Strain Fitness in Sphingobium sp. HT1-2 around GFF627

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF626 and GFF627 are separated by 7 nucleotidesGFF627 and GFF628 are separated by 179 nucleotidesGFF628 and GFF629 are separated by 24 nucleotides GFF626 - Efflux ABC transporter, permease/ATP-binding protein, at 624,469 to 626,193 GFF626 GFF627 - hypothetical protein, at 626,201 to 626,524 GFF627 GFF628 - Biopolymer transport protein ExbD/TolR, at 626,704 to 627,126 GFF628 GFF629 - Biopolymer transport protein ExbD/TolR, at 627,151 to 627,639 GFF629 Position (kb) 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 625.218 kb on + strand, within GFF626at 625.282 kb on + strand, within GFF626at 625.311 kb on + strand, within GFF626at 625.319 kb on - strand, within GFF626at 625.370 kb on + strand, within GFF626at 625.370 kb on + strand, within GFF626at 625.370 kb on + strand, within GFF626at 625.387 kb on - strand, within GFF626at 625.440 kb on + strand, within GFF626at 625.448 kb on - strand, within GFF626at 625.478 kb on + strand, within GFF626at 625.484 kb on + strand, within GFF626at 625.492 kb on - strand, within GFF626at 625.493 kb on + strand, within GFF626at 625.501 kb on - strand, within GFF626at 625.507 kb on + strand, within GFF626at 625.507 kb on + strand, within GFF626at 625.507 kb on + strand, within GFF626at 625.529 kb on + strand, within GFF626at 625.529 kb on + strand, within GFF626at 625.529 kb on + strand, within GFF626at 625.529 kb on + strand, within GFF626at 625.537 kb on - strand, within GFF626at 625.537 kb on - strand, within GFF626at 625.540 kb on + strand, within GFF626at 625.557 kb on + strand, within GFF626at 625.565 kb on - strand, within GFF626at 625.588 kb on - strand, within GFF626at 625.590 kb on + strand, within GFF626at 625.605 kb on + strand, within GFF626at 625.608 kb on - strand, within GFF626at 625.611 kb on - strand, within GFF626at 625.624 kb on - strand, within GFF626at 625.624 kb on - strand, within GFF626at 625.626 kb on + strand, within GFF626at 625.633 kb on + strand, within GFF626at 625.634 kb on - strand, within GFF626at 625.634 kb on - strand, within GFF626at 625.638 kb on + strand, within GFF626at 625.644 kb on - strand, within GFF626at 625.675 kb on + strand, within GFF626at 625.675 kb on + strand, within GFF626at 625.678 kb on - strand, within GFF626at 625.678 kb on - strand, within GFF626at 625.678 kb on - strand, within GFF626at 625.700 kb on - strand, within GFF626at 625.702 kb on + strand, within GFF626at 625.702 kb on + strand, within GFF626at 625.707 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.719 kb on - strand, within GFF626at 625.779 kb on + strand, within GFF626at 625.779 kb on + strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.792 kb on - strand, within GFF626at 625.807 kb on + strand, within GFF626at 625.813 kb on + strand, within GFF626at 625.815 kb on - strand, within GFF626at 625.830 kb on + strand, within GFF626at 625.838 kb on - strand, within GFF626at 625.838 kb on - strand, within GFF626at 625.845 kb on - strand, within GFF626at 625.845 kb on - strand, within GFF626at 625.855 kb on + strand, within GFF626at 625.855 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.873 kb on - strand, within GFF626at 625.873 kb on - strand, within GFF626at 625.880 kb on - strand, within GFF626at 625.915 kb on + strand, within GFF626at 625.915 kb on + strand, within GFF626at 625.917 kb on + strand, within GFF626at 625.923 kb on - strand, within GFF626at 625.925 kb on - strand, within GFF626at 625.925 kb on - strand, within GFF626at 625.928 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.994 kb on - strand, within GFF626at 625.994 kb on - strand, within GFF626at 625.994 kb on - strand, within GFF626at 626.004 kb on - strand, within GFF626at 626.011 kb on + strand, within GFF626at 626.054 kb on - strandat 626.054 kb on - strandat 626.068 kb on + strandat 626.124 kb on + strandat 626.152 kb on + strandat 626.160 kb on - strandat 626.162 kb on - strandat 626.179 kb on + strandat 626.217 kb on - strandat 626.217 kb on - strandat 626.222 kb on - strandat 626.251 kb on - strand, within GFF627at 626.252 kb on - strand, within GFF627at 626.268 kb on + strand, within GFF627at 626.276 kb on - strand, within GFF627at 626.322 kb on + strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.327 kb on + strand, within GFF627at 626.332 kb on + strand, within GFF627at 626.337 kb on + strand, within GFF627at 626.340 kb on - strand, within GFF627at 626.357 kb on + strand, within GFF627at 626.373 kb on - strand, within GFF627at 626.373 kb on - strand, within GFF627at 626.380 kb on + strand, within GFF627at 626.380 kb on + strand, within GFF627at 626.426 kb on + strand, within GFF627at 626.426 kb on + strand, within GFF627at 626.431 kb on + strand, within GFF627at 626.434 kb on - strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.463 kb on + strand, within GFF627at 626.464 kb on - strand, within GFF627at 626.464 kb on - strand, within GFF627at 626.466 kb on - strand, within GFF627at 626.509 kb on + strandat 626.517 kb on - strandat 626.517 kb on - strandat 626.526 kb on + strandat 626.533 kb on - strandat 626.534 kb on - strandat 626.534 kb on - strandat 626.541 kb on + strandat 626.551 kb on + strandat 626.559 kb on - strandat 626.565 kb on + strandat 626.565 kb on + strandat 626.569 kb on + strandat 626.623 kb on + strandat 626.623 kb on + strandat 626.636 kb on - strandat 626.671 kb on + strandat 626.679 kb on - strandat 626.679 kb on - strandat 626.686 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.713 kb on + strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 627.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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625,218 + GFF626 0.43 -1.5
625,282 + GFF626 0.47 +1.1
625,311 + GFF626 0.49 +0.8
625,319 - GFF626 0.49 -2.5
625,370 + GFF626 0.52 +0.0
625,370 + GFF626 0.52 -0.7
625,370 + GFF626 0.52 +0.8
625,387 - GFF626 0.53 -0.7
625,440 + GFF626 0.56 -0.3
625,448 - GFF626 0.57 -0.5
625,478 + GFF626 0.58 -1.0
625,484 + GFF626 0.59 -3.2
625,492 - GFF626 0.59 -1.6
625,493 + GFF626 0.59 -1.3
625,501 - GFF626 0.60 +0.5
625,507 + GFF626 0.60 +0.2
625,507 + GFF626 0.60 -1.2
625,507 + GFF626 0.60 -1.0
625,529 + GFF626 0.61 -2.6
625,529 + GFF626 0.61 -0.0
625,529 + GFF626 0.61 -0.1
625,529 + GFF626 0.61 -0.1
625,537 - GFF626 0.62 -1.5
625,537 - GFF626 0.62 +0.0
625,540 + GFF626 0.62 +0.7
625,557 + GFF626 0.63 -2.8
625,565 - GFF626 0.64 -1.3
625,588 - GFF626 0.65 -1.1
625,590 + GFF626 0.65 -0.3
625,605 + GFF626 0.66 -0.6
625,608 - GFF626 0.66 +0.6
625,611 - GFF626 0.66 -0.8
625,624 - GFF626 0.67 -0.3
625,624 - GFF626 0.67 +0.0
625,626 + GFF626 0.67 -0.5
625,633 + GFF626 0.67 -2.2
625,634 - GFF626 0.68 -1.1
625,634 - GFF626 0.68 -1.6
625,638 + GFF626 0.68 +0.2
625,644 - GFF626 0.68 -0.2
625,675 + GFF626 0.70 -0.8
625,675 + GFF626 0.70 +0.7
625,678 - GFF626 0.70 +0.6
625,678 - GFF626 0.70 -1.1
625,678 - GFF626 0.70 -0.6
625,700 - GFF626 0.71 -1.2
625,702 + GFF626 0.71 +1.3
625,702 + GFF626 0.71 -1.3
625,707 - GFF626 0.72 -1.3
625,710 - GFF626 0.72 +0.1
625,710 - GFF626 0.72 -0.6
625,710 - GFF626 0.72 -1.6
625,710 - GFF626 0.72 -1.5
625,719 - GFF626 0.72 -2.2
625,779 + GFF626 0.76 -0.2
625,779 + GFF626 0.76 +0.8
625,787 - GFF626 0.76 -1.1
625,787 - GFF626 0.76 -0.2
625,787 - GFF626 0.76 +0.0
625,787 - GFF626 0.76 -0.6
625,792 - GFF626 0.77 -3.0
625,807 + GFF626 0.78 +1.7
625,813 + GFF626 0.78 +0.9
625,815 - GFF626 0.78 -0.5
625,830 + GFF626 0.79 -1.2
625,838 - GFF626 0.79 +0.8
625,838 - GFF626 0.79 -0.5
625,845 - GFF626 0.80 -0.3
625,845 - GFF626 0.80 -0.3
625,855 + GFF626 0.80 -1.0
625,855 + GFF626 0.80 +1.5
625,865 + GFF626 0.81 +1.1
625,865 + GFF626 0.81 -0.3
625,865 + GFF626 0.81 -1.4
625,872 + GFF626 0.81 +1.2
625,872 + GFF626 0.81 +0.6
625,872 + GFF626 0.81 -1.1
625,873 - GFF626 0.81 -0.3
625,873 - GFF626 0.81 +1.4
625,880 - GFF626 0.82 -0.0
625,915 + GFF626 0.84 -0.6
625,915 + GFF626 0.84 +0.0
625,917 + GFF626 0.84 -1.5
625,923 - GFF626 0.84 -0.1
625,925 - GFF626 0.84 +0.5
625,925 - GFF626 0.84 -0.2
625,928 + GFF626 0.85 -0.2
625,986 + GFF626 0.88 +0.0
625,986 + GFF626 0.88 -0.3
625,986 + GFF626 0.88 -1.0
625,986 + GFF626 0.88 -1.1
625,986 + GFF626 0.88 -0.6
625,986 + GFF626 0.88 -1.6
625,994 - GFF626 0.88 -1.9
625,994 - GFF626 0.88 -0.7
625,994 - GFF626 0.88 +0.2
626,004 - GFF626 0.89 -1.1
626,011 + GFF626 0.89 +1.7
626,054 - -0.2
626,054 - -1.4
626,068 + -1.6
626,124 + -1.3
626,152 + +1.4
626,160 - -0.2
626,162 - -1.7
626,179 + -1.4
626,217 - -0.1
626,217 - -1.3
626,222 - -1.1
626,251 - GFF627 0.15 -0.3
626,252 - GFF627 0.16 +0.2
626,268 + GFF627 0.21 -0.0
626,276 - GFF627 0.23 +1.3
626,322 + GFF627 0.37 -0.1
626,325 - GFF627 0.38 +2.2
626,325 - GFF627 0.38 -0.4
626,325 - GFF627 0.38 -2.2
626,327 + GFF627 0.39 -1.6
626,332 + GFF627 0.40 -1.1
626,337 + GFF627 0.42 +0.0
626,340 - GFF627 0.43 -2.0
626,357 + GFF627 0.48 -0.9
626,373 - GFF627 0.53 -1.4
626,373 - GFF627 0.53 +0.2
626,380 + GFF627 0.55 +0.0
626,380 + GFF627 0.55 +0.4
626,426 + GFF627 0.69 -0.1
626,426 + GFF627 0.69 +1.1
626,431 + GFF627 0.71 -1.2
626,434 - GFF627 0.72 -1.2
626,446 + GFF627 0.76 -1.2
626,446 + GFF627 0.76 -0.4
626,446 + GFF627 0.76 +0.5
626,454 - GFF627 0.78 -2.2
626,454 - GFF627 0.78 -1.3
626,454 - GFF627 0.78 -0.2
626,454 - GFF627 0.78 +0.4
626,454 - GFF627 0.78 -1.3
626,456 + GFF627 0.79 -0.5
626,456 + GFF627 0.79 -0.8
626,456 + GFF627 0.79 -0.7
626,463 + GFF627 0.81 -0.4
626,464 - GFF627 0.81 +0.5
626,464 - GFF627 0.81 +0.8
626,466 - GFF627 0.82 -1.9
626,509 + +0.2
626,517 - +0.4
626,517 - -0.8
626,526 + -1.0
626,533 - -0.7
626,534 - -1.4
626,534 - +0.6
626,541 + -0.4
626,551 + -2.0
626,559 - +0.2
626,565 + +0.5
626,565 + -1.3
626,569 + -0.5
626,623 + -0.8
626,623 + -2.0
626,636 - +0.4
626,671 + -0.7
626,679 - +0.3
626,679 - +0.2
626,686 + +0.3
626,711 + -0.2
626,711 + -1.1
626,711 + +0.4
626,711 + -1.7
626,711 + -0.1
626,711 + +0.2
626,711 + -0.4
626,711 + -0.5
626,713 + -1.9
626,719 - -1.1
626,719 - +1.1
626,719 - -1.1
626,719 - -0.9
626,719 - -0.2
627,138 - -2.1

Or see this region's nucleotide sequence