Strain Fitness in Sphingobium sp. HT1-2 around GFF5346

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,335,857	-				-0.7
5,335,858	-				-0.5
5,335,858	-				-0.7
5,335,858	-				-0.3
5,335,858	-				-1.4
5,335,881	-				-0.8
5,335,891	-				+0.6
5,336,024	-				+0.3
5,336,030	-				+0.5
5,336,032	-				+0.1
5,336,033	+				-1.2
5,336,043	+				+0.8
5,336,052	-				+0.2
5,336,058	+				+1.0
5,336,058	+				-1.8
5,336,058	+				+1.2
5,336,058	+				-1.7
5,336,058	+				-0.5
5,336,058	+				+0.5
5,336,058	+				-0.8
5,336,058	+				-2.2
5,336,058	+				+0.3
5,336,058	+				-0.0
5,336,058	+				-0.5
5,336,058	+				+0.1
5,336,058	+				-0.6
5,336,058	+				+0.7
5,336,058	+				-1.6
5,336,058	+				+0.7
5,336,058	+				+1.5
5,336,058	+				+0.6
5,336,058	+				+0.8
5,336,058	+				+0.1
5,336,058	+				+0.1
5,336,058	+				+0.9
5,336,058	+				-1.4
5,336,058	+				+0.0
5,336,058	+				+0.7
5,336,058	+				+0.8
5,336,058	+				-0.3
5,336,058	+				+0.5
5,336,058	+				-0.5
5,336,058	+				+1.8
5,336,064	-				-0.3
5,336,066	-				-0.0
5,336,066	-				-0.5
5,336,066	-				-1.3
5,336,066	-				-0.4
5,336,066	-				-2.2
5,336,066	-				-0.5
5,336,066	-				-1.1
5,336,066	-				-1.6
5,336,066	-				-0.5
5,336,066	-				-1.8
5,336,066	-				+0.3
5,336,066	-				-1.8
5,336,066	-				-1.5
5,336,066	-				-0.2
5,336,078	+				+0.4
5,336,078	+				-0.4
5,336,078	+				+0.8
5,336,086	-				+1.5
5,336,088	+				+0.1
5,336,088	+				+0.4
5,336,093	+				+0.5
5,336,096	-				-1.5
5,336,103	+				+0.8
5,336,108	+				+1.8
5,336,111	-				-0.5
5,336,111	-				+0.7
5,336,140	+				+1.0
5,336,146	+				-0.0
5,336,146	+				+1.1
5,336,148	-				-0.9
5,336,148	-				-2.1
5,336,148	-				-1.1
5,336,154	-				-0.4
5,336,180	-		GFF5345	0.12	+0.5
5,336,196	-		GFF5345	0.15	-1.2
5,336,231	-		GFF5345	0.19	+1.1
5,336,232	-		GFF5345	0.20	+0.7
5,336,248	+		GFF5345	0.22	+0.3
5,336,248	+		GFF5345	0.22	+0.8
5,336,256	-		GFF5345	0.23	-0.0
5,336,276	+		GFF5345	0.26	-1.8
5,336,306	-		GFF5345	0.30	-0.0
5,336,322	-		GFF5345	0.32	-1.0
5,336,325	+		GFF5345	0.32	+0.7
5,336,365	+		GFF5345	0.38	+1.1
5,336,367	+		GFF5345	0.38	-1.9
5,336,435	-		GFF5345	0.48	+1.0
5,336,460	-		GFF5345	0.51	+0.0
5,336,462	-		GFF5345	0.51	+1.3
5,336,470	-		GFF5345	0.52	-2.0
5,336,472	+		GFF5345	0.53	+0.5
5,336,477	+		GFF5345	0.53	+0.2
5,336,483	+		GFF5345	0.54	+1.3
5,336,485	-		GFF5345	0.54	-0.6
5,336,485	-		GFF5345	0.54	-1.5
5,336,485	-		GFF5345	0.54	+0.3
5,336,485	-		GFF5345	0.54	-0.5
5,336,485	-		GFF5345	0.54	+1.6
5,336,491	-		GFF5345	0.55	-1.1
5,336,504	-		GFF5345	0.57	+1.2
5,336,504	-		GFF5345	0.57	-0.2
5,336,520	+		GFF5345	0.59	-0.8
5,336,541	+		GFF5345	0.62	+1.4
5,336,541	+		GFF5345	0.62	+0.8
5,336,547	+		GFF5345	0.63	+1.2
5,336,547	+		GFF5345	0.63	-0.8
5,336,549	-		GFF5345	0.63	-1.2
5,336,549	-		GFF5345	0.63	-0.2
5,336,549	-		GFF5345	0.63	-0.1
5,336,549	-		GFF5345	0.63	-0.7
5,336,549	-		GFF5345	0.63	+0.5
5,336,549	-		GFF5345	0.63	+0.5
5,336,552	+		GFF5345	0.64	-0.0
5,336,555	-		GFF5345	0.64	+0.5
5,336,560	-		GFF5345	0.65	+0.4
5,336,565	+		GFF5345	0.66	+0.3
5,336,567	+		GFF5345	0.66	+1.3
5,336,567	+		GFF5345	0.66	+0.2
5,336,575	-		GFF5345	0.67	-0.0
5,336,588	-		GFF5345	0.69	-1.0
5,336,592	+		GFF5345	0.69	-0.8
5,336,592	+		GFF5345	0.69	-1.9
5,336,595	-		GFF5345	0.70	+0.1
5,336,621	-		GFF5345	0.73	-0.0
5,336,644	+		GFF5345	0.76	+1.6
5,336,652	-		GFF5345	0.78	+0.7
5,336,654	+		GFF5345	0.78	-2.2
5,336,662	-		GFF5345	0.79	+0.1
5,336,686	-		GFF5345	0.82	-0.7
5,336,707	-		GFF5345	0.85	+0.2
5,336,707	-		GFF5345	0.85	-0.2
5,336,717	+		GFF5345	0.87	-0.5
5,336,717	+		GFF5345	0.87	-0.1
5,336,717	+		GFF5345	0.87	+0.3
5,336,717	+		GFF5345	0.87	+0.5
5,336,717	+		GFF5345	0.87	+0.1
5,336,717	+		GFF5345	0.87	-0.9
5,336,717	-		GFF5345	0.87	-0.5
5,336,725	-		GFF5345	0.88	+0.3
5,336,725	-		GFF5345	0.88	-2.0
5,336,725	-		GFF5345	0.88	+0.5
5,336,725	-		GFF5345	0.88	+0.4
5,336,725	-		GFF5345	0.88	+0.9
5,336,745	+				-1.3
5,336,758	+				+0.7
5,336,758	+				-1.5
5,336,866	+		GFF5346	0.11	-1.3
5,336,868	+		GFF5346	0.12	-1.5
5,336,895	+		GFF5346	0.33	-1.4
5,336,905	-		GFF5346	0.40	-0.4
5,336,936	-		GFF5346	0.64	-0.5
5,337,078	+		GFF5347	0.17	-0.0
5,337,078	+		GFF5347	0.17	-2.0
5,337,078	+		GFF5347	0.17	+0.3
5,337,086	+		GFF5347	0.19	-0.6
5,337,093	+		GFF5347	0.20	-0.7
5,337,101	+		GFF5347	0.22	-1.1
5,337,107	+		GFF5347	0.23	-1.3
5,337,109	+		GFF5347	0.23	+0.4
5,337,109	+		GFF5347	0.23	-0.2
5,337,109	+		GFF5347	0.23	-0.1
5,337,109	+		GFF5347	0.23	-0.1
5,337,109	+		GFF5347	0.23	+0.2
5,337,109	+		GFF5347	0.23	+0.4
5,337,109	+		GFF5347	0.23	+0.4
5,337,109	+		GFF5347	0.23	+0.8
5,337,109	+		GFF5347	0.23	-0.8
5,337,109	+		GFF5347	0.23	-1.1
5,337,117	-		GFF5347	0.25	-2.2
5,337,117	-		GFF5347	0.25	+1.3
5,337,117	-		GFF5347	0.25	-2.7
5,337,117	-		GFF5347	0.25	-0.1
5,337,117	-		GFF5347	0.25	+0.4
5,337,117	-		GFF5347	0.25	-0.9
5,337,120	+		GFF5347	0.26	+0.6
5,337,158	+		GFF5347	0.34	-0.4
5,337,175	-		GFF5347	0.37	+0.6
5,337,177	+		GFF5347	0.38	+0.5
5,337,177	+		GFF5347	0.38	-1.3
5,337,177	+		GFF5347	0.38	-1.8
5,337,179	+		GFF5347	0.38	-0.3
5,337,179	+		GFF5347	0.38	-1.8
5,337,184	+		GFF5347	0.39	-1.1
5,337,185	-		GFF5347	0.39	-1.3
5,337,187	-		GFF5347	0.40	+0.0
5,337,187	-		GFF5347	0.40	-0.2
5,337,187	-		GFF5347	0.40	-0.3
5,337,187	-		GFF5347	0.40	-0.2
5,337,187	-		GFF5347	0.40	+0.3
5,337,187	-		GFF5347	0.40	+1.3
5,337,189	+		GFF5347	0.40	-0.5
5,337,189	+		GFF5347	0.40	+0.2
5,337,189	+		GFF5347	0.40	-1.5
5,337,189	+		GFF5347	0.40	-0.9
5,337,189	+		GFF5347	0.40	-0.5
5,337,189	+		GFF5347	0.40	+0.7
5,337,189	+		GFF5347	0.40	+0.1
5,337,189	+		GFF5347	0.40	-0.2
5,337,189	+		GFF5347	0.40	+0.3
5,337,189	+		GFF5347	0.40	-0.8
5,337,189	+		GFF5347	0.40	+1.0
5,337,197	-		GFF5347	0.42	-0.5
5,337,197	-		GFF5347	0.42	+1.6
5,337,197	-		GFF5347	0.42	+0.1
5,337,197	-		GFF5347	0.42	+0.6
5,337,197	-		GFF5347	0.42	-1.8
5,337,197	-		GFF5347	0.42	+1.1
5,337,197	-		GFF5347	0.42	-0.6
5,337,246	-		GFF5347	0.52	+1.7
5,337,280	+		GFF5347	0.59	+0.7
5,337,310	-		GFF5347	0.66	-0.0
5,337,310	-		GFF5347	0.66	+1.2
5,337,310	-		GFF5347	0.66	+0.4
5,337,310	-		GFF5347	0.66	+0.5
5,337,310	-		GFF5347	0.66	+1.5
5,337,310	-		GFF5347	0.66	+0.2
5,337,310	-		GFF5347	0.66	-1.5
5,337,316	+		GFF5347	0.67	-0.2
5,337,322	-		GFF5347	0.68	+0.8
5,337,322	-		GFF5347	0.68	-0.9
5,337,326	+		GFF5347	0.69	-0.5
5,337,326	+		GFF5347	0.69	-1.9
5,337,334	-		GFF5347	0.71	+1.0
5,337,349	+		GFF5347	0.74	-0.3
5,337,383	-		GFF5347	0.81	+0.5
5,337,385	+		GFF5347	0.82	+0.4
5,337,393	-		GFF5347	0.83	+0.8
5,337,405	-		GFF5347	0.86	-0.4
5,337,409	-		GFF5347	0.87	-1.6
5,337,414	+		GFF5347	0.88	+1.5
5,337,414	-		GFF5347	0.88	-1.9
5,337,414	-		GFF5347	0.88	-0.1
5,337,420	+		GFF5347	0.89	-0.1
5,337,420	+		GFF5347	0.89	-0.8
5,337,428	-				-0.0
5,337,428	-				-0.2
5,337,428	-				-0.0
5,337,428	-				-0.7
5,337,429	-				+0.3
5,337,438	+				-0.9
5,337,438	+				-0.2
5,337,439	-				-0.1
5,337,446	-				-1.8
5,337,446	-				+0.2
5,337,448	+				-1.8
5,337,456	-				-0.3
5,337,466	-				-0.2
5,337,473	+				+0.9
5,337,481	-				+0.3
5,337,486	+				-2.6
5,337,501	+				+0.2
5,337,513	+				+0.9
5,337,513	+				-1.6
5,337,513	+				-0.2
5,337,513	+				+1.5
5,337,513	+				+0.2
5,337,513	+				+0.1
5,337,513	+				-0.3
5,337,513	+				+0.8
5,337,513	+				+0.3
5,337,513	+				-0.3
5,337,513	+				-1.8
5,337,513	+				+0.8
5,337,513	+				-0.6
5,337,513	+				+0.0
5,337,513	-				-1.8
5,337,513	-				+0.5
5,337,521	-				-0.2
5,337,521	-				-1.9
5,337,521	-				+1.9
5,337,521	-				+1.0
5,337,521	-				+0.2
5,337,521	-				-0.0
5,337,521	-				-0.0
5,337,521	-				-0.4
5,337,521	-				-0.2
5,337,521	-				+0.1
5,337,521	-				-0.1
5,337,531	-				-1.0
5,337,531	-				-1.7
5,337,531	-				-2.0
5,337,533	-				+1.1
5,337,536	-				+0.0
5,337,536	-				-1.4
5,337,536	-				-0.3
5,337,536	-				-0.0
5,337,551	-				-0.0
5,337,645	-				-0.5
5,337,689	+		GFF5348	0.11	+0.7
5,337,703	+		GFF5348	0.12	-1.3
5,337,720	+		GFF5348	0.14	+0.0
5,337,720	+		GFF5348	0.14	-1.5
5,337,720	+		GFF5348	0.14	+1.8
5,337,720	+		GFF5348	0.14	+0.2
5,337,721	-		GFF5348	0.14	-0.4
5,337,725	+		GFF5348	0.14	+0.2
5,337,725	+		GFF5348	0.14	+0.3
5,337,725	+		GFF5348	0.14	+0.3
5,337,725	+		GFF5348	0.14	+1.8
5,337,725	+		GFF5348	0.14	-0.1
5,337,725	+		GFF5348	0.14	+0.2
5,337,725	+		GFF5348	0.14	+0.8
5,337,725	+		GFF5348	0.14	+1.4
5,337,728	-		GFF5348	0.14	+0.6
5,337,728	-		GFF5348	0.14	+0.9
5,337,728	-		GFF5348	0.14	+0.9
5,337,730	+		GFF5348	0.15	-0.2
5,337,730	+		GFF5348	0.15	-0.7
5,337,733	-		GFF5348	0.15	+1.6
5,337,733	-		GFF5348	0.15	+1.8
5,337,733	-		GFF5348	0.15	-1.6
5,337,733	-		GFF5348	0.15	+0.1
5,337,733	-		GFF5348	0.15	+1.7
5,337,733	-		GFF5348	0.15	-0.7
5,337,733	-		GFF5348	0.15	+0.5
5,337,733	-		GFF5348	0.15	-1.5
5,337,733	-		GFF5348	0.15	-0.3
5,337,733	-		GFF5348	0.15	-1.7
5,337,733	-		GFF5348	0.15	+0.5
5,337,733	-		GFF5348	0.15	-0.5
5,337,733	-		GFF5348	0.15	+0.2
5,337,733	-		GFF5348	0.15	-2.5
5,337,735	+		GFF5348	0.15	+0.7
5,337,735	+		GFF5348	0.15	+0.4
5,337,735	+		GFF5348	0.15	+0.1
5,337,735	+		GFF5348	0.15	-1.2
5,337,735	+		GFF5348	0.15	-0.0
5,337,735	+		GFF5348	0.15	+0.3
5,337,735	+		GFF5348	0.15	+1.6
5,337,735	+		GFF5348	0.15	-1.8
5,337,738	-		GFF5348	0.15	-0.5
5,337,743	-		GFF5348	0.16	+1.8
5,337,743	-		GFF5348	0.16	-0.4
5,337,743	-		GFF5348	0.16	-0.5
5,337,743	-		GFF5348	0.16	-1.6
5,337,743	-		GFF5348	0.16	+0.8
5,337,743	-		GFF5348	0.16	+0.4
5,337,743	-		GFF5348	0.16	+0.8
5,337,743	-		GFF5348	0.16	-0.0
5,337,743	-		GFF5348	0.16	+0.7
5,337,743	-		GFF5348	0.16	+0.3
5,337,743	-		GFF5348	0.16	-1.7
5,337,743	-		GFF5348	0.16	+1.1
5,337,743	-		GFF5348	0.16	+0.8
5,337,746	+		GFF5348	0.16	+0.8
5,337,756	+		GFF5348	0.17	+0.7
5,337,758	+		GFF5348	0.17	-0.3
5,337,758	+		GFF5348	0.17	-0.5
5,337,764	-		GFF5348	0.18	+0.5
5,337,766	-		GFF5348	0.18	-0.3
5,337,813	+		GFF5348	0.22	+1.0
5,337,813	+		GFF5348	0.22	+0.1
5,337,813	+		GFF5348	0.22	-0.5
5,337,813	+		GFF5348	0.22	+0.5
5,337,814	+		GFF5348	0.22	-0.0
5,337,815	+		GFF5348	0.22	+0.4
5,337,815	+		GFF5348	0.22	+0.4
5,337,815	+		GFF5348	0.22	-0.5
5,337,821	-		GFF5348	0.23	+0.2
5,337,821	-		GFF5348	0.23	+1.3
5,337,821	-		GFF5348	0.23	+0.2
5,337,821	-		GFF5348	0.23	-0.6
5,337,823	-		GFF5348	0.23	+1.0
5,337,825	+		GFF5348	0.23	-0.8
5,337,825	+		GFF5348	0.23	+0.7
5,337,825	+		GFF5348	0.23	+1.0
5,337,825	+		GFF5348	0.23	-0.1
5,337,833	-		GFF5348	0.24	-0.2
5,337,833	-		GFF5348	0.24	+0.6
5,337,833	-		GFF5348	0.24	+0.6
5,337,833	-		GFF5348	0.24	+0.4
5,337,833	-		GFF5348	0.24	+1.0
5,337,833	-		GFF5348	0.24	+0.0
5,337,833	-		GFF5348	0.24	+0.9
5,337,833	-		GFF5348	0.24	+0.2
5,337,835	+		GFF5348	0.24	-0.9
5,337,836	+		GFF5348	0.24	-0.6
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