Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF765 and GFF766 are separated by 0 nucleotides GFF766 and GFF767 are separated by 140 nucleotides GFF767 and GFF768 are separated by 137 nucleotides
GFF765 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 749,729 to 754,264
GFF765
GFF766 - hypothetical protein, at 754,265 to 754,780
GFF766
GFF767 - tRNA-Leu-GAG, at 754,921 to 755,007
GFF767
GFF768 - Putative formate dehydrogenase oxidoreductase protein, at 755,145 to 757,412
GFF768
Position (kb) 754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 753.271 kb on - strand, within GFF765 at 753.286 kb on - strand, within GFF765 at 753.328 kb on + strand, within GFF765 at 753.379 kb on + strand, within GFF765 at 753.387 kb on - strand, within GFF765 at 753.411 kb on + strand, within GFF765 at 753.448 kb on - strand, within GFF765 at 753.450 kb on + strand, within GFF765 at 753.458 kb on - strand, within GFF765 at 753.463 kb on + strand, within GFF765 at 753.493 kb on - strand, within GFF765 at 753.509 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.514 kb on + strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.522 kb on - strand, within GFF765 at 753.524 kb on - strand, within GFF765 at 753.526 kb on + strand, within GFF765 at 753.534 kb on - strand, within GFF765 at 753.553 kb on - strand, within GFF765 at 753.559 kb on + strand, within GFF765 at 753.567 kb on - strand, within GFF765 at 753.675 kb on + strand, within GFF765 at 753.683 kb on + strand, within GFF765 at 753.683 kb on - strand, within GFF765 at 753.683 kb on - strand, within GFF765 at 753.685 kb on + strand, within GFF765 at 753.716 kb on + strand, within GFF765 at 753.716 kb on + strand, within GFF765 at 753.732 kb on + strand, within GFF765 at 753.740 kb on - strand, within GFF765 at 753.750 kb on - strand, within GFF765 at 753.775 kb on + strand, within GFF765 at 753.775 kb on + strand, within GFF765 at 753.775 kb on + strand, within GFF765 at 753.775 kb on + strand, within GFF765 at 753.776 kb on - strand, within GFF765 at 753.783 kb on - strand, within GFF765 at 753.783 kb on - strand, within GFF765 at 753.783 kb on - strand, within GFF765 at 753.783 kb on - strand, within GFF765 at 753.788 kb on - strand, within GFF765 at 753.788 kb on - strand, within GFF765 at 753.788 kb on - strand, within GFF765 at 753.800 kb on + strand, within GFF765 at 753.800 kb on + strand, within GFF765 at 753.808 kb on - strand, within GFF765 at 753.817 kb on - strand at 753.823 kb on - strand at 753.827 kb on - strand at 753.847 kb on - strand at 753.891 kb on - strand at 753.939 kb on + strand at 753.950 kb on + strand at 753.977 kb on + strand at 753.995 kb on + strand at 754.066 kb on + strand at 754.071 kb on + strand at 754.074 kb on - strand at 754.097 kb on + strand at 754.138 kb on + strand at 754.165 kb on - strand at 754.179 kb on + strand at 754.201 kb on + strand at 754.234 kb on - strand at 754.304 kb on - strand at 754.431 kb on + strand, within GFF766 at 754.436 kb on + strand, within GFF766 at 754.444 kb on - strand, within GFF766 at 754.456 kb on - strand, within GFF766 at 754.481 kb on + strand, within GFF766 at 754.497 kb on - strand, within GFF766 at 754.497 kb on - strand, within GFF766 at 754.524 kb on + strand, within GFF766 at 754.526 kb on + strand, within GFF766 at 754.531 kb on + strand, within GFF766 at 754.539 kb on + strand, within GFF766 at 754.561 kb on + strand, within GFF766 at 754.562 kb on + strand, within GFF766 at 754.569 kb on - strand, within GFF766 at 754.569 kb on - strand, within GFF766 at 754.597 kb on - strand, within GFF766 at 754.652 kb on + strand, within GFF766 at 754.660 kb on - strand, within GFF766 at 754.660 kb on - strand, within GFF766 at 754.660 kb on - strand, within GFF766 at 754.665 kb on - strand, within GFF766 at 754.665 kb on - strand, within GFF766 at 754.672 kb on - strand, within GFF766 at 754.718 kb on - strand, within GFF766 at 754.722 kb on - strand, within GFF766 at 754.722 kb on - strand, within GFF766 at 754.722 kb on - strand, within GFF766 at 754.722 kb on - strand, within GFF766 at 754.756 kb on + strand at 754.830 kb on - strand at 755.011 kb on - strand at 755.015 kb on + strand at 755.046 kb on + strand at 755.046 kb on + strand at 755.054 kb on - strand at 755.057 kb on + strand at 755.061 kb on + strand at 755.064 kb on - strand at 755.078 kb on - strand at 755.130 kb on - strand at 755.138 kb on + strand at 755.150 kb on - strand at 755.150 kb on - strand at 755.171 kb on - strand at 755.181 kb on + strand at 755.181 kb on + strand at 755.187 kb on + strand at 755.187 kb on + strand at 755.189 kb on - strand at 755.195 kb on - strand at 755.238 kb on + strand at 755.238 kb on + strand at 755.256 kb on + strand at 755.271 kb on + strand at 755.274 kb on + strand at 755.274 kb on + strand at 755.274 kb on + strand at 755.279 kb on - strand at 755.282 kb on - strand at 755.289 kb on + strand at 755.296 kb on + strand at 755.299 kb on - strand at 755.299 kb on - strand at 755.309 kb on - strand at 755.322 kb on - strand at 755.339 kb on + strand at 755.344 kb on + strand at 755.347 kb on - strand at 755.351 kb on + strand at 755.390 kb on + strand, within GFF768 at 755.396 kb on + strand, within GFF768 at 755.398 kb on + strand, within GFF768 at 755.398 kb on + strand, within GFF768 at 755.465 kb on + strand, within GFF768 at 755.559 kb on + strand, within GFF768 at 755.565 kb on + strand, within GFF768 at 755.567 kb on - strand, within GFF768 at 755.567 kb on - strand, within GFF768 at 755.571 kb on + strand, within GFF768 at 755.602 kb on + strand, within GFF768 at 755.605 kb on + strand, within GFF768 at 755.619 kb on + strand, within GFF768 at 755.629 kb on + strand, within GFF768 at 755.629 kb on + strand, within GFF768 at 755.710 kb on + strand, within GFF768 at 755.710 kb on + strand, within GFF768 at 755.710 kb on + strand, within GFF768 at 755.718 kb on - strand, within GFF768 at 755.722 kb on + strand, within GFF768 at 755.737 kb on + strand, within GFF768 at 755.737 kb on + strand, within GFF768 at 755.737 kb on + strand, within GFF768 at 755.745 kb on - strand, within GFF768 at 755.747 kb on + strand, within GFF768 at 755.747 kb on + strand, within GFF768 at 755.747 kb on + strand, within GFF768 at 755.771 kb on + strand, within GFF768 at 755.771 kb on + strand, within GFF768 at 755.774 kb on - strand, within GFF768 at 755.779 kb on - strand, within GFF768
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 753,271 - GFF765 0.78 -1.6 753,286 - GFF765 0.78 -1.2 753,328 + GFF765 0.79 -2.0 753,379 + GFF765 0.80 -2.5 753,387 - GFF765 0.81 -0.8 753,411 + GFF765 0.81 -0.6 753,448 - GFF765 0.82 -1.4 753,450 + GFF765 0.82 -2.7 753,458 - GFF765 0.82 -1.7 753,463 + GFF765 0.82 -2.9 753,493 - GFF765 0.83 +0.2 753,509 + GFF765 0.83 -2.9 753,514 + GFF765 0.83 -2.5 753,514 + GFF765 0.83 -3.1 753,514 + GFF765 0.83 -3.6 753,514 + GFF765 0.83 -1.1 753,514 + GFF765 0.83 +1.8 753,514 + GFF765 0.83 -1.2 753,514 + GFF765 0.83 +0.9 753,522 - GFF765 0.84 -2.1 753,522 - GFF765 0.84 -1.7 753,522 - GFF765 0.84 -1.0 753,522 - GFF765 0.84 -1.1 753,522 - GFF765 0.84 -2.0 753,522 - GFF765 0.84 -1.5 753,522 - GFF765 0.84 -2.4 753,524 - GFF765 0.84 +1.1 753,526 + GFF765 0.84 +1.8 753,534 - GFF765 0.84 -0.8 753,553 - GFF765 0.84 -1.7 753,559 + GFF765 0.84 -2.0 753,567 - GFF765 0.85 +0.0 753,675 + GFF765 0.87 -3.2 753,683 + GFF765 0.87 -2.5 753,683 - GFF765 0.87 -1.9 753,683 - GFF765 0.87 -1.4 753,685 + GFF765 0.87 -2.0 753,716 + GFF765 0.88 -1.2 753,716 + GFF765 0.88 -1.3 753,732 + GFF765 0.88 -1.4 753,740 - GFF765 0.88 +0.2 753,750 - GFF765 0.89 -1.4 753,775 + GFF765 0.89 -2.1 753,775 + GFF765 0.89 -2.9 753,775 + GFF765 0.89 -2.4 753,775 + GFF765 0.89 -2.8 753,776 - GFF765 0.89 -2.0 753,783 - GFF765 0.89 -1.4 753,783 - GFF765 0.89 -2.4 753,783 - GFF765 0.89 +0.2 753,783 - GFF765 0.89 -1.2 753,788 - GFF765 0.89 -1.0 753,788 - GFF765 0.89 -1.1 753,788 - GFF765 0.89 -1.5 753,800 + GFF765 0.90 -1.9 753,800 + GFF765 0.90 -0.7 753,808 - GFF765 0.90 -1.9 753,817 - -2.0 753,823 - -1.6 753,827 - -3.3 753,847 - -1.8 753,891 - -3.7 753,939 + -3.6 753,950 + -0.3 753,977 + -1.7 753,995 + -1.2 754,066 + -2.4 754,071 + -0.4 754,074 - -0.5 754,097 + -0.7 754,138 + -1.7 754,165 - -1.0 754,179 + -1.5 754,201 + -1.6 754,234 - -1.5 754,304 - +0.9 754,431 + GFF766 0.32 +1.4 754,436 + GFF766 0.33 +1.0 754,444 - GFF766 0.35 -0.9 754,456 - GFF766 0.37 -0.3 754,481 + GFF766 0.42 -0.5 754,497 - GFF766 0.45 +0.4 754,497 - GFF766 0.45 +0.3 754,524 + GFF766 0.50 -0.7 754,526 + GFF766 0.51 -1.9 754,531 + GFF766 0.52 -1.8 754,539 + GFF766 0.53 +0.6 754,561 + GFF766 0.57 +0.8 754,562 + GFF766 0.58 +0.6 754,569 - GFF766 0.59 -0.2 754,569 - GFF766 0.59 -0.1 754,597 - GFF766 0.64 -1.2 754,652 + GFF766 0.75 -2.9 754,660 - GFF766 0.77 -0.8 754,660 - GFF766 0.77 +0.3 754,660 - GFF766 0.77 +0.6 754,665 - GFF766 0.78 -1.3 754,665 - GFF766 0.78 +0.2 754,672 - GFF766 0.79 +0.4 754,718 - GFF766 0.88 -0.2 754,722 - GFF766 0.89 -0.3 754,722 - GFF766 0.89 -0.9 754,722 - GFF766 0.89 -0.0 754,722 - GFF766 0.89 +0.1 754,756 + -1.7 754,830 - +1.2 755,011 - +0.0 755,015 + -0.9 755,046 + -0.0 755,046 + +0.3 755,054 - +0.0 755,057 + +1.0 755,061 + -0.2 755,064 - +0.3 755,078 - -1.8 755,130 - -0.2 755,138 + +0.7 755,150 - -0.3 755,150 - -0.9 755,171 - -0.4 755,181 + -1.4 755,181 + +0.6 755,187 + -1.9 755,187 + +0.0 755,189 - -0.3 755,195 - -0.3 755,238 + -0.1 755,238 + -0.2 755,256 + +0.5 755,271 + -0.6 755,274 + -2.2 755,274 + -1.2 755,274 + +0.2 755,279 - -2.4 755,282 - -1.0 755,289 + -1.2 755,296 + +1.2 755,299 - +1.1 755,299 - +0.0 755,309 - -1.2 755,322 - +2.0 755,339 + -0.7 755,344 + -2.1 755,347 - -0.6 755,351 + +1.5 755,390 + GFF768 0.11 -0.3 755,396 + GFF768 0.11 -0.4 755,398 + GFF768 0.11 +0.1 755,398 + GFF768 0.11 +1.0 755,465 + GFF768 0.14 +1.0 755,559 + GFF768 0.18 +1.6 755,565 + GFF768 0.19 -0.7 755,567 - GFF768 0.19 -0.8 755,567 - GFF768 0.19 +1.1 755,571 + GFF768 0.19 -0.5 755,602 + GFF768 0.20 +0.0 755,605 + GFF768 0.20 +1.0 755,619 + GFF768 0.21 +0.5 755,629 + GFF768 0.21 -0.3 755,629 + GFF768 0.21 +0.0 755,710 + GFF768 0.25 +0.0 755,710 + GFF768 0.25 +2.1 755,710 + GFF768 0.25 -0.8 755,718 - GFF768 0.25 +0.1 755,722 + GFF768 0.25 -0.6 755,737 + GFF768 0.26 +2.7 755,737 + GFF768 0.26 -1.4 755,737 + GFF768 0.26 +0.2 755,745 - GFF768 0.26 +1.0 755,747 + GFF768 0.27 -1.6 755,747 + GFF768 0.27 -1.3 755,747 + GFF768 0.27 -1.2 755,771 + GFF768 0.28 +0.5 755,771 + GFF768 0.28 +0.2 755,774 - GFF768 0.28 -1.3 755,779 - GFF768 0.28 -0.6
Or see this region's nucleotide sequence