Strain Fitness in Sphingobium sp. HT1-2 around GFF5350

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,339,710	+		GFF5349	0.51	+0.7
5,339,710	+		GFF5349	0.51	+0.2
5,339,713	-		GFF5349	0.51	+0.4
5,339,735	+		GFF5349	0.52	-0.0
5,339,735	+		GFF5349	0.52	-0.0
5,339,743	-		GFF5349	0.52	+0.3
5,339,745	-		GFF5349	0.52	+0.1
5,339,755	-		GFF5349	0.53	-1.5
5,339,759	+		GFF5349	0.53	-1.8
5,339,759	+		GFF5349	0.53	+0.8
5,339,763	-		GFF5349	0.53	-0.5
5,339,766	+		GFF5349	0.53	-2.7
5,339,774	-		GFF5349	0.54	-0.2
5,339,775	-		GFF5349	0.54	+1.3
5,339,777	+		GFF5349	0.54	+0.8
5,339,777	+		GFF5349	0.54	+1.0
5,339,779	-		GFF5349	0.54	-0.5
5,339,779	-		GFF5349	0.54	+1.1
5,339,785	-		GFF5349	0.54	+1.3
5,339,785	-		GFF5349	0.54	-0.6
5,339,787	-		GFF5349	0.54	+0.7
5,339,792	+		GFF5349	0.55	+1.1
5,339,792	+		GFF5349	0.55	+0.1
5,339,792	+		GFF5349	0.55	+0.3
5,339,792	+		GFF5349	0.55	+0.1
5,339,792	+		GFF5349	0.55	-0.7
5,339,800	-		GFF5349	0.55	+1.5
5,339,800	-		GFF5349	0.55	-1.7
5,339,800	-		GFF5349	0.55	-0.9
5,339,800	-		GFF5349	0.55	+1.7
5,339,800	-		GFF5349	0.55	+0.8
5,339,810	-		GFF5349	0.56	+0.9
5,339,810	-		GFF5349	0.56	+1.9
5,339,810	-		GFF5349	0.56	+1.0
5,339,818	+		GFF5349	0.56	-0.0
5,339,848	+		GFF5349	0.57	-0.2
5,339,848	+		GFF5349	0.57	+1.0
5,339,848	+		GFF5349	0.57	+0.2
5,339,853	+		GFF5349	0.58	+0.1
5,339,856	-		GFF5349	0.58	+0.5
5,339,858	-		GFF5349	0.58	+0.3
5,339,863	+		GFF5349	0.58	+0.7
5,339,863	+		GFF5349	0.58	-0.8
5,339,863	+		GFF5349	0.58	+0.5
5,339,863	+		GFF5349	0.58	-0.0
5,339,869	-		GFF5349	0.59	+2.1
5,339,871	-		GFF5349	0.59	+0.3
5,339,871	-		GFF5349	0.59	+0.7
5,339,871	-		GFF5349	0.59	-0.6
5,339,871	-		GFF5349	0.59	+0.2
5,339,871	-		GFF5349	0.59	-0.5
5,339,871	-		GFF5349	0.59	-2.3
5,339,879	+		GFF5349	0.59	-2.0
5,339,879	+		GFF5349	0.59	-1.1
5,339,887	-		GFF5349	0.59	+1.3
5,339,887	-		GFF5349	0.59	-0.2
5,339,896	+		GFF5349	0.60	+0.5
5,339,897	+		GFF5349	0.60	+1.0
5,339,901	+		GFF5349	0.60	+1.0
5,339,901	+		GFF5349	0.60	+0.2
5,339,901	+		GFF5349	0.60	-0.5
5,339,901	+		GFF5349	0.60	+2.2
5,339,902	+		GFF5349	0.60	+1.3
5,339,902	+		GFF5349	0.60	-0.0
5,339,902	+		GFF5349	0.60	-1.0
5,339,902	+		GFF5349	0.60	+0.9
5,339,906	+		GFF5349	0.60	-0.0
5,339,909	-		GFF5349	0.61	-0.5
5,339,909	-		GFF5349	0.61	-1.6
5,339,909	-		GFF5349	0.61	+0.7
5,339,909	-		GFF5349	0.61	-0.3
5,339,910	-		GFF5349	0.61	+0.1
5,339,910	-		GFF5349	0.61	-0.0
5,339,914	-		GFF5349	0.61	+0.3
5,339,921	+		GFF5349	0.61	+1.1
5,339,921	+		GFF5349	0.61	+0.8
5,339,921	+		GFF5349	0.61	-0.2
5,339,928	+		GFF5349	0.62	+1.3
5,339,929	-		GFF5349	0.62	-0.0
5,339,929	-		GFF5349	0.62	-0.6
5,339,929	-		GFF5349	0.62	-0.2
5,339,954	+		GFF5349	0.63	-0.2
5,339,957	-		GFF5349	0.63	-0.2
5,339,969	-		GFF5349	0.64	+0.3
5,339,969	-		GFF5349	0.64	+0.4
5,339,978	-		GFF5349	0.64	-0.4
5,339,981	+		GFF5349	0.64	-0.3
5,339,989	-		GFF5349	0.65	+1.1
5,339,992	+		GFF5349	0.65	-0.0
5,339,993	-		GFF5349	0.65	+1.1
5,340,012	+		GFF5349	0.66	-1.9
5,340,035	+		GFF5349	0.67	+1.9
5,340,035	+		GFF5349	0.67	-0.2
5,340,040	+		GFF5349	0.67	-0.6
5,340,040	+		GFF5349	0.67	-1.1
5,340,040	+		GFF5349	0.67	-0.3
5,340,043	-		GFF5349	0.67	+0.8
5,340,043	-		GFF5349	0.67	-0.1
5,340,043	-		GFF5349	0.67	-0.5
5,340,043	-		GFF5349	0.67	+0.8
5,340,043	-		GFF5349	0.67	+1.7
5,340,043	-		GFF5349	0.67	-1.1
5,340,046	+		GFF5349	0.67	+0.0
5,340,048	-		GFF5349	0.68	-1.5
5,340,048	-		GFF5349	0.68	-0.3
5,340,048	-		GFF5349	0.68	-0.0
5,340,048	-		GFF5349	0.68	+0.2
5,340,054	-		GFF5349	0.68	-0.4
5,340,054	-		GFF5349	0.68	-0.8
5,340,068	-		GFF5349	0.69	+0.9
5,340,117	+		GFF5349	0.71	+0.2
5,340,117	-		GFF5349	0.71	-0.5
5,340,125	-		GFF5349	0.71	+0.8
5,340,131	+		GFF5349	0.72	+0.2
5,340,131	+		GFF5349	0.72	-0.0
5,340,131	+		GFF5349	0.72	-0.0
5,340,147	-		GFF5349	0.73	-1.0
5,340,165	+		GFF5349	0.73	-0.1
5,340,173	-		GFF5349	0.74	-0.2
5,340,173	-		GFF5349	0.74	+1.2
5,340,173	-		GFF5349	0.74	+0.1
5,340,196	-		GFF5349	0.75	-0.9
5,340,208	-		GFF5349	0.76	-0.5
5,340,229	+		GFF5349	0.77	+0.1
5,340,319	-		GFF5349	0.81	-1.6
5,340,320	-		GFF5349	0.81	+0.1
5,340,329	+		GFF5349	0.82	-1.6
5,340,329	+		GFF5349	0.82	-1.1
5,340,329	+		GFF5349	0.82	+0.0
5,340,329	+		GFF5349	0.82	-1.3
5,340,334	+		GFF5349	0.82	+1.1
5,340,334	+		GFF5349	0.82	-1.2
5,340,334	+		GFF5349	0.82	-0.1
5,340,357	+		GFF5349	0.83	+0.3
5,340,361	+		GFF5349	0.83	+0.9
5,340,361	+		GFF5349	0.83	+1.0
5,340,361	+		GFF5349	0.83	-0.2
5,340,361	+		GFF5349	0.83	+0.8
5,340,361	+		GFF5349	0.83	+1.2
5,340,361	+		GFF5349	0.83	+0.5
5,340,361	+		GFF5349	0.83	-0.5
5,340,361	+		GFF5349	0.83	-0.5
5,340,361	+		GFF5349	0.83	+0.6
5,340,366	+		GFF5349	0.84	+0.1
5,340,369	-		GFF5349	0.84	-0.2
5,340,369	-		GFF5349	0.84	-1.0
5,340,369	-		GFF5349	0.84	+1.2
5,340,404	-		GFF5349	0.86	+1.0
5,340,407	-		GFF5349	0.86	-2.7
5,340,585	+				-3.1
5,340,585	+				+1.9
5,340,590	+				+0.4
5,340,590	+				+0.5
5,340,626	-				-0.1
5,340,662	+				-0.1
5,340,686	+				-1.5
5,340,698	-				+1.1
5,340,729	+				-2.5
5,340,730	-				-1.0
5,340,734	+				+0.3
5,340,746	-				+0.5
5,340,747	-				+0.6
5,340,765	+		GFF5350	0.11	+0.4
5,340,773	-		GFF5350	0.12	-0.3
5,340,828	+		GFF5350	0.22	-1.5
5,340,828	+		GFF5350	0.22	+0.5
5,340,836	-		GFF5350	0.23	-1.5
5,340,861	-		GFF5350	0.28	-2.4
5,340,889	+		GFF5350	0.33	-2.7
5,340,894	+		GFF5350	0.34	-0.9
5,340,894	+		GFF5350	0.34	+1.1
5,340,894	-		GFF5350	0.34	-0.0
5,340,902	-		GFF5350	0.35	-2.3
5,340,902	-		GFF5350	0.35	-0.2
5,340,964	+		GFF5350	0.46	+1.1
5,340,972	-		GFF5350	0.47	+0.0
5,340,972	-		GFF5350	0.47	+1.3
5,341,026	-		GFF5350	0.57	-2.5
5,341,057	+		GFF5350	0.62	-0.9
5,341,065	-		GFF5350	0.64	-0.7
5,341,065	-		GFF5350	0.64	+1.5
5,341,097	+		GFF5350	0.69	-1.2
5,341,105	-		GFF5350	0.71	-0.7
5,341,115	+		GFF5350	0.73	+0.3
5,341,135	+		GFF5350	0.76	+1.1
5,341,145	-		GFF5350	0.78	+0.6
5,341,161	+		GFF5350	0.81	-1.7
5,341,163	+		GFF5350	0.81	+0.9
5,341,210	+		GFF5350	0.89	-0.9
5,341,226	+				+0.2
5,341,234	-				-0.9
5,341,247	+				-2.1
5,341,247	-				+0.3
5,341,249	+				-0.3
5,341,249	+				+0.9
5,341,249	+				-0.0
5,341,265	-				+0.2
5,341,266	-				+1.7
5,341,288	+				-1.9
5,341,308	+				+1.0
5,341,316	-		GFF5351	0.11	-1.1
5,341,322	+		GFF5351	0.13	-0.4
5,341,329	+		GFF5351	0.14	+0.7
5,341,330	-		GFF5351	0.15	-0.3
5,341,353	+		GFF5351	0.20	+0.5
5,341,364	+		GFF5351	0.22	+0.3
5,341,372	-		GFF5351	0.24	+1.2
5,341,374	+		GFF5351	0.24	-0.5
5,341,384	+		GFF5351	0.27	-0.0
5,341,384	+		GFF5351	0.27	-1.1
5,341,389	+		GFF5351	0.28	+1.2
5,341,392	-		GFF5351	0.29	+0.2
5,341,392	-		GFF5351	0.29	-2.5
5,341,397	-		GFF5351	0.30	-0.9
5,341,397	-		GFF5351	0.30	+0.0
5,341,399	+		GFF5351	0.30	+0.1
5,341,404	+		GFF5351	0.31	+0.1
5,341,407	-		GFF5351	0.32	+0.7
5,341,414	+		GFF5351	0.34	-1.7
5,341,414	+		GFF5351	0.34	+0.4
5,341,414	+		GFF5351	0.34	+0.5
5,341,422	-		GFF5351	0.35	+0.6
5,341,427	+		GFF5351	0.37	-1.7
5,341,427	+		GFF5351	0.37	+0.3
5,341,429	+		GFF5351	0.37	+0.4
5,341,434	+		GFF5351	0.38	-0.5
5,341,434	+		GFF5351	0.38	-0.4
5,341,439	+		GFF5351	0.39	-0.4
5,341,442	-		GFF5351	0.40	-0.5
5,341,442	-		GFF5351	0.40	-1.1
5,341,442	-		GFF5351	0.40	+0.3
5,341,442	-		GFF5351	0.40	-0.8
5,341,447	-		GFF5351	0.41	+0.3
5,341,491	+		GFF5351	0.51	+0.4
5,341,503	+		GFF5351	0.54	+0.0
5,341,513	+		GFF5351	0.56	+0.8
5,341,518	+		GFF5351	0.57	-0.4
5,341,521	-		GFF5351	0.58	+1.2
5,341,545	+		GFF5351	0.63	-0.6
5,341,547	+		GFF5351	0.64	+0.5
5,341,563	-		GFF5351	0.67	-1.6
5,341,577	+		GFF5351	0.71	-0.6
5,341,578	+		GFF5351	0.71	+0.4
5,341,578	+		GFF5351	0.71	+0.7
5,341,581	-		GFF5351	0.71	-0.3
5,341,583	+		GFF5351	0.72	+1.2
5,341,611	+		GFF5351	0.78	-2.0
5,341,619	+		GFF5351	0.80	+1.3
5,341,621	+		GFF5351	0.80	-0.2
5,341,621	+		GFF5351	0.80	-1.2
5,341,622	+		GFF5351	0.81	+1.1
5,341,629	-		GFF5351	0.82	-0.7
5,341,632	+		GFF5351	0.83	+0.5
5,341,640	-		GFF5351	0.85	+0.1
5,341,665	+				+0.2
5,341,680	+				-1.3
5,341,680	+				-0.5
5,341,713	+				-0.5
5,341,713	+				-1.5
5,341,718	+				-0.9
5,341,721	-				-1.8
5,341,724	+				-0.3
5,341,777	+		GFF5352	0.26	+1.1
5,341,785	-		GFF5352	0.29	+0.2
5,341,787	+		GFF5352	0.30	-0.3
5,341,795	-		GFF5352	0.33	+0.1
5,341,812	+		GFF5352	0.39	+0.1
5,341,820	-		GFF5352	0.42	-0.7
5,341,841	+		GFF5352	0.49	+0.3
5,341,855	+		GFF5352	0.55	-0.2
5,341,857	-		GFF5352	0.55	-0.0
5,341,861	+		GFF5352	0.57	+0.0
5,341,861	+		GFF5352	0.57	+1.6
5,341,862	+		GFF5352	0.57	-2.1
5,341,862	-		GFF5352	0.57	+0.4
5,341,863	-		GFF5352	0.58	-0.5
5,341,869	-		GFF5352	0.60	+1.0
5,341,869	-		GFF5352	0.60	-0.6
5,341,869	-		GFF5352	0.60	+0.9
5,341,869	-		GFF5352	0.60	+1.6
5,341,870	-		GFF5352	0.60	-0.9
5,341,872	+		GFF5352	0.61	+0.7
5,341,872	+		GFF5352	0.61	-0.5
5,341,880	-		GFF5352	0.64	-1.2
5,341,880	-		GFF5352	0.64	-0.2
5,341,880	-		GFF5352	0.64	-0.4
5,341,901	-		GFF5352	0.71	-0.7
5,341,934	-		GFF5352	0.84	-0.1
5,341,958	-				-0.6
5,341,963	+				-0.7
5,341,971	-				-1.6
5,341,971	-				-1.4
5,342,018	+				-1.5
5,342,058	+				+0.2
5,342,065	+				-0.0
5,342,066	-				-0.3
5,342,066	-				-0.2
5,342,068	-				-1.2
5,342,075	+				+1.2
5,342,084	+				-0.6
5,342,106	+				+0.5
5,342,120	+				-0.8
5,342,152	+		GFF5353	0.14	-1.9
5,342,152	+		GFF5353	0.14	+0.2
5,342,152	+		GFF5353	0.14	-0.2
5,342,174	-		GFF5353	0.22	+0.8
5,342,174	-		GFF5353	0.22	-0.9
5,342,183	+		GFF5353	0.25	+0.7
5,342,183	+		GFF5353	0.25	+0.3
5,342,185	-		GFF5353	0.26	-0.5
5,342,198	+		GFF5353	0.30	+1.0
5,342,224	-		GFF5353	0.40	-1.9
5,342,247	-		GFF5353	0.48	+0.9
5,342,253	-		GFF5353	0.50	+1.3
5,342,259	-		GFF5353	0.52	-1.6
5,342,265	-		GFF5353	0.54	+0.1
5,342,265	-		GFF5353	0.54	-3.1
5,342,265	-		GFF5353	0.54	-1.9
5,342,265	-		GFF5353	0.54	+0.6
5,342,265	-		GFF5353	0.54	+2.0