		GFF835	0.22	-0.8
823,464	+		GFF835	0.22	-0.0
823,477	-		GFF835	0.22	-0.6
823,477	-		GFF835	0.22	-0.2
823,500	+		GFF835	0.24	+1.2
823,559	-		GFF835	0.27	-1.6
823,647	-		GFF835	0.32	-0.7
823,672	+		GFF835	0.33	-1.7
823,701	-		GFF835	0.35	-0.1
823,719	+		GFF835	0.36	-0.3
823,727	-		GFF835	0.36	-0.7
823,739	-		GFF835	0.37	+0.6
823,739	-		GFF835	0.37	+0.3
823,755	+		GFF835	0.38	-0.8
823,755	+		GFF835	0.38	+0.4
823,755	+		GFF835	0.38	+0.4
823,755	+		GFF835	0.38	-1.1
823,763	-		GFF835	0.38	-0.1
823,763	-		GFF835	0.38	-0.5
823,763	-		GFF835	0.38	+0.8
823,763	-		GFF835	0.38	+0.4
823,763	-		GFF835	0.38	+0.0
823,763	-		GFF835	0.38	+0.2
823,798	+		GFF835	0.40	-1.2
823,798	+		GFF835	0.40	-0.1
823,806	-		GFF835	0.41	-0.4
823,811	-		GFF835	0.41	-0.8
823,915	-		GFF835	0.47	+0.4
823,940	+		GFF835	0.48	+0.2
823,954	-		GFF835	0.49	-1.2
823,955	+		GFF835	0.49	-1.1
823,968	+		GFF835	0.50	-0.3
823,976	-		GFF835	0.50	-0.2
824,035	+		GFF835	0.54	-1.4
824,035	+		GFF835	0.54	-0.1
824,035	+		GFF835	0.54	-0.3
824,043	-		GFF835	0.54	-0.2
824,043	-		GFF835	0.54	+0.1
824,119	-		GFF835	0.58	-0.2
824,119	-		GFF835	0.58	-0.1
824,140	-		GFF835	0.60	-0.4
824,142	+		GFF835	0.60	+1.0
824,246	+		GFF835	0.66	+1.2
824,254	-		GFF835	0.66	-1.4
824,299	+		GFF835	0.69	+0.9
824,345	+		GFF835	0.71	+0.6
824,374	+		GFF835	0.73	+0.2
824,389	+		GFF835	0.74	-2.4
824,448	+		GFF835	0.77	-0.6
824,462	-		GFF835	0.78	-0.1
824,574	-		GFF835	0.84	+0.3
824,640	+		GFF835	0.88	-1.1
824,640	+		GFF835	0.88	-2.1
824,692	+				+0.5
824,692	+				-0.9
824,692	+				+0.9
824,752	+				-0.3
824,771	-				+0.7
824,808	+				+0.0
824,808	+				-1.3
824,821	+				+0.1
824,829	-				-0.1
824,834	-				-1.7
824,839	-				+0.6
824,853	+				-0.8
824,853	+				-0.4
824,861	-				-0.4
824,861	-				-1.2
824,861	-				+0.5
824,891	+		GFF836	0.16	+0.2
824,891	+		GFF836	0.16	-1.7
824,891	+		GFF836	0.16	-0.7
824,891	+		GFF836	0.16	-0.5
824,892	+		GFF836	0.17	-0.3
824,897	+		GFF836	0.20	+1.1
824,898	+		GFF836	0.21	+0.4
824,898	+		GFF836	0.21	+1.0
824,898	+		GFF836	0.21	+0.7
824,898	+		GFF836	0.21	+0.9
824,899	-		GFF836	0.22	-1.5
824,899	-		GFF836	0.22	+0.7
824,899	-		GFF836	0.22	-0.0
824,906	-		GFF836	0.26	-2.0
824,906	-		GFF836	0.26	+0.9
824,906	-		GFF836	0.26	+0.3
824,906	-		GFF836	0.26	-1.0
824,906	-		GFF836	0.26	-0.3
824,906	-		GFF836	0.26	-1.3
824,906	-		GFF836	0.26	-0.4
824,906	-		GFF836	0.26	-1.4
824,926	+		GFF836	0.39	-0.7
824,926	+		GFF836	0.39	-2.4
824,926	+		GFF836	0.39	+0.3
824,926	+		GFF836	0.39	-1.7
824,926	+		GFF836	0.39	-1.0
824,926	+		GFF836	0.39	-2.0
824,934	-		GFF836	0.44	-1.2
824,944	-		GFF836	0.51	-1.6
824,967	+		GFF836	0.66	+0.2
825,046	+				+0.0
825,047	+				+1.0
825,203	-				-0.1
825,258	-		GFF838	0.15	-0.4
825,270	+		GFF838	0.20	-0.6
825,270	+		GFF838	0.20	-1.8
825,270	+		GFF838	0.20	+0.1
825,270	+		GFF838	0.20	-1.2
825,270	+		GFF838	0.20	-0.3
825,270	+		GFF838	0.20	-1.5
825,270	+		GFF838	0.20	-1.5
825,270	+		GFF838	0.20	-0.2
825,270	+		GFF838	0.20	+1.1
825,278	-		GFF838	0.23	-0.1
825,278	-		GFF838	0.23	+0.0
825,278	-		GFF838	0.23	+0.1
825,278	-		GFF838	0.23	+1.3
825,278	-		GFF838	0.23	+0.2
825,278	-		GFF838	0.23	-0.5
825,278	-		GFF838	0.23	-2.4
825,292	-		GFF838	0.28	-0.3
825,335	-		GFF838	0.45	-0.4
825,345	+		GFF838	0.49	-0.1
825,359	+		GFF838	0.55	+1.1
825,359	+		GFF838	0.55	-1.2
825,364	+		GFF838	0.56	+1.2
825,364	+		GFF838	0.56	-0.4
825,372	-		GFF838	0.60	-0.5
825,407	+		GFF838	0.73	-0.6
825,407	+		GFF838	0.73	-1.4
825,415	-		GFF838	0.76	+0.4
825,415	-		GFF838	0.76	+0.2
825,415	-		GFF838	0.76	+0.5
825,415	-		GFF838	0.76	+0.6
825,415	-		GFF838	0.76	-0.3
825,425	-		GFF838	0.80	-1.1
825,430	-		GFF838	0.82	+0.9
825,430	-		GFF838	0.82	-1.2
825,432	+		GFF838	0.83	-1.1
825,440	+		GFF838	0.86	+0.5
825,440	+		GFF838	0.86	+0.9
825,440	-		GFF838	0.86	-0.1
825,446	+		GFF838	0.89	-1.3
825,448	-		GFF838	0.89	-1.8
825,469	-				+0.2
825,486	-				-1.2
825,486	-				-2.0
825,504	-				+0.1
825,511	+				-0.3
825,511	+				+0.4
825,511	+				-2.8
825,511	+				-0.5
825,511	+				-0.2
825,519	+				-0.1
825,521	+				+1.5
825,532	+				-0.4
825,532	+				+1.0
825,540	-				+0.6
825,542	+				-1.7
825,545	-				+0.3
825,545	-				+0.3
825,550	-				-0.7
825,576	+				+0.0
825,580	+				+1.3
825,580	-				-1.6
825,583	-				-0.9
825,585	-				-0.8
825,603	-				-2.2
825,616	+				+1.1
825,616	+				+0.6
825,622	+				-0.9
825,624	-				+0.5
825,659	+				-0.9
825,659	+				-0.1
825,664	-				+1.6
825,671	+				+0.4
825,672	-				-0.5
825,676	+				+0.1
825,684	-				+0.6
825,684	-				+0.5
825,684	-				+0.1
825,684	-				-0.3
825,686	+				-0.1
825,686	-				-1.0
825,691	-				-1.1
825,692	-				+0.5
825,694	-				+0.3
825,696	+				-1.1
825,700	+				+1.5
825,704	-		GFF839	0.10	+0.9
825,714	+		GFF839	0.11	+0.5
825,714	+		GFF839	0.11	-0.1
825,722	-		GFF839	0.11	-1.8
825,722	-		GFF839	0.11	-1.4
825,722	-		GFF839	0.11	-2.2
825,727	-		GFF839	0.11	-0.1
825,734	-		GFF839	0.12	-0.7
825,744	-		GFF839	0.12	+0.8
825,749	-		GFF839	0.12	+0.0
825,764	-		GFF839	0.13	-0.8
825,764	-		GFF839	0.13	-1.7
825,764	-		GFF839	0.13	-0.7
825,764	-		GFF839	0.13	-0.2
825,837	+		GFF839	0.17	-1.1
825,848	+		GFF839	0.17	-0.7
825,853	+		GFF839	0.17	+0.8