Strain Fitness in Sphingobium sp. HT1-2 around GFF5372

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,353,630	+				-0.2
5,353,646	+				+0.8
5,353,651	+				-0.6
5,353,654	-				+0.5
5,353,666	+				+1.2
5,353,666	+				+0.5
5,353,666	+				-0.2
5,353,666	+				+0.6
5,353,666	+				-0.6
5,353,666	+				-0.6
5,353,666	+				-0.0
5,353,666	+				-0.6
5,353,666	+				-0.2
5,353,666	+				-1.3
5,353,666	+				-1.4
5,353,666	+				-1.0
5,353,666	+				+1.0
5,353,666	+				+0.7
5,353,674	-				+0.2
5,353,674	-				-1.3
5,353,674	-				+1.8
5,353,674	-				-0.0
5,353,674	-				+0.4
5,353,674	-				-1.1
5,353,674	-				-1.5
5,353,674	-				-0.6
5,353,674	-				+0.2
5,353,674	-				+0.4
5,353,674	-				-0.3
5,353,674	-				-1.7
5,353,674	-				+1.1
5,353,674	-				+0.1
5,353,674	-				-1.6
5,353,684	-				+0.4
5,353,692	+				+1.1
5,353,692	+				-0.2
5,353,699	+				+0.5
5,353,699	+				-0.5
5,353,699	+				+0.5
5,353,699	+				+1.0
5,353,699	+				-2.5
5,353,699	+				+0.3
5,353,699	+				+0.6
5,353,700	-				-0.7
5,353,700	-				-0.9
5,353,700	-				-1.8
5,353,707	-				+0.2
5,353,707	-				+0.3
5,353,707	-				+1.1
5,353,707	-				-0.3
5,353,707	-				-1.7
5,353,707	-				+0.8
5,353,707	-				+0.1
5,353,707	-				+0.3
5,353,707	-				-0.0
5,353,707	-				-1.7
5,353,707	-				-1.5
5,353,744	+				-0.7
5,353,744	+				-0.8
5,353,744	+				-0.4
5,353,744	+				+1.1
5,353,744	+				-2.3
5,353,752	+				-0.3
5,353,752	+				-0.5
5,353,752	+				-0.3
5,353,752	+				-1.3
5,353,752	+				-0.1
5,353,752	+				-0.6
5,353,752	+				-0.3
5,353,752	-				-1.1
5,353,752	-				+0.2
5,353,752	-				-0.2
5,353,752	-				+0.2
5,353,754	+				-2.1
5,353,757	-				+0.5
5,353,760	-				-0.2
5,353,760	-				-0.1
5,353,760	-				-0.6
5,353,760	-				-1.2
5,353,760	-				-0.5
5,353,760	-				+0.8
5,353,760	-				-2.0
5,353,762	-				-1.9
5,353,794	-				+2.0
5,353,852	-				-1.8
5,353,870	+				+1.5
5,353,883	-				+0.1
5,353,888	-				+0.4
5,353,904	+				-1.5
5,353,919	+				-1.0
5,353,927	-				+1.1
5,353,928	-				-0.6
5,353,948	+		GFF5371	0.18	-1.6
5,353,964	-		GFF5371	0.28	-0.1
5,353,978	-		GFF5371	0.37	-0.8
5,353,986	-		GFF5371	0.42	-2.3
5,353,992	-		GFF5371	0.46	-1.0
5,354,013	+		GFF5371	0.59	-0.8
5,354,028	-		GFF5371	0.69	-0.1
5,354,062	+				-0.4
5,354,067	+				-2.1
5,354,070	-				+0.4
5,354,072	+				+0.8
5,354,072	+				+1.6
5,354,075	-				+1.2
5,354,075	-				+1.2
5,354,077	+				+1.1
5,354,077	+				+0.9
5,354,077	+				-0.0
5,354,080	-				-0.7
5,354,085	-				-0.5
5,354,087	+				-0.7
5,354,090	+				-1.5
5,354,095	-				-2.0
5,354,098	-				-0.1
5,354,098	-				+1.2
5,354,099	+				+0.3
5,354,123	+				+0.9
5,354,123	+				+0.9
5,354,131	+				-0.6
5,354,131	+				+0.2
5,354,152	-				+0.5
5,354,156	+				-0.7
5,354,164	-				-0.8
5,354,175	-				-0.7
5,354,175	-				+0.2
5,354,175	-				+0.8
5,354,239	-				-0.6
5,354,284	+				+0.4
5,354,292	-				-1.5
5,354,306	+				+0.6
5,354,314	-				+0.9
5,354,331	-				-0.0
5,354,335	-				-1.6
5,354,383	+				-1.7
5,354,398	+				-0.2
5,354,398	+				-0.5
5,354,398	+				-0.5
5,354,398	+				+0.0
5,354,398	+				+0.1
5,354,406	-				+1.2
5,354,406	-				+0.3
5,354,406	-				+0.7
5,354,406	-				-0.0
5,354,540	-				-0.5
5,354,543	+				-0.6
5,354,548	-				-1.7
5,354,553	-				-0.0
5,354,553	-				-0.4
5,354,560	+				+1.0
5,354,561	-				+0.3
5,354,577	-				-0.2
5,354,662	-				-0.1
5,354,671	+				+0.5
5,354,671	+				-0.2
5,354,671	-				-0.3
5,354,676	+				-0.6
5,354,679	-				+0.7
5,354,679	-				+0.3
5,354,699	+				+0.3
5,354,699	+				-0.7
5,354,699	+				-2.3
5,354,699	+				-0.2
5,354,702	-				+0.3
5,354,728	+				-0.6
5,354,728	+				+0.4
5,354,736	-				+0.8
5,354,741	+				+0.2
5,354,773	-				+0.1
5,354,814	-		GFF5372	0.11	-0.9
5,354,822	+		GFF5372	0.11	+1.6
5,354,832	+		GFF5372	0.12	-0.1
5,354,832	+		GFF5372	0.12	-0.3
5,354,832	+		GFF5372	0.12	-0.3
5,354,832	+		GFF5372	0.12	+0.7
5,354,835	+		GFF5372	0.12	+0.7
5,354,840	-		GFF5372	0.12	+0.4
5,354,840	-		GFF5372	0.12	+1.1
5,354,846	+		GFF5372	0.12	+1.1
5,354,863	-		GFF5372	0.13	+0.9
5,354,875	+		GFF5372	0.14	-1.5
5,354,883	-		GFF5372	0.14	-1.3
5,354,895	+		GFF5372	0.15	+1.0
5,354,895	+		GFF5372	0.15	+0.1
5,354,895	+		GFF5372	0.15	+0.6
5,354,897	+		GFF5372	0.15	-2.2
5,354,897	+		GFF5372	0.15	+1.0
5,354,897	+		GFF5372	0.15	+0.6
5,354,898	-		GFF5372	0.15	-1.4
5,354,903	-		GFF5372	0.15	+1.1
5,354,905	-		GFF5372	0.16	-0.0
5,354,909	+		GFF5372	0.16	-3.0
5,354,912	+		GFF5372	0.16	-1.2
5,354,920	-		GFF5372	0.16	-0.9
5,354,922	+		GFF5372	0.16	-0.3
5,354,930	-		GFF5372	0.17	+0.9
5,354,974	+		GFF5372	0.19	-1.6
5,354,974	+		GFF5372	0.19	+0.5
5,354,984	+		GFF5372	0.20	+0.7
5,354,994	+		GFF5372	0.20	+0.1
5,355,006	+		GFF5372	0.21	-0.1
5,355,036	+		GFF5372	0.23	-0.4
5,355,056	+		GFF5372	0.24	+0.4
5,355,064	-		GFF5372	0.24	-0.0
5,355,074	-		GFF5372	0.25	-0.6
5,355,074	-		GFF5372	0.25	-2.0
5,355,096	+		GFF5372	0.26	+0.4
5,355,096	+		GFF5372	0.26	+0.4
5,355,096	+		GFF5372	0.26	-0.1
5,355,096	+		GFF5372	0.26	+0.1
5,355,096	+		GFF5372	0.26	-0.8
5,355,096	+		GFF5372	0.26	-0.4
5,355,096	+		GFF5372	0.26	-0.7
5,355,096	+		GFF5372	0.26	-1.0
5,355,097	-		GFF5372	0.26	-0.8
5,355,107	+		GFF5372	0.26	-0.1
5,355,110	+		GFF5372	0.26	-1.2
5,355,181	+		GFF5372	0.30	+0.9
5,355,181	+		GFF5372	0.30	-0.4
5,355,181	+		GFF5372	0.30	+1.2
5,355,181	+		GFF5372	0.30	-0.3
5,355,181	+		GFF5372	0.30	+0.8
5,355,181	+		GFF5372	0.30	+1.5
5,355,186	+		GFF5372	0.30	-0.7
5,355,186	+		GFF5372	0.30	-0.1
5,355,186	+		GFF5372	0.30	-0.2
5,355,186	+		GFF5372	0.30	+0.2
5,355,188	+		GFF5372	0.31	-0.0
5,355,189	-		GFF5372	0.31	-0.2
5,355,189	-		GFF5372	0.31	+0.8
5,355,189	-		GFF5372	0.31	-1.7
5,355,189	-		GFF5372	0.31	+0.7
5,355,189	-		GFF5372	0.31	+0.7
5,355,189	-		GFF5372	0.31	-1.7
5,355,189	-		GFF5372	0.31	+0.3
5,355,189	-		GFF5372	0.31	+0.7
5,355,194	-		GFF5372	0.31	-0.3
5,355,194	-		GFF5372	0.31	+0.2
5,355,194	-		GFF5372	0.31	-0.4
5,355,194	-		GFF5372	0.31	-2.4
5,355,194	-		GFF5372	0.31	-0.1
5,355,196	-		GFF5372	0.31	-0.7
5,355,196	-		GFF5372	0.31	+0.4
5,355,201	-		GFF5372	0.31	-0.3
5,355,209	-		GFF5372	0.32	-0.4
5,355,211	-		GFF5372	0.32	-0.6
5,355,280	+		GFF5372	0.35	-0.2
5,355,283	+		GFF5372	0.36	-0.9
5,355,305	+		GFF5372	0.37	+0.1
5,355,321	-		GFF5372	0.38	-1.6
5,355,369	+		GFF5372	0.40	+0.8
5,355,377	-		GFF5372	0.41	-0.0
5,355,377	-		GFF5372	0.41	-0.1
5,355,395	-		GFF5372	0.42	+0.6
5,355,450	-		GFF5372	0.44	+0.5
5,355,450	-		GFF5372	0.44	-0.2
5,355,478	-		GFF5372	0.46	-0.3
5,355,480	+		GFF5372	0.46	+0.7
5,355,480	+		GFF5372	0.46	-0.5
5,355,488	-		GFF5372	0.46	-2.3
5,355,488	-		GFF5372	0.46	-2.3
5,355,503	+		GFF5372	0.47	-1.5
5,355,509	+		GFF5372	0.48	-0.5
5,355,510	+		GFF5372	0.48	+0.5
5,355,511	-		GFF5372	0.48	-0.5
5,355,511	-		GFF5372	0.48	-1.0
5,355,534	-		GFF5372	0.49	+1.2
5,355,544	+		GFF5372	0.49	-2.3
5,355,563	+		GFF5372	0.50	+0.1
5,355,563	+		GFF5372	0.50	+0.4
5,355,571	-		GFF5372	0.51	+1.8
5,355,589	-		GFF5372	0.52	-0.9
5,355,598	+		GFF5372	0.52	-0.5
5,355,628	+		GFF5372	0.54	+0.9
5,355,628	+		GFF5372	0.54	+1.2
5,355,628	+		GFF5372	0.54	+0.3
5,355,628	+		GFF5372	0.54	-0.8
5,355,628	+		GFF5372	0.54	-1.8
5,355,628	+		GFF5372	0.54	+1.3
5,355,628	+		GFF5372	0.54	+0.1
5,355,628	+		GFF5372	0.54	-0.4
5,355,633	+		GFF5372	0.54	+0.1
5,355,636	-		GFF5372	0.54	+1.1
5,355,636	-		GFF5372	0.54	+0.5
5,355,636	-		GFF5372	0.54	+0.4
5,355,636	-		GFF5372	0.54	-2.3
5,355,636	-		GFF5372	0.54	-0.2
5,355,636	-		GFF5372	0.54	-1.1
5,355,636	-		GFF5372	0.54	+0.4
5,355,636	-		GFF5372	0.54	+1.3
5,355,638	+		GFF5372	0.54	-0.5
5,355,638	+		GFF5372	0.54	-0.6
5,355,638	+		GFF5372	0.54	-0.4
5,355,646	-		GFF5372	0.55	+0.8
5,355,663	+		GFF5372	0.56	-0.5
5,355,664	+		GFF5372	0.56	-1.3
5,355,684	+		GFF5372	0.57	-0.7
5,355,693	+		GFF5372	0.57	-0.8
5,355,693	+		GFF5372	0.57	+1.2
5,355,699	+		GFF5372	0.58	+0.4
5,355,699	+		GFF5372	0.58	+1.2
5,355,721	-		GFF5372	0.59	+0.2
5,355,754	+		GFF5372	0.61	-0.2
5,355,762	-		GFF5372	0.61	+0.2
5,355,762	-		GFF5372	0.61	-0.8
5,355,778	+		GFF5372	0.62	-0.8
5,355,799	+		GFF5372	0.63	+0.2
5,355,799	+		GFF5372	0.63	+0.7
5,355,807	-		GFF5372	0.63	-0.1
5,355,807	-		GFF5372	0.63	+0.9
5,355,809	-		GFF5372	0.63	+1.0
5,355,814	+		GFF5372	0.64	-0.6
5,355,839	-		GFF5372	0.65	-0.7
5,355,839	-		GFF5372	0.65	+0.7
5,355,853	+		GFF5372	0.66	+0.3
5,355,859	+		GFF5372	0.66	-0.0
5,355,861	+		GFF5372	0.66	-1.4
5,355,861	+		GFF5372	0.66	+0.4
5,355,861	-		GFF5372	0.66	-1.9
5,355,861	-		GFF5372	0.66	+0.3
5,355,892	+		GFF5372	0.68	-0.6
5,355,892	+		GFF5372	0.68	-0.8
5,355,899	+		GFF5372	0.68	+0.6
5,355,921	+		GFF5372	0.69	-1.7
5,355,926	+		GFF5372	0.70	+0.7
5,355,945	+		GFF5372	0.71	-0.7
5,355,945	+		GFF5372	0.71	-0.4
5,355,953	+		GFF5372	0.71	-0.3
5,355,953	+		GFF5372	0.71	-1.4
5,355,953	-		GFF5372	0.71	+0.7
5,355,961	-		GFF5372	0.72	+0.2
5,355,961	-		GFF5372	0.72	-1.2
5,355,976	+		GFF5372	0.72	+0.6
5,355,976	+		GFF5372	0.72	-0.6
5,355,984	-		GFF5372	0.73	-3.3
5,355,996	+		GFF5372	0.73	-0.5
5,356,035	+		GFF5372	0.75	-0.5
5,356,042	+		GFF5372	0.76	+0.9
5,356,042	+		GFF5372	0.76	+0.1
5,356,042	+		GFF5372	0.76	+1.1
5,356,042	+		GFF5372	0.76	+1.0
5,356,042	+		GFF5372	0.76	+0.5
5,356,042	+		GFF5372	0.76	-2.1
5,356,042	+		GFF5372	0.76	+1.2
5,356,042	+		GFF5372	0.76	-1.0
5,356,044	+		GFF5372	0.76	+0.2
5,356,050	-		GFF5372	0.76	+1.2
5,356,050	-		GFF5372	0.76	-2.3
5,356,052	-		GFF5372	0.76	-1.4
5,356,059	+		GFF5372	0.77	+0.4
5,356,062	+		GFF5372	0.77	-1.7
5,356,062	+		GFF5372	0.77	+0.3
5,356,067	+		GFF5372	0.77	+1.0
5,356,067	+		GFF5372	0.77	+0.5
5,356,067	+		GFF5372	0.77	-0.7
5,356,067	+		GFF5372	0.77	+0.8
5,356,070	-		GFF5372	0.77	-0.1
5,356,070	-		GFF5372	0.77	+0.2
5,356,072	+		GFF5372	0.77	-0.3
5,356,072	+		GFF5372	0.77	-1.5
5,356,072	+		GFF5372	0.77	-0.8
5,356,072	+		GFF5372	0.77	-0.3
5,356,074	+		GFF5372	0.78	-0.0
5,356,074	+		GFF5372	0.78	+1.0
5,356,075	-		GFF5372	0.78	-1.0
5,356,075	-		GFF5372	0.78	+0.8
5,356,077	-		GFF5372	0.78	-0.9
5,356,080	-		GFF5372	0.78	-2.4
5,356,080	-		GFF5372	0.78	+0.8
5,356,080	-		GFF5372	0.78	+1.4
5,356,112	+		GFF5372	0.80	+0.3
5,356,112	-		GFF5372	0.80	-0.0
5,356,117	-		GFF5372	0.80	-0.0
5,356,132	+		GFF5372	0.81	-1.5
5,356,148	-		GFF5372	0.81	+0.6
5,356,169	-		GFF5372	0.83	-1.0
5,356,179	-		GFF5372	0.83	-0.5
5,356,184	-		GFF5372	0.83	+0.3
5,356,219	+		GFF5372	0.85	-1.7
5,356,227	-		GFF5372	0.86	+1.1
5,356,229	-		GFF5372	0.86	+0.7
5,356,234	+		GFF5372	0.86	+0.6
5,356,236	+		GFF5372	0.86	+0.5
5,356,244	-		GFF5372	0.87	+1.3
5,356,260	+		GFF5372	0.87	-0.0
5,356,260	+		GFF5372	0.87	+0.9
5,356,260	+		GFF5372	0.87	+0.9
5,356,268	-		GFF5372	0.88	-0.8
5,356,299	+		GFF5372	0.89	-2.0
5,356,328	+				-1.1
5,356,345	+				-0.1
5,356,345	+				+1.3
5,356,345	+				-0.2
5,356,348	-				-0.3
5,356,428	-				+0.2
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