Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF653 and GFF654 are separated by 100 nucleotides GFF654 and GFF655 are separated by 173 nucleotides GFF655 and GFF656 are separated by 187 nucleotides
GFF653 - ATP-dependent RNA helicase, at 651,459 to 652,385
GFF653
GFF654 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 652,486 to 653,163
GFF654
GFF655 - hypothetical protein, at 653,337 to 653,807
GFF655
GFF656 - Lysyl-tRNA synthetase (class I) (EC 6.1.1.6), at 653,995 to 655,575
GFF656
Position (kb) 653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.390 kb on + strand at 652.390 kb on + strand at 652.390 kb on + strand at 652.390 kb on + strand at 652.398 kb on - strand at 652.403 kb on + strand at 652.403 kb on - strand at 652.409 kb on - strand at 652.411 kb on - strand at 652.413 kb on - strand at 652.422 kb on + strand at 652.422 kb on + strand at 652.422 kb on + strand at 652.422 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.428 kb on - strand at 652.430 kb on - strand at 652.430 kb on - strand at 652.430 kb on - strand at 652.430 kb on - strand at 652.430 kb on - strand at 652.460 kb on - strand at 652.488 kb on + strand at 652.498 kb on + strand at 652.519 kb on + strand at 652.527 kb on - strand at 652.541 kb on + strand at 652.574 kb on - strand, within GFF654 at 652.644 kb on + strand, within GFF654 at 652.690 kb on + strand, within GFF654 at 652.691 kb on - strand, within GFF654 at 652.737 kb on + strand, within GFF654 at 652.749 kb on - strand, within GFF654 at 652.754 kb on - strand, within GFF654 at 652.764 kb on + strand, within GFF654 at 652.764 kb on + strand, within GFF654 at 652.764 kb on + strand, within GFF654 at 652.768 kb on + strand, within GFF654 at 652.785 kb on + strand, within GFF654 at 652.808 kb on + strand, within GFF654 at 652.811 kb on - strand, within GFF654 at 652.816 kb on - strand, within GFF654 at 652.818 kb on + strand, within GFF654 at 652.834 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.839 kb on + strand, within GFF654 at 652.841 kb on + strand, within GFF654 at 652.841 kb on + strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.847 kb on - strand, within GFF654 at 652.849 kb on - strand, within GFF654 at 652.892 kb on + strand, within GFF654 at 652.912 kb on - strand, within GFF654 at 652.914 kb on + strand, within GFF654 at 652.922 kb on - strand, within GFF654 at 652.932 kb on + strand, within GFF654 at 652.932 kb on + strand, within GFF654 at 652.945 kb on + strand, within GFF654 at 652.945 kb on + strand, within GFF654 at 652.953 kb on - strand, within GFF654 at 652.953 kb on - strand, within GFF654 at 653.032 kb on + strand, within GFF654 at 653.035 kb on - strand, within GFF654 at 653.038 kb on + strand, within GFF654 at 653.048 kb on + strand, within GFF654 at 653.050 kb on - strand, within GFF654 at 653.057 kb on - strand, within GFF654 at 653.073 kb on + strand, within GFF654 at 653.073 kb on + strand, within GFF654 at 653.073 kb on + strand, within GFF654 at 653.073 kb on + strand, within GFF654 at 653.075 kb on + strand, within GFF654 at 653.075 kb on + strand, within GFF654 at 653.075 kb on + strand, within GFF654 at 653.075 kb on + strand, within GFF654 at 653.075 kb on + strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.081 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.083 kb on - strand, within GFF654 at 653.090 kb on - strand, within GFF654 at 653.148 kb on + strand at 653.148 kb on + strand at 653.156 kb on - strand at 653.156 kb on - strand at 653.156 kb on - strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.180 kb on + strand at 653.186 kb on - strand at 653.188 kb on - strand at 653.188 kb on - strand at 653.188 kb on - strand at 653.188 kb on - strand at 653.188 kb on - strand at 653.208 kb on + strand at 653.208 kb on + strand at 653.208 kb on + strand at 653.208 kb on + strand at 653.216 kb on - strand at 653.216 kb on - strand at 653.216 kb on - strand at 653.216 kb on - strand at 653.216 kb on - strand at 653.282 kb on - strand at 653.294 kb on + strand at 653.346 kb on + strand at 653.353 kb on + strand at 653.353 kb on + strand at 653.367 kb on - strand at 653.376 kb on + strand at 653.384 kb on - strand, within GFF655 at 653.384 kb on - strand, within GFF655 at 653.397 kb on + strand, within GFF655 at 653.405 kb on - strand, within GFF655 at 653.405 kb on - strand, within GFF655 at 653.410 kb on - strand, within GFF655 at 653.436 kb on - strand, within GFF655 at 653.440 kb on + strand, within GFF655 at 653.440 kb on + strand, within GFF655 at 653.443 kb on - strand, within GFF655 at 653.445 kb on + strand, within GFF655 at 653.446 kb on - strand, within GFF655 at 653.453 kb on - strand, within GFF655 at 653.453 kb on - strand, within GFF655 at 653.453 kb on - strand, within GFF655 at 653.461 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.466 kb on + strand, within GFF655 at 653.469 kb on - strand, within GFF655 at 653.471 kb on + strand, within GFF655 at 653.471 kb on + strand, within GFF655 at 653.471 kb on + strand, within GFF655 at 653.471 kb on + strand, within GFF655 at 653.471 kb on + strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.474 kb on - strand, within GFF655 at 653.479 kb on - strand, within GFF655 at 653.479 kb on - strand, within GFF655 at 653.479 kb on - strand, within GFF655 at 653.479 kb on - strand, within GFF655 at 653.479 kb on - strand, within GFF655 at 653.484 kb on - strand, within GFF655 at 653.496 kb on + strand, within GFF655 at 653.514 kb on - strand, within GFF655 at 653.522 kb on - strand, within GFF655 at 653.522 kb on - strand, within GFF655 at 653.548 kb on + strand, within GFF655 at 653.552 kb on + strand, within GFF655 at 653.552 kb on + strand, within GFF655 at 653.594 kb on + strand, within GFF655 at 653.604 kb on - strand, within GFF655 at 653.649 kb on + strand, within GFF655 at 653.653 kb on + strand, within GFF655 at 653.653 kb on + strand, within GFF655 at 653.657 kb on - strand, within GFF655 at 653.657 kb on - strand, within GFF655 at 653.661 kb on - strand, within GFF655 at 653.661 kb on - strand, within GFF655 at 653.661 kb on - strand, within GFF655 at 653.674 kb on - strand, within GFF655 at 653.694 kb on + strand, within GFF655 at 653.694 kb on + strand, within GFF655 at 653.694 kb on + strand, within GFF655 at 653.694 kb on + strand, within GFF655 at 653.694 kb on + strand, within GFF655 at 653.702 kb on - strand, within GFF655 at 653.702 kb on - strand, within GFF655 at 653.702 kb on - strand, within GFF655 at 653.702 kb on - strand, within GFF655 at 653.728 kb on - strand, within GFF655 at 653.728 kb on - strand, within GFF655 at 653.728 kb on - strand, within GFF655 at 653.743 kb on - strand, within GFF655 at 653.750 kb on - strand, within GFF655 at 653.751 kb on - strand, within GFF655 at 653.774 kb on + strand at 653.774 kb on + strand at 653.777 kb on - strand at 653.782 kb on - strand at 653.830 kb on + strand at 653.838 kb on - strand at 653.845 kb on + strand at 653.845 kb on + strand at 653.853 kb on - strand at 653.853 kb on - strand at 653.864 kb on - strand at 653.865 kb on + strand at 653.872 kb on - strand at 653.937 kb on + strand at 653.937 kb on + strand at 653.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 652,390 + +0.1 652,390 + +0.7 652,390 + -1.8 652,390 + +0.2 652,398 - -0.3 652,403 + +1.0 652,403 - -1.1 652,409 - -2.0 652,411 - +1.1 652,413 - +0.4 652,422 + +0.5 652,422 + -0.0 652,422 + +0.4 652,422 + -0.3 652,427 + +0.7 652,427 + +0.7 652,428 - -0.1 652,430 - +0.1 652,430 - -0.5 652,430 - -1.0 652,430 - +0.8 652,430 - -1.2 652,460 - -1.3 652,488 + +0.8 652,498 + +1.6 652,519 + +1.0 652,527 - -1.9 652,541 + -0.6 652,574 - GFF654 0.13 +0.6 652,644 + GFF654 0.23 -2.0 652,690 + GFF654 0.30 -0.2 652,691 - GFF654 0.30 -1.3 652,737 + GFF654 0.37 +2.0 652,749 - GFF654 0.39 -0.0 652,754 - GFF654 0.40 -0.0 652,764 + GFF654 0.41 -1.1 652,764 + GFF654 0.41 +1.4 652,764 + GFF654 0.41 +0.0 652,768 + GFF654 0.42 -0.9 652,785 + GFF654 0.44 +0.0 652,808 + GFF654 0.47 -0.7 652,811 - GFF654 0.48 +0.0 652,816 - GFF654 0.49 -1.1 652,818 + GFF654 0.49 -0.2 652,834 + GFF654 0.51 -0.2 652,839 + GFF654 0.52 -0.2 652,839 + GFF654 0.52 -0.1 652,839 + GFF654 0.52 -1.2 652,839 + GFF654 0.52 +1.2 652,839 + GFF654 0.52 +0.1 652,839 + GFF654 0.52 +0.1 652,839 + GFF654 0.52 -1.0 652,839 + GFF654 0.52 -0.5 652,839 + GFF654 0.52 -0.5 652,839 + GFF654 0.52 -0.1 652,839 + GFF654 0.52 -0.0 652,839 + GFF654 0.52 +0.4 652,839 + GFF654 0.52 +0.5 652,839 + GFF654 0.52 +0.9 652,839 + GFF654 0.52 +1.0 652,841 + GFF654 0.52 +0.3 652,841 + GFF654 0.52 +0.4 652,847 - GFF654 0.53 +0.8 652,847 - GFF654 0.53 -0.4 652,847 - GFF654 0.53 +0.1 652,847 - GFF654 0.53 -1.1 652,847 - GFF654 0.53 -2.0 652,847 - GFF654 0.53 -2.1 652,847 - GFF654 0.53 -1.5 652,847 - GFF654 0.53 +0.6 652,847 - GFF654 0.53 -0.7 652,847 - GFF654 0.53 -1.4 652,847 - GFF654 0.53 -1.8 652,847 - GFF654 0.53 -0.1 652,847 - GFF654 0.53 -1.2 652,849 - GFF654 0.54 -0.9 652,892 + GFF654 0.60 -0.5 652,912 - GFF654 0.63 -0.1 652,914 + GFF654 0.63 -0.8 652,922 - GFF654 0.64 +1.4 652,932 + GFF654 0.66 +0.2 652,932 + GFF654 0.66 +1.2 652,945 + GFF654 0.68 +0.3 652,945 + GFF654 0.68 -0.4 652,953 - GFF654 0.69 +2.1 652,953 - GFF654 0.69 -1.4 653,032 + GFF654 0.81 -0.9 653,035 - GFF654 0.81 +0.6 653,038 + GFF654 0.81 -0.6 653,048 + GFF654 0.83 +0.0 653,050 - GFF654 0.83 -1.5 653,057 - GFF654 0.84 +0.1 653,073 + GFF654 0.87 +0.8 653,073 + GFF654 0.87 -1.4 653,073 + GFF654 0.87 -1.7 653,073 + GFF654 0.87 -0.5 653,075 + GFF654 0.87 -3.1 653,075 + GFF654 0.87 +1.0 653,075 + GFF654 0.87 -0.2 653,075 + GFF654 0.87 -1.6 653,075 + GFF654 0.87 -0.4 653,081 - GFF654 0.88 +0.2 653,081 - GFF654 0.88 -1.0 653,081 - GFF654 0.88 -0.4 653,081 - GFF654 0.88 +0.5 653,081 - GFF654 0.88 -0.2 653,081 - GFF654 0.88 -0.5 653,081 - GFF654 0.88 -0.7 653,083 - GFF654 0.88 -1.7 653,083 - GFF654 0.88 -1.7 653,083 - GFF654 0.88 -0.3 653,083 - GFF654 0.88 -0.2 653,083 - GFF654 0.88 +1.2 653,083 - GFF654 0.88 +0.6 653,083 - GFF654 0.88 +0.3 653,083 - GFF654 0.88 +0.2 653,090 - GFF654 0.89 -1.0 653,148 + -1.6 653,148 + +0.2 653,156 - -0.8 653,156 - -0.9 653,156 - +0.5 653,180 + -0.8 653,180 + -1.8 653,180 + -1.0 653,180 + -0.5 653,180 + -0.8 653,180 + -1.1 653,180 + +0.6 653,180 + -2.3 653,180 + -0.3 653,180 + -0.2 653,180 + -1.9 653,180 + +0.4 653,180 + -0.3 653,180 + -0.3 653,180 + +0.2 653,186 - +0.8 653,188 - +0.6 653,188 - +2.2 653,188 - +0.1 653,188 - +1.1 653,188 - -1.6 653,208 + -1.8 653,208 + -0.9 653,208 + +0.8 653,208 + -0.3 653,216 - -0.2 653,216 - -2.6 653,216 - -0.5 653,216 - -0.4 653,216 - -0.9 653,282 - -0.3 653,294 + +0.5 653,346 + +0.8 653,353 + +0.9 653,353 + -1.2 653,367 - -0.3 653,376 + -0.1 653,384 - GFF655 0.10 -0.7 653,384 - GFF655 0.10 +1.1 653,397 + GFF655 0.13 -0.1 653,405 - GFF655 0.14 -1.1 653,405 - GFF655 0.14 +1.4 653,410 - GFF655 0.15 +0.7 653,436 - GFF655 0.21 -0.9 653,440 + GFF655 0.22 -0.2 653,440 + GFF655 0.22 +0.1 653,443 - GFF655 0.23 -0.1 653,445 + GFF655 0.23 +0.7 653,446 - GFF655 0.23 -1.0 653,453 - GFF655 0.25 -1.5 653,453 - GFF655 0.25 -1.4 653,453 - GFF655 0.25 +1.1 653,461 + GFF655 0.26 -0.4 653,466 + GFF655 0.27 -0.7 653,466 + GFF655 0.27 +0.4 653,466 + GFF655 0.27 -0.1 653,466 + GFF655 0.27 +1.5 653,466 + GFF655 0.27 -2.3 653,466 + GFF655 0.27 +0.2 653,469 - GFF655 0.28 +1.9 653,471 + GFF655 0.28 -0.4 653,471 + GFF655 0.28 -0.5 653,471 + GFF655 0.28 -0.8 653,471 + GFF655 0.28 -1.4 653,471 + GFF655 0.28 -0.8 653,474 - GFF655 0.29 -2.2 653,474 - GFF655 0.29 -0.2 653,474 - GFF655 0.29 +1.3 653,474 - GFF655 0.29 +0.6 653,474 - GFF655 0.29 -0.5 653,474 - GFF655 0.29 -0.0 653,479 - GFF655 0.30 -0.2 653,479 - GFF655 0.30 +0.1 653,479 - GFF655 0.30 +1.1 653,479 - GFF655 0.30 +0.4 653,479 - GFF655 0.30 -0.1 653,484 - GFF655 0.31 -1.7 653,496 + GFF655 0.34 -1.3 653,514 - GFF655 0.38 -1.4 653,522 - GFF655 0.39 +0.9 653,522 - GFF655 0.39 +0.0 653,548 + GFF655 0.45 +0.5 653,552 + GFF655 0.46 -0.6 653,552 + GFF655 0.46 +0.9 653,594 + GFF655 0.55 +1.2 653,604 - GFF655 0.57 +0.8 653,649 + GFF655 0.66 +1.2 653,653 + GFF655 0.67 -0.3 653,653 + GFF655 0.67 -0.7 653,657 - GFF655 0.68 +0.0 653,657 - GFF655 0.68 -0.3 653,661 - GFF655 0.69 -1.3 653,661 - GFF655 0.69 +0.9 653,661 - GFF655 0.69 +1.7 653,674 - GFF655 0.72 -1.8 653,694 + GFF655 0.76 +0.2 653,694 + GFF655 0.76 -0.3 653,694 + GFF655 0.76 +0.4 653,694 + GFF655 0.76 +1.6 653,694 + GFF655 0.76 -1.2 653,702 - GFF655 0.77 -0.6 653,702 - GFF655 0.77 +1.2 653,702 - GFF655 0.77 +0.6 653,702 - GFF655 0.77 -2.0 653,728 - GFF655 0.83 -2.8 653,728 - GFF655 0.83 +0.8 653,728 - GFF655 0.83 -0.1 653,743 - GFF655 0.86 -1.2 653,750 - GFF655 0.88 -0.9 653,751 - GFF655 0.88 -1.7 653,774 + +0.2 653,774 + -0.1 653,777 - -0.2 653,782 - +1.0 653,830 + +0.8 653,838 - +0.9 653,845 + +0.3 653,845 + +0.0 653,853 - -1.0 653,853 - -1.2 653,864 - -0.7 653,865 + -0.8 653,872 - -2.9 653,937 + -0.3 653,937 + +1.2 653,945 - -1.5
Or see this region's nucleotide sequence