Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF783 and GFF784 are separated by 156 nucleotides GFF784 and GFF785 are separated by 13 nucleotides GFF785 and GFF786 are separated by 286 nucleotides
GFF783 - protein of unknown function DUF924, at 772,389 to 772,964
GFF783
GFF784 - Nitrogen regulatory protein P-II, GlnK, at 773,121 to 773,459
GFF784
GFF785 - Ammonium transporter, at 773,473 to 774,819
GFF785
GFF786 - Phytoene synthase (EC 2.5.1.32), at 775,106 to 776,095
GFF786
Position (kb) 773
774
775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 772.479 kb on + strand, within GFF783 at 772.487 kb on - strand, within GFF783 at 772.487 kb on - strand, within GFF783 at 772.497 kb on - strand, within GFF783 at 772.497 kb on - strand, within GFF783 at 772.497 kb on - strand, within GFF783 at 772.511 kb on + strand, within GFF783 at 772.519 kb on - strand, within GFF783 at 772.524 kb on - strand, within GFF783 at 772.588 kb on + strand, within GFF783 at 772.613 kb on - strand, within GFF783 at 772.627 kb on + strand, within GFF783 at 772.645 kb on + strand, within GFF783 at 772.649 kb on + strand, within GFF783 at 772.649 kb on + strand, within GFF783 at 772.650 kb on + strand, within GFF783 at 772.650 kb on + strand, within GFF783 at 772.650 kb on + strand, within GFF783 at 772.658 kb on - strand, within GFF783 at 772.704 kb on + strand, within GFF783 at 772.709 kb on + strand, within GFF783 at 772.709 kb on + strand, within GFF783 at 772.717 kb on - strand, within GFF783 at 772.732 kb on - strand, within GFF783 at 772.771 kb on + strand, within GFF783 at 772.806 kb on - strand, within GFF783 at 772.882 kb on + strand, within GFF783 at 772.892 kb on + strand, within GFF783 at 772.902 kb on + strand, within GFF783 at 772.910 kb on - strand at 772.910 kb on - strand at 772.920 kb on - strand at 772.958 kb on - strand at 772.961 kb on - strand at 773.129 kb on + strand at 773.163 kb on - strand, within GFF784 at 773.208 kb on - strand, within GFF784 at 773.225 kb on - strand, within GFF784 at 773.242 kb on - strand, within GFF784 at 773.249 kb on - strand, within GFF784 at 773.416 kb on - strand, within GFF784 at 773.426 kb on - strand at 773.431 kb on - strand at 773.471 kb on - strand at 773.518 kb on - strand at 773.544 kb on - strand at 773.554 kb on - strand at 773.554 kb on - strand at 773.561 kb on - strand at 773.575 kb on + strand at 773.575 kb on + strand at 773.585 kb on + strand at 773.586 kb on + strand at 773.596 kb on + strand at 773.596 kb on + strand at 773.609 kb on + strand, within GFF785 at 773.650 kb on + strand, within GFF785 at 773.653 kb on - strand, within GFF785 at 773.653 kb on - strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.655 kb on + strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.663 kb on - strand, within GFF785 at 773.666 kb on + strand, within GFF785 at 773.674 kb on - strand, within GFF785 at 773.691 kb on + strand, within GFF785 at 773.693 kb on - strand, within GFF785 at 773.706 kb on + strand, within GFF785 at 773.731 kb on + strand, within GFF785 at 773.736 kb on + strand, within GFF785 at 773.739 kb on - strand, within GFF785 at 773.744 kb on - strand, within GFF785 at 773.744 kb on - strand, within GFF785 at 773.744 kb on - strand, within GFF785 at 773.744 kb on - strand, within GFF785 at 773.746 kb on + strand, within GFF785 at 773.746 kb on + strand, within GFF785 at 773.754 kb on - strand, within GFF785 at 773.754 kb on - strand, within GFF785 at 773.754 kb on - strand, within GFF785 at 773.764 kb on - strand, within GFF785 at 773.776 kb on + strand, within GFF785 at 773.783 kb on - strand, within GFF785 at 773.784 kb on - strand, within GFF785 at 773.793 kb on + strand, within GFF785 at 773.793 kb on + strand, within GFF785 at 773.801 kb on - strand, within GFF785 at 773.801 kb on - strand, within GFF785 at 773.817 kb on - strand, within GFF785 at 773.841 kb on - strand, within GFF785 at 773.868 kb on - strand, within GFF785 at 773.893 kb on + strand, within GFF785 at 773.893 kb on + strand, within GFF785 at 773.893 kb on + strand, within GFF785 at 773.893 kb on + strand, within GFF785 at 773.935 kb on + strand, within GFF785 at 773.938 kb on - strand, within GFF785 at 773.938 kb on - strand, within GFF785 at 773.938 kb on - strand, within GFF785 at 773.941 kb on + strand, within GFF785 at 773.944 kb on - strand, within GFF785 at 773.949 kb on - strand, within GFF785 at 773.949 kb on - strand, within GFF785 at 773.949 kb on - strand, within GFF785 at 773.951 kb on + strand, within GFF785 at 773.954 kb on - strand, within GFF785 at 773.980 kb on + strand, within GFF785 at 773.981 kb on + strand, within GFF785 at 774.003 kb on + strand, within GFF785 at 774.103 kb on - strand, within GFF785 at 774.108 kb on - strand, within GFF785 at 774.129 kb on + strand, within GFF785 at 774.137 kb on + strand, within GFF785 at 774.137 kb on + strand, within GFF785 at 774.137 kb on + strand, within GFF785 at 774.137 kb on + strand, within GFF785 at 774.137 kb on + strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.145 kb on - strand, within GFF785 at 774.147 kb on + strand, within GFF785 at 774.165 kb on + strand, within GFF785 at 774.176 kb on + strand, within GFF785 at 774.181 kb on + strand, within GFF785 at 774.191 kb on + strand, within GFF785 at 774.191 kb on + strand, within GFF785 at 774.191 kb on + strand, within GFF785 at 774.191 kb on + strand, within GFF785 at 774.199 kb on - strand, within GFF785 at 774.199 kb on - strand, within GFF785 at 774.199 kb on - strand, within GFF785 at 774.199 kb on - strand, within GFF785 at 774.220 kb on + strand, within GFF785 at 774.220 kb on - strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.222 kb on + strand, within GFF785 at 774.225 kb on - strand, within GFF785 at 774.227 kb on + strand, within GFF785 at 774.230 kb on - strand, within GFF785 at 774.230 kb on - strand, within GFF785 at 774.230 kb on - strand, within GFF785 at 774.261 kb on + strand, within GFF785 at 774.295 kb on + strand, within GFF785 at 774.295 kb on + strand, within GFF785 at 774.302 kb on - strand, within GFF785 at 774.302 kb on - strand, within GFF785 at 774.303 kb on - strand, within GFF785 at 774.330 kb on + strand, within GFF785 at 774.330 kb on + strand, within GFF785 at 774.330 kb on + strand, within GFF785 at 774.332 kb on + strand, within GFF785 at 774.338 kb on - strand, within GFF785 at 774.338 kb on - strand, within GFF785 at 774.338 kb on - strand, within GFF785 at 774.340 kb on - strand, within GFF785 at 774.351 kb on + strand, within GFF785 at 774.373 kb on + strand, within GFF785 at 774.381 kb on - strand, within GFF785 at 774.386 kb on + strand, within GFF785 at 774.504 kb on + strand, within GFF785 at 774.509 kb on + strand, within GFF785 at 774.510 kb on + strand, within GFF785 at 774.541 kb on - strand, within GFF785 at 774.541 kb on - strand, within GFF785 at 774.542 kb on + strand, within GFF785 at 774.579 kb on + strand, within GFF785 at 774.602 kb on + strand, within GFF785 at 774.607 kb on + strand, within GFF785 at 774.610 kb on - strand, within GFF785 at 774.644 kb on + strand, within GFF785 at 774.644 kb on + strand, within GFF785 at 774.657 kb on + strand, within GFF785 at 774.673 kb on + strand, within GFF785 at 774.685 kb on - strand at 774.694 kb on + strand at 774.695 kb on - strand at 774.726 kb on + strand at 774.732 kb on + strand at 774.740 kb on - strand at 774.740 kb on - strand at 774.740 kb on - strand at 774.762 kb on - strand at 774.783 kb on - strand at 774.783 kb on - strand at 774.790 kb on - strand at 774.813 kb on + strand at 774.813 kb on + strand at 774.821 kb on - strand at 774.866 kb on + strand at 774.869 kb on - strand at 774.902 kb on + strand at 774.932 kb on + strand at 774.958 kb on + strand at 774.971 kb on - strand at 774.974 kb on + strand at 774.982 kb on - strand at 774.983 kb on - strand at 775.018 kb on + strand at 775.018 kb on + strand at 775.026 kb on - strand at 775.036 kb on - strand at 775.036 kb on - strand at 775.113 kb on - strand at 775.130 kb on - strand at 775.130 kb on - strand at 775.137 kb on - strand at 775.149 kb on - strand at 775.154 kb on - strand at 775.154 kb on - strand at 775.172 kb on + strand at 775.180 kb on - strand at 775.189 kb on - strand at 775.200 kb on + strand at 775.213 kb on - strand, within GFF786 at 775.213 kb on - strand, within GFF786 at 775.248 kb on - strand, within GFF786 at 775.312 kb on - strand, within GFF786 at 775.314 kb on + strand, within GFF786 at 775.349 kb on + strand, within GFF786 at 775.488 kb on - strand, within GFF786 at 775.509 kb on - strand, within GFF786 at 775.535 kb on - strand, within GFF786 at 775.556 kb on - strand, within GFF786 at 775.568 kb on + strand, within GFF786 at 775.576 kb on - strand, within GFF786 at 775.578 kb on + strand, within GFF786 at 775.586 kb on - strand, within GFF786 at 775.596 kb on + strand, within GFF786 at 775.622 kb on + strand, within GFF786 at 775.671 kb on - strand, within GFF786 at 775.678 kb on + strand, within GFF786 at 775.718 kb on + strand, within GFF786 at 775.723 kb on + strand, within GFF786 at 775.725 kb on - strand, within GFF786 at 775.733 kb on - strand, within GFF786 at 775.741 kb on - strand, within GFF786 at 775.762 kb on + strand, within GFF786
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 772,479 + GFF783 0.16 +0.4 772,487 - GFF783 0.17 +0.7 772,487 - GFF783 0.17 +2.5 772,497 - GFF783 0.19 +1.2 772,497 - GFF783 0.19 -1.6 772,497 - GFF783 0.19 +0.4 772,511 + GFF783 0.21 +0.7 772,519 - GFF783 0.23 -0.8 772,524 - GFF783 0.23 -0.2 772,588 + GFF783 0.35 +1.5 772,613 - GFF783 0.39 -2.1 772,627 + GFF783 0.41 +1.2 772,645 + GFF783 0.44 -0.7 772,649 + GFF783 0.45 -0.1 772,649 + GFF783 0.45 -1.1 772,650 + GFF783 0.45 -0.1 772,650 + GFF783 0.45 -0.2 772,650 + GFF783 0.45 -0.2 772,658 - GFF783 0.47 -0.6 772,704 + GFF783 0.55 -0.2 772,709 + GFF783 0.56 +2.5 772,709 + GFF783 0.56 +0.7 772,717 - GFF783 0.57 +2.1 772,732 - GFF783 0.60 -0.1 772,771 + GFF783 0.66 -0.4 772,806 - GFF783 0.72 -0.6 772,882 + GFF783 0.86 +0.5 772,892 + GFF783 0.87 -1.4 772,902 + GFF783 0.89 -0.7 772,910 - +0.5 772,910 - +0.3 772,920 - +0.6 772,958 - -0.9 772,961 - -1.0 773,129 + -1.4 773,163 - GFF784 0.12 -2.8 773,208 - GFF784 0.26 -1.3 773,225 - GFF784 0.31 -2.3 773,242 - GFF784 0.36 -2.1 773,249 - GFF784 0.38 -2.1 773,416 - GFF784 0.87 -0.6 773,426 - -1.9 773,431 - -2.0 773,471 - -1.2 773,518 - -0.9 773,544 - -1.1 773,554 - -1.5 773,554 - -3.5 773,561 - -1.1 773,575 + -3.4 773,575 + -3.1 773,585 + -1.1 773,586 + -2.4 773,596 + -2.7 773,596 + -2.7 773,609 + GFF785 0.10 -2.4 773,650 + GFF785 0.13 -4.5 773,653 - GFF785 0.13 -1.4 773,653 - GFF785 0.13 -2.5 773,655 + GFF785 0.14 -2.1 773,655 + GFF785 0.14 -3.5 773,655 + GFF785 0.14 -3.8 773,655 + GFF785 0.14 -3.6 773,655 + GFF785 0.14 -0.6 773,655 + GFF785 0.14 -2.0 773,655 + GFF785 0.14 -0.7 773,655 + GFF785 0.14 -1.4 773,663 - GFF785 0.14 -2.5 773,663 - GFF785 0.14 -2.2 773,663 - GFF785 0.14 -1.4 773,663 - GFF785 0.14 -1.6 773,663 - GFF785 0.14 -3.7 773,663 - GFF785 0.14 -2.1 773,663 - GFF785 0.14 -1.6 773,663 - GFF785 0.14 -2.9 773,663 - GFF785 0.14 -1.2 773,663 - GFF785 0.14 -1.1 773,663 - GFF785 0.14 -3.3 773,666 + GFF785 0.14 -2.5 773,674 - GFF785 0.15 -2.2 773,691 + GFF785 0.16 -2.1 773,693 - GFF785 0.16 -2.6 773,706 + GFF785 0.17 -2.9 773,731 + GFF785 0.19 -2.7 773,736 + GFF785 0.20 -1.5 773,739 - GFF785 0.20 -2.5 773,744 - GFF785 0.20 -3.1 773,744 - GFF785 0.20 -2.1 773,744 - GFF785 0.20 -1.1 773,744 - GFF785 0.20 -1.4 773,746 + GFF785 0.20 -0.1 773,746 + GFF785 0.20 -2.0 773,754 - GFF785 0.21 -2.4 773,754 - GFF785 0.21 -2.2 773,754 - GFF785 0.21 -2.3 773,764 - GFF785 0.22 -1.2 773,776 + GFF785 0.22 -1.7 773,783 - GFF785 0.23 -1.9 773,784 - GFF785 0.23 -1.0 773,793 + GFF785 0.24 -2.1 773,793 + GFF785 0.24 -2.2 773,801 - GFF785 0.24 -3.6 773,801 - GFF785 0.24 -3.2 773,817 - GFF785 0.26 -1.7 773,841 - GFF785 0.27 -2.6 773,868 - GFF785 0.29 -2.6 773,893 + GFF785 0.31 -1.1 773,893 + GFF785 0.31 -1.1 773,893 + GFF785 0.31 -0.9 773,893 + GFF785 0.31 -2.7 773,935 + GFF785 0.34 -0.8 773,938 - GFF785 0.35 -1.9 773,938 - GFF785 0.35 -2.9 773,938 - GFF785 0.35 -3.0 773,941 + GFF785 0.35 -2.4 773,944 - GFF785 0.35 -0.9 773,949 - GFF785 0.35 -3.5 773,949 - GFF785 0.35 -0.6 773,949 - GFF785 0.35 -2.3 773,951 + GFF785 0.35 -2.1 773,954 - GFF785 0.36 -2.4 773,980 + GFF785 0.38 -3.2 773,981 + GFF785 0.38 -0.4 774,003 + GFF785 0.39 -2.9 774,103 - GFF785 0.47 -3.4 774,108 - GFF785 0.47 -1.6 774,129 + GFF785 0.49 -1.0 774,137 + GFF785 0.49 -3.8 774,137 + GFF785 0.49 -1.4 774,137 + GFF785 0.49 -1.9 774,137 + GFF785 0.49 -2.0 774,137 + GFF785 0.49 -0.4 774,145 - GFF785 0.50 +0.1 774,145 - GFF785 0.50 -2.0 774,145 - GFF785 0.50 +0.5 774,145 - GFF785 0.50 -2.8 774,145 - GFF785 0.50 -1.1 774,145 - GFF785 0.50 -1.5 774,145 - GFF785 0.50 -0.6 774,145 - GFF785 0.50 -2.0 774,147 + GFF785 0.50 -1.9 774,165 + GFF785 0.51 -2.4 774,176 + GFF785 0.52 -2.3 774,181 + GFF785 0.53 -0.3 774,191 + GFF785 0.53 -1.2 774,191 + GFF785 0.53 -2.7 774,191 + GFF785 0.53 -0.3 774,191 + GFF785 0.53 -2.7 774,199 - GFF785 0.54 -1.6 774,199 - GFF785 0.54 -0.5 774,199 - GFF785 0.54 -2.6 774,199 - GFF785 0.54 -0.2 774,220 + GFF785 0.55 -1.9 774,220 - GFF785 0.55 -2.7 774,222 + GFF785 0.56 -0.3 774,222 + GFF785 0.56 -0.8 774,222 + GFF785 0.56 -1.2 774,222 + GFF785 0.56 -1.4 774,222 + GFF785 0.56 -0.7 774,222 + GFF785 0.56 +0.4 774,225 - GFF785 0.56 -1.9 774,227 + GFF785 0.56 -2.4 774,230 - GFF785 0.56 -0.6 774,230 - GFF785 0.56 -1.4 774,230 - GFF785 0.56 -0.8 774,261 + GFF785 0.59 -2.5 774,295 + GFF785 0.61 -3.4 774,295 + GFF785 0.61 -3.1 774,302 - GFF785 0.62 -2.6 774,302 - GFF785 0.62 +0.8 774,303 - GFF785 0.62 -2.9 774,330 + GFF785 0.64 -2.4 774,330 + GFF785 0.64 -1.6 774,330 + GFF785 0.64 -3.2 774,332 + GFF785 0.64 -1.0 774,338 - GFF785 0.64 -2.0 774,338 - GFF785 0.64 -2.4 774,338 - GFF785 0.64 -1.6 774,340 - GFF785 0.64 -1.0 774,351 + GFF785 0.65 -3.2 774,373 + GFF785 0.67 -1.1 774,381 - GFF785 0.67 -1.4 774,386 + GFF785 0.68 -2.7 774,504 + GFF785 0.77 -0.2 774,509 + GFF785 0.77 -3.0 774,510 + GFF785 0.77 -1.5 774,541 - GFF785 0.79 -3.4 774,541 - GFF785 0.79 -0.4 774,542 + GFF785 0.79 -1.1 774,579 + GFF785 0.82 +0.0 774,602 + GFF785 0.84 -1.1 774,607 + GFF785 0.84 +0.0 774,610 - GFF785 0.84 -2.4 774,644 + GFF785 0.87 -3.2 774,644 + GFF785 0.87 -2.3 774,657 + GFF785 0.88 -2.5 774,673 + GFF785 0.89 -2.1 774,685 - -1.0 774,694 + -0.8 774,695 - -1.2 774,726 + -1.2 774,732 + -1.8 774,740 - -1.6 774,740 - -3.6 774,740 - -3.0 774,762 - -2.6 774,783 - -2.0 774,783 - -2.3 774,790 - -4.2 774,813 + -0.5 774,813 + +0.9 774,821 - +0.0 774,866 + +0.6 774,869 - +1.1 774,902 + -0.1 774,932 + +1.0 774,958 + -0.7 774,971 - +1.0 774,974 + -1.6 774,982 - -0.0 774,983 - -1.3 775,018 + -0.7 775,018 + +0.6 775,026 - -2.6 775,036 - +0.1 775,036 - -1.1 775,113 - +0.7 775,130 - +1.0 775,130 - +0.4 775,137 - +0.2 775,149 - +1.1 775,154 - -0.4 775,154 - +0.8 775,172 + +1.1 775,180 - +0.4 775,189 - -0.8 775,200 + -0.0 775,213 - GFF786 0.11 -0.3 775,213 - GFF786 0.11 -0.5 775,248 - GFF786 0.14 +0.5 775,312 - GFF786 0.21 -1.4 775,314 + GFF786 0.21 +0.5 775,349 + GFF786 0.25 -0.7 775,488 - GFF786 0.39 -1.9 775,509 - GFF786 0.41 +0.3 775,535 - GFF786 0.43 +1.2 775,556 - GFF786 0.45 -0.2 775,568 + GFF786 0.47 -0.3 775,576 - GFF786 0.47 +0.2 775,578 + GFF786 0.48 -0.4 775,586 - GFF786 0.48 -0.6 775,596 + GFF786 0.49 -0.4 775,622 + GFF786 0.52 -0.9 775,671 - GFF786 0.57 +0.4 775,678 + GFF786 0.58 -0.4 775,718 + GFF786 0.62 -0.8 775,723 + GFF786 0.62 +0.2 775,725 - GFF786 0.63 -1.4 775,733 - GFF786 0.63 -0.9 775,741 - GFF786 0.64 +0.1 775,762 + GFF786 0.66 -0.8
Or see this region's nucleotide sequence