Strain Fitness in Sphingobium sp. HT1-2 around GFF5407

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,381,349	+		GFF5405	0.33	+0.3
5,381,354	+		GFF5405	0.34	-0.5
5,381,356	-		GFF5405	0.35	-0.8
5,381,392	-		GFF5405	0.41	-0.0
5,381,392	-		GFF5405	0.41	-0.3
5,381,402	-		GFF5405	0.42	-0.7
5,381,432	+		GFF5405	0.47	+0.5
5,381,442	+		GFF5405	0.49	+0.4
5,381,446	+		GFF5405	0.50	-0.8
5,381,449	-		GFF5405	0.50	-0.1
5,381,449	-		GFF5405	0.50	-0.1
5,381,449	-		GFF5405	0.50	+0.9
5,381,449	-		GFF5405	0.50	-0.2
5,381,449	-		GFF5405	0.50	+0.1
5,381,454	-		GFF5405	0.51	-1.0
5,381,454	-		GFF5405	0.51	-1.5
5,381,478	+		GFF5405	0.55	+0.7
5,381,479	-		GFF5405	0.55	+0.4
5,381,507	-		GFF5405	0.60	-1.3
5,381,514	+		GFF5405	0.61	-2.7
5,381,522	-		GFF5405	0.63	-2.5
5,381,599	-		GFF5405	0.76	+1.0
5,381,617	-		GFF5405	0.79	-0.8
5,381,639	+		GFF5405	0.83	-0.0
5,381,660	-		GFF5405	0.86	+0.4
5,381,680	+		GFF5405	0.90	-0.1
5,381,680	+		GFF5405	0.90	-1.0
5,381,680	+		GFF5405	0.90	-1.2
5,381,680	+		GFF5405	0.90	+0.5
5,381,688	-				-0.6
5,381,688	-				-1.8
5,381,688	-				-0.2
5,381,705	+				-0.4
5,381,710	+				-0.5
5,381,718	-				+1.1
5,381,720	-				-1.0
5,381,728	+				+0.4
5,381,732	+				+0.2
5,381,774	+				+0.0
5,381,779	+				+0.2
5,381,787	-				-0.1
5,381,792	+				-0.9
5,381,792	+				-1.8
5,381,800	-				-0.6
5,381,823	-				-0.2
5,381,836	+				-1.7
5,381,850	+				-1.7
5,381,850	+				+0.4
5,381,850	+				+1.0
5,381,855	+				-1.0
5,381,864	+				-0.8
5,381,870	-				-0.4
5,381,873	-				-1.9
5,381,880	+				+0.2
5,381,903	+				-1.1
5,381,911	-				-1.8
5,381,913	+				+0.0
5,381,919	-				+0.0
5,381,929	-				+0.1
5,381,976	+				+0.5
5,381,976	+				+0.1
5,381,992	+		GFF5406	0.12	+1.1
5,381,992	+		GFF5406	0.12	+0.1
5,381,992	+		GFF5406	0.12	-1.1
5,381,992	+		GFF5406	0.12	-1.6
5,381,992	+		GFF5406	0.12	-1.3
5,381,999	-		GFF5406	0.14	-1.1
5,382,000	-		GFF5406	0.14	-2.3
5,382,000	-		GFF5406	0.14	-0.8
5,382,000	-		GFF5406	0.14	+0.6
5,382,017	-		GFF5406	0.19	-1.3
5,382,068	+		GFF5406	0.31	+0.2
5,382,069	-		GFF5406	0.32	-0.7
5,382,070	+		GFF5406	0.32	-1.8
5,382,070	+		GFF5406	0.32	-3.2
5,382,076	-		GFF5406	0.33	+0.4
5,382,078	-		GFF5406	0.34	-0.9
5,382,078	-		GFF5406	0.34	-0.1
5,382,097	+		GFF5406	0.39	-0.4
5,382,097	+		GFF5406	0.39	-1.6
5,382,097	+		GFF5406	0.39	+0.7
5,382,100	+		GFF5406	0.39	-0.2
5,382,100	-		GFF5406	0.39	-1.0
5,382,105	-		GFF5406	0.41	-0.6
5,382,105	-		GFF5406	0.41	+1.3
5,382,105	-		GFF5406	0.41	-3.5
5,382,106	+		GFF5406	0.41	-0.1
5,382,107	+		GFF5406	0.41	-1.5
5,382,107	+		GFF5406	0.41	-0.5
5,382,107	+		GFF5406	0.41	+0.1
5,382,107	+		GFF5406	0.41	-0.3
5,382,107	+		GFF5406	0.41	-0.6
5,382,107	+		GFF5406	0.41	-0.3
5,382,107	+		GFF5406	0.41	+0.8
5,382,107	+		GFF5406	0.41	-0.5
5,382,110	+		GFF5406	0.42	-0.7
5,382,110	-		GFF5406	0.42	-0.5
5,382,112	+		GFF5406	0.42	-1.6
5,382,112	+		GFF5406	0.42	-3.0
5,382,112	+		GFF5406	0.42	-1.3
5,382,114	-		GFF5406	0.43	-0.6
5,382,115	-		GFF5406	0.43	+0.8
5,382,115	-		GFF5406	0.43	-1.7
5,382,115	-		GFF5406	0.43	+0.3
5,382,115	-		GFF5406	0.43	+0.0
5,382,116	-		GFF5406	0.43	-2.7
5,382,131	+		GFF5406	0.47	-1.9
5,382,131	+		GFF5406	0.47	-0.6
5,382,139	-		GFF5406	0.49	-2.5
5,382,139	-		GFF5406	0.49	-0.3
5,382,139	-		GFF5406	0.49	-1.9
5,382,139	-		GFF5406	0.49	-1.5
5,382,139	-		GFF5406	0.49	-1.5
5,382,141	-		GFF5406	0.50	-1.1
5,382,149	-		GFF5406	0.51	-1.3
5,382,151	+		GFF5406	0.52	-1.0
5,382,151	+		GFF5406	0.52	-0.2
5,382,151	+		GFF5406	0.52	+0.4
5,382,151	+		GFF5406	0.52	-0.4
5,382,159	-		GFF5406	0.54	+0.7
5,382,160	-		GFF5406	0.54	+1.1
5,382,182	-		GFF5406	0.60	-0.0
5,382,183	-		GFF5406	0.60	-1.7
5,382,183	-		GFF5406	0.60	+0.3
5,382,183	-		GFF5406	0.60	-3.1
5,382,183	-		GFF5406	0.60	-0.7
5,382,194	-		GFF5406	0.63	+0.1
5,382,194	-		GFF5406	0.63	-1.1
5,382,204	-		GFF5406	0.65	+0.6
5,382,213	+		GFF5406	0.67	-1.3
5,382,217	+		GFF5406	0.68	-0.1
5,382,217	+		GFF5406	0.68	-3.5
5,382,220	-		GFF5406	0.69	+0.5
5,382,222	+		GFF5406	0.70	-0.5
5,382,222	+		GFF5406	0.70	-0.2
5,382,222	+		GFF5406	0.70	+0.2
5,382,222	+		GFF5406	0.70	-0.0
5,382,222	+		GFF5406	0.70	+0.7
5,382,222	+		GFF5406	0.70	-2.1
5,382,222	+		GFF5406	0.70	+0.1
5,382,222	+		GFF5406	0.70	-0.5
5,382,222	+		GFF5406	0.70	-0.6
5,382,222	+		GFF5406	0.70	-1.5
5,382,222	+		GFF5406	0.70	-1.7
5,382,222	+		GFF5406	0.70	-0.8
5,382,222	+		GFF5406	0.70	-0.0
5,382,222	+		GFF5406	0.70	-2.3
5,382,222	+		GFF5406	0.70	-1.8
5,382,225	-		GFF5406	0.70	-0.6
5,382,230	-		GFF5406	0.72	-0.2
5,382,230	-		GFF5406	0.72	-0.9
5,382,230	-		GFF5406	0.72	-2.3
5,382,230	-		GFF5406	0.72	-1.2
5,382,230	-		GFF5406	0.72	+0.8
5,382,230	-		GFF5406	0.72	-2.2
5,382,230	-		GFF5406	0.72	-1.9
5,382,230	-		GFF5406	0.72	-2.1
5,382,278	+		GFF5406	0.84	+0.5
5,382,280	-		GFF5406	0.84	+0.9
5,382,286	-		GFF5406	0.86	-0.9
5,382,293	+		GFF5406	0.87	-0.1
5,382,293	-		GFF5406	0.87	+0.3
5,382,306	-				-1.6
5,382,316	-				-0.4
5,382,353	+				-0.5
5,382,359	+				-1.7
5,382,369	+		GFF5407	0.10	-0.5
5,382,384	-		GFF5407	0.15	-0.8
5,382,408	+		GFF5407	0.22	+0.5
5,382,417	-		GFF5407	0.25	-2.0
5,382,448	-		GFF5407	0.35	-1.9
5,382,464	+		GFF5407	0.40	-1.5
5,382,464	+		GFF5407	0.40	-0.5
5,382,472	-		GFF5407	0.42	-0.8
5,382,472	-		GFF5407	0.42	+0.2
5,382,472	-		GFF5407	0.42	+0.7
5,382,479	-		GFF5407	0.45	+0.5
5,382,500	-		GFF5407	0.51	-1.2
5,382,500	-		GFF5407	0.51	-0.9
5,382,502	+		GFF5407	0.52	-1.6
5,382,510	-		GFF5407	0.54	-0.9
5,382,510	-		GFF5407	0.54	+1.6
5,382,510	-		GFF5407	0.54	-1.8
5,382,510	-		GFF5407	0.54	-1.3
5,382,510	-		GFF5407	0.54	-1.0
5,382,562	-		GFF5407	0.70	+0.8
5,382,587	+		GFF5407	0.78	-2.0
5,382,625	+				-0.3
5,382,628	-				+0.4
5,382,651	-				-0.7
5,382,655	-				-0.8
5,382,657	+				-0.3
5,382,668	-				+0.1
5,382,670	-				-0.7
5,382,670	-				-0.8
5,382,696	-				+0.3
5,382,713	-				-1.2
5,382,746	+				-0.5
5,382,751	+				-0.0
5,382,752	+				-0.5
5,382,752	+				-0.3
5,382,759	-				-1.3
5,382,759	-				+0.7
5,382,759	-				-0.5
5,382,771	+				-1.1
5,382,779	+				-0.2
5,382,787	+				+0.1
5,382,787	+				-1.2
5,382,787	-				-2.3
5,382,803	+				+0.4
5,382,803	+				+0.1
5,382,803	+				-1.1
5,382,805	+				-0.8
5,382,813	+				-1.8
5,382,829	+				-1.3
5,382,836	-				-1.2
5,382,850	+				+0.5
5,382,858	-				-1.5
5,382,858	-				+0.6
5,382,868	-				-0.6
5,382,909	-				+0.2
5,382,910	-				-0.6
5,383,105	+		GFF5408	0.21	-0.3
5,383,107	+		GFF5408	0.21	-1.9
5,383,124	+		GFF5408	0.26	-1.3
5,383,136	+		GFF5408	0.29	+0.3
5,383,149	-		GFF5408	0.32	+0.9
5,383,149	-		GFF5408	0.32	-0.5
5,383,149	-		GFF5408	0.32	+0.1
5,383,154	-		GFF5408	0.33	-0.7
5,383,161	-		GFF5408	0.35	+0.8
5,383,167	-		GFF5408	0.37	+0.7
5,383,167	-		GFF5408	0.37	+1.0
5,383,167	-		GFF5408	0.37	-0.0
5,383,167	-		GFF5408	0.37	-0.2
5,383,167	-		GFF5408	0.37	-0.3
5,383,167	-		GFF5408	0.37	-0.1
5,383,167	-		GFF5408	0.37	-1.2
5,383,167	-		GFF5408	0.37	+0.5
5,383,167	-		GFF5408	0.37	-1.1
5,383,167	-		GFF5408	0.37	+0.5
5,383,172	-		GFF5408	0.38	+0.3
5,383,177	-		GFF5408	0.39	-0.3
5,383,285	-		GFF5408	0.67	-0.5
5,383,357	+		GFF5408	0.86	-1.8
5,383,361	+		GFF5408	0.87	-0.5
5,383,382	+				+0.4
5,383,392	+				+0.4
5,383,392	+				+1.1
5,383,392	+				+0.4
5,383,397	+				-2.5
5,383,397	+				+0.0
5,383,397	+				-1.8
5,383,397	+				-0.6
5,383,397	+				-1.8
5,383,397	+				+0.1
5,383,397	+				-1.6
5,383,398	+				-0.4
5,383,400	-				-0.0
5,383,400	-				-0.6
5,383,400	-				-1.2
5,383,400	-				-0.8
5,383,400	-				-1.4
5,383,405	-				-0.5
5,383,405	-				-0.3
5,383,405	-				+0.3
5,383,405	-				-2.1
5,383,405	-				+1.3
5,383,422	+				-2.4
5,383,437	+				-0.6
5,383,437	-				-0.2
5,383,438	-				+0.1
5,383,438	-				-0.0
5,383,454	+				+0.1
5,383,461	+				-3.4
5,383,481	+				-0.0
5,383,481	+				-0.5
5,383,481	-				+0.5
5,383,489	-				+0.3
5,383,505	+				-0.0
5,383,524	+				-0.0
5,383,524	+				+0.3
5,383,529	+				-1.1
5,383,532	-				+0.2
5,383,534	+				-1.6
5,383,534	+				-0.8
5,383,534	+				-0.9
5,383,534	+				+0.4
5,383,542	-				-1.5
5,383,542	-				-1.2
5,383,542	-				-0.4
5,383,542	-				-2.5
5,383,542	-				-0.2
5,383,544	+				-2.0
5,383,544	+				-0.2
5,383,547	-				-0.3
5,383,547	-				+0.3
5,383,547	-				-0.9
5,383,547	-				-1.9
5,383,558	+				-1.3
5,383,566	-				-0.9
5,383,569	+				-0.3
5,383,583	+				-1.8
5,383,587	-				-0.4