Strain Fitness in Sphingobium sp. HT1-2 around GFF668

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF666 and GFF667 overlap by 4 nucleotidesGFF667 and GFF668 are separated by 65 nucleotidesGFF668 and GFF669 are separated by 94 nucleotides GFF666 - hypothetical protein, at 663,341 to 663,769 GFF666 GFF667 - Hypothetical metal-binding enzyme, YcbL homolog, at 663,766 to 664,422 GFF667 GFF668 - Rrf2 family transcriptional regulator, at 664,488 to 664,913 GFF668 GFF669 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 665,008 to 666,054 GFF669 Position (kb) 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 663.555 kb on + strand, within GFF666at 663.555 kb on + strand, within GFF666at 663.581 kb on + strand, within GFF666at 663.596 kb on - strand, within GFF666at 663.615 kb on + strand, within GFF666at 663.623 kb on - strand, within GFF666at 663.709 kb on + strand, within GFF666at 663.711 kb on + strand, within GFF666at 663.746 kb on + strandat 663.783 kb on + strandat 663.876 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.952 kb on - strand, within GFF667at 663.952 kb on - strand, within GFF667at 663.957 kb on - strand, within GFF667at 663.990 kb on + strand, within GFF667at 663.999 kb on - strand, within GFF667at 664.013 kb on - strand, within GFF667at 664.017 kb on + strand, within GFF667at 664.025 kb on - strand, within GFF667at 664.035 kb on + strand, within GFF667at 664.035 kb on - strand, within GFF667at 664.045 kb on - strand, within GFF667at 664.055 kb on + strand, within GFF667at 664.070 kb on + strand, within GFF667at 664.092 kb on + strand, within GFF667at 664.114 kb on + strand, within GFF667at 664.114 kb on + strand, within GFF667at 664.115 kb on + strand, within GFF667at 664.123 kb on - strand, within GFF667at 664.148 kb on + strand, within GFF667at 664.209 kb on - strand, within GFF667at 664.209 kb on - strand, within GFF667at 664.218 kb on + strand, within GFF667at 664.227 kb on + strand, within GFF667at 664.236 kb on + strand, within GFF667at 664.240 kb on - strand, within GFF667at 664.273 kb on + strand, within GFF667at 664.276 kb on - strand, within GFF667at 664.278 kb on + strand, within GFF667at 664.281 kb on - strand, within GFF667at 664.281 kb on - strand, within GFF667at 664.299 kb on - strand, within GFF667at 664.343 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.357 kb on - strandat 664.357 kb on - strandat 664.357 kb on - strandat 664.390 kb on + strandat 664.397 kb on - strandat 664.408 kb on - strandat 664.408 kb on - strandat 664.460 kb on - strandat 664.486 kb on + strandat 664.490 kb on + strandat 664.490 kb on + strandat 664.490 kb on + strandat 664.491 kb on + strandat 664.491 kb on + strandat 664.497 kb on + strandat 664.497 kb on + strandat 664.522 kb on + strandat 664.523 kb on + strandat 664.523 kb on + strandat 664.523 kb on + strandat 664.533 kb on + strand, within GFF668at 664.549 kb on - strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.573 kb on + strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.583 kb on + strand, within GFF668at 664.654 kb on - strand, within GFF668at 664.681 kb on - strand, within GFF668at 664.690 kb on + strand, within GFF668at 664.703 kb on - strand, within GFF668at 664.718 kb on + strand, within GFF668at 664.747 kb on + strand, within GFF668at 664.755 kb on - strand, within GFF668at 664.781 kb on + strand, within GFF668at 664.869 kb on + strand, within GFF668at 664.917 kb on - strandat 664.917 kb on - strandat 664.922 kb on - strandat 664.927 kb on - strandat 664.935 kb on + strandat 664.960 kb on + strandat 664.963 kb on + strandat 664.963 kb on + strandat 664.971 kb on - strandat 664.971 kb on - strandat 665.006 kb on + strandat 665.006 kb on + strandat 665.006 kb on + strandat 665.006 kb on + strandat 665.011 kb on + strandat 665.014 kb on - strandat 665.023 kb on + strandat 665.026 kb on - strandat 665.031 kb on - strandat 665.031 kb on - strandat 665.031 kb on - strandat 665.031 kb on - strandat 665.031 kb on - strandat 665.031 kb on - strandat 665.148 kb on - strand, within GFF669at 665.335 kb on + strand, within GFF669at 665.374 kb on - strand, within GFF669at 665.404 kb on + strand, within GFF669at 665.460 kb on + strand, within GFF669at 665.464 kb on + strand, within GFF669at 665.467 kb on - strand, within GFF669at 665.496 kb on + strand, within GFF669at 665.599 kb on - strand, within GFF669at 665.628 kb on - strand, within GFF669at 665.628 kb on - strand, within GFF669at 665.630 kb on + strand, within GFF669at 665.631 kb on + strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.639 kb on - strand, within GFF669at 665.660 kb on - strand, within GFF669at 665.679 kb on - strand, within GFF669at 665.688 kb on + strand, within GFF669at 665.713 kb on + strand, within GFF669at 665.847 kb on + strand, within GFF669at 665.852 kb on + strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.876 kb on - strand, within GFF669

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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663,555 + GFF666 0.50 -0.1
663,555 + GFF666 0.50 -0.3
663,581 + GFF666 0.56 +1.2
663,596 - GFF666 0.59 +1.1
663,615 + GFF666 0.64 -0.3
663,623 - GFF666 0.66 -0.3
663,709 + GFF666 0.86 -1.8
663,711 + GFF666 0.86 -0.5
663,746 + -1.1
663,783 + -1.6
663,876 + GFF667 0.17 -1.6
663,944 + GFF667 0.27 -0.1
663,944 + GFF667 0.27 +0.5
663,944 + GFF667 0.27 -0.7
663,952 - GFF667 0.28 +1.9
663,952 - GFF667 0.28 +0.0
663,957 - GFF667 0.29 +1.5
663,990 + GFF667 0.34 -1.9
663,999 - GFF667 0.35 +1.0
664,013 - GFF667 0.38 -0.5
664,017 + GFF667 0.38 +0.6
664,025 - GFF667 0.39 +0.4
664,035 + GFF667 0.41 -0.3
664,035 - GFF667 0.41 -1.1
664,045 - GFF667 0.42 -0.3
664,055 + GFF667 0.44 +0.3
664,070 + GFF667 0.46 -1.0
664,092 + GFF667 0.50 -1.9
664,114 + GFF667 0.53 -2.5
664,114 + GFF667 0.53 +1.0
664,115 + GFF667 0.53 -1.1
664,123 - GFF667 0.54 -1.0
664,148 + GFF667 0.58 +0.8
664,209 - GFF667 0.67 -0.3
664,209 - GFF667 0.67 -1.1
664,218 + GFF667 0.69 +0.6
664,227 + GFF667 0.70 +0.2
664,236 + GFF667 0.72 +0.3
664,240 - GFF667 0.72 -1.0
664,273 + GFF667 0.77 +0.9
664,276 - GFF667 0.78 -0.4
664,278 + GFF667 0.78 -0.3
664,281 - GFF667 0.78 +0.2
664,281 - GFF667 0.78 +0.3
664,299 - GFF667 0.81 -1.4
664,343 + GFF667 0.88 +1.0
664,349 + GFF667 0.89 -1.0
664,349 + GFF667 0.89 +0.5
664,349 + GFF667 0.89 +0.8
664,351 + GFF667 0.89 -0.9
664,351 + GFF667 0.89 +0.7
664,351 + GFF667 0.89 +1.2
664,357 - +0.3
664,357 - -0.5
664,357 - +0.1
664,390 + -1.1
664,397 - +0.8
664,408 - -1.2
664,408 - +1.5
664,460 - -1.6
664,486 + -0.5
664,490 + +2.0
664,490 + +0.5
664,490 + +0.5
664,491 + -2.3
664,491 + -1.4
664,497 + -0.4
664,497 + -0.6
664,522 + +0.2
664,523 + -1.3
664,523 + -0.7
664,523 + +0.8
664,533 + GFF668 0.11 -0.2
664,549 - GFF668 0.14 -0.3
664,568 + GFF668 0.19 -1.8
664,568 + GFF668 0.19 -0.2
664,568 + GFF668 0.19 -0.8
664,568 + GFF668 0.19 -0.1
664,573 + GFF668 0.20 -2.9
664,576 - GFF668 0.21 -2.3
664,576 - GFF668 0.21 -1.8
664,576 - GFF668 0.21 +0.5
664,576 - GFF668 0.21 -1.1
664,576 - GFF668 0.21 -0.2
664,583 + GFF668 0.22 -0.8
664,654 - GFF668 0.39 +0.1
664,681 - GFF668 0.45 -0.4
664,690 + GFF668 0.47 -0.7
664,703 - GFF668 0.50 -1.2
664,718 + GFF668 0.54 -0.1
664,747 + GFF668 0.61 +1.7
664,755 - GFF668 0.63 -0.1
664,781 + GFF668 0.69 +1.3
664,869 + GFF668 0.89 -1.5
664,917 - +0.5
664,917 - +0.3
664,922 - +0.2
664,927 - -0.1
664,935 + -2.1
664,960 + +0.2
664,963 + +0.2
664,963 + +0.8
664,971 - -0.2
664,971 - -0.5
665,006 + -0.5
665,006 + -1.0
665,006 + +0.8
665,006 + -0.6
665,011 + +0.5
665,014 - -0.8
665,023 + +1.4
665,026 - +0.4
665,031 - +0.0
665,031 - -0.3
665,031 - -2.4
665,031 - -0.3
665,031 - +0.9
665,031 - -0.5
665,148 - GFF669 0.13 -0.4
665,335 + GFF669 0.31 +1.3
665,374 - GFF669 0.35 +0.1
665,404 + GFF669 0.38 +1.5
665,460 + GFF669 0.43 +1.9
665,464 + GFF669 0.44 +0.9
665,467 - GFF669 0.44 -0.4
665,496 + GFF669 0.47 +0.4
665,599 - GFF669 0.56 -2.0
665,628 - GFF669 0.59 -0.7
665,628 - GFF669 0.59 -1.6
665,630 + GFF669 0.59 +0.3
665,631 + GFF669 0.60 -0.3
665,638 - GFF669 0.60 +0.6
665,638 - GFF669 0.60 -1.7
665,639 - GFF669 0.60 -0.3
665,660 - GFF669 0.62 -0.2
665,679 - GFF669 0.64 -1.0
665,688 + GFF669 0.65 -0.4
665,713 + GFF669 0.67 -0.5
665,847 + GFF669 0.80 +0.6
665,852 + GFF669 0.81 +0.8
665,865 - GFF669 0.82 +0.4
665,865 - GFF669 0.82 +0.3
665,865 - GFF669 0.82 -0.1
665,865 - GFF669 0.82 +0.6
665,876 - GFF669 0.83 +0.2

Or see this region's nucleotide sequence