Strain Fitness in Sphingobium sp. HT1-2 around GFF5325

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,316,805	-		GFF5324	0.54	-0.4
5,316,823	+		GFF5324	0.55	-0.0
5,316,832	-		GFF5324	0.56	-0.7
5,316,834	+		GFF5324	0.56	+0.1
5,316,842	-		GFF5324	0.56	+0.2
5,316,851	+		GFF5324	0.57	-1.8
5,316,853	+		GFF5324	0.57	-1.6
5,316,853	+		GFF5324	0.57	+0.1
5,316,853	+		GFF5324	0.57	-0.0
5,316,853	+		GFF5324	0.57	-0.6
5,316,853	+		GFF5324	0.57	-0.5
5,316,858	+		GFF5324	0.57	+0.7
5,316,861	-		GFF5324	0.57	-1.7
5,316,861	-		GFF5324	0.57	-1.1
5,316,861	-		GFF5324	0.57	-0.5
5,316,861	-		GFF5324	0.57	-0.0
5,316,866	-		GFF5324	0.58	-0.7
5,316,900	+		GFF5324	0.60	+0.3
5,316,913	-		GFF5324	0.61	-0.3
5,316,935	+		GFF5324	0.62	-1.4
5,316,973	+		GFF5324	0.64	+0.1
5,316,974	+		GFF5324	0.65	-0.6
5,316,974	+		GFF5324	0.65	+0.2
5,316,982	-		GFF5324	0.65	-1.5
5,316,982	-		GFF5324	0.65	-0.9
5,316,982	-		GFF5324	0.65	-1.8
5,316,995	+		GFF5324	0.66	+0.7
5,317,017	+		GFF5324	0.67	-1.4
5,317,033	+		GFF5324	0.68	+1.1
5,317,033	-		GFF5324	0.68	-0.9
5,317,040	-		GFF5324	0.69	-0.7
5,317,062	+		GFF5324	0.70	-0.2
5,317,065	+		GFF5324	0.70	-0.5
5,317,072	+		GFF5324	0.71	-0.1
5,317,072	+		GFF5324	0.71	-1.0
5,317,072	+		GFF5324	0.71	-1.0
5,317,072	+		GFF5324	0.71	+0.8
5,317,080	+		GFF5324	0.71	-0.1
5,317,080	+		GFF5324	0.71	+0.5
5,317,080	-		GFF5324	0.71	-1.8
5,317,080	-		GFF5324	0.71	-0.3
5,317,080	-		GFF5324	0.71	+0.4
5,317,080	-		GFF5324	0.71	+0.2
5,317,080	-		GFF5324	0.71	-1.5
5,317,080	-		GFF5324	0.71	-0.0
5,317,088	-		GFF5324	0.72	+0.4
5,317,098	+		GFF5324	0.72	-0.2
5,317,098	+		GFF5324	0.72	-1.8
5,317,103	+		GFF5324	0.73	+0.2
5,317,103	+		GFF5324	0.73	-0.8
5,317,106	-		GFF5324	0.73	-0.3
5,317,106	-		GFF5324	0.73	-1.6
5,317,108	+		GFF5324	0.73	+0.5
5,317,117	+		GFF5324	0.73	-0.1
5,317,122	+		GFF5324	0.74	-1.1
5,317,125	+		GFF5324	0.74	+0.4
5,317,125	-		GFF5324	0.74	-0.5
5,317,125	-		GFF5324	0.74	+0.3
5,317,127	-		GFF5324	0.74	+1.2
5,317,129	+		GFF5324	0.74	-0.0
5,317,135	-		GFF5324	0.75	-1.1
5,317,135	-		GFF5324	0.75	-1.8
5,317,142	+		GFF5324	0.75	+1.1
5,317,142	+		GFF5324	0.75	+0.7
5,317,143	+		GFF5324	0.75	-2.0
5,317,146	+		GFF5324	0.75	+0.4
5,317,152	-		GFF5324	0.76	-1.3
5,317,159	-		GFF5324	0.76	+0.0
5,317,198	-		GFF5324	0.79	+0.5
5,317,208	-		GFF5324	0.79	-3.2
5,317,226	+		GFF5324	0.80	-0.4
5,317,271	-		GFF5324	0.83	-0.3
5,317,276	-		GFF5324	0.83	-0.3
5,317,277	-		GFF5324	0.83	+0.6
5,317,277	-		GFF5324	0.83	-1.5
5,317,307	-		GFF5324	0.85	-2.6
5,317,371	+		GFF5324	0.89	-0.5
5,317,400	+				-1.1
5,317,400	+				-0.3
5,317,400	-				-1.1
5,317,400	-				-0.8
5,317,421	+				-0.8
5,317,444	+				-0.3
5,317,455	+				+0.1
5,317,455	+				-1.1
5,317,458	-				-1.2
5,317,463	+				-0.6
5,317,463	-				-0.4
5,317,463	-				-2.7
5,317,488	+				+0.4
5,317,493	-				-0.7
5,317,534	+				-0.3
5,317,534	+				+1.3
5,317,534	-				+0.7
5,317,548	+				+1.2
5,317,548	+				-0.3
5,317,548	+				-0.5
5,317,548	+				-0.6
5,317,555	+				+0.8
5,317,555	+				-1.9
5,317,555	+				-1.4
5,317,555	+				-0.8
5,317,555	-				+0.2
5,317,555	-				-0.0
5,317,556	-				-0.3
5,317,563	-				+0.2
5,317,571	+				-0.9
5,317,571	+				+1.0
5,317,571	+				-0.2
5,317,579	-				-0.8
5,317,579	-				-1.0
5,317,591	-				-0.3
5,317,591	-				+0.3
5,317,614	+				-0.0
5,317,620	+				-1.7
5,317,628	+				+0.0
5,317,628	+				+0.4
5,317,628	+				-2.3
5,317,636	-				-0.4
5,317,638	+				+0.6
5,317,638	+				-1.0
5,317,638	+				-0.7
5,317,638	+				-0.3
5,317,638	+				-0.2
5,317,638	+				-0.9
5,317,638	+				-0.3
5,317,638	+				-0.0
5,317,638	+				+0.2
5,317,638	+				-2.7
5,317,638	+				-1.5
5,317,638	+				-0.3
5,317,638	+				+0.1
5,317,638	+				+0.2
5,317,641	-				-1.7
5,317,646	-				-3.0
5,317,646	-				-1.4
5,317,646	-				-0.9
5,317,646	-				+0.2
5,317,646	-				+0.0
5,317,646	-				+0.2
5,317,646	-				-0.6
5,317,646	-				-0.2
5,317,646	-				-1.0
5,317,646	-				-1.5
5,317,646	-				-1.0
5,317,646	-				-1.7
5,317,646	-				-0.4
5,317,646	-				+0.2
5,317,646	-				-0.2
5,317,646	-				-1.3
5,317,646	-				-2.8
5,317,679	+				+0.8
5,317,679	+				+0.2
5,317,679	+				-0.6
5,317,687	-				-0.7
5,317,708	+				+0.3
5,317,711	+				-2.2
5,317,713	+				-0.4
5,317,713	+				-0.5
5,317,713	+				-0.3
5,317,713	+				+0.1
5,317,713	+				+0.5
5,317,714	+				-2.8
5,317,718	+				-0.1
5,317,721	-				-1.8
5,317,721	-				-1.7
5,317,721	-				-0.0
5,317,721	-				+1.1
5,317,721	-				-1.7
5,317,721	-				+0.6
5,317,751	+				-1.6
5,317,758	+				+0.7
5,317,766	-				+0.1
5,317,785	+				-1.2
5,317,795	+				+0.1
5,317,811	+				-1.7
5,317,811	+				-0.6
5,317,819	-				-0.8
5,317,832	+				+0.1
5,317,841	+				-0.2
5,317,846	+				-1.2
5,317,849	+				-0.1
5,317,851	+				+1.2
5,317,851	+				-0.5
5,317,851	+				-1.6
5,317,857	-				-0.8
5,317,857	-				-0.0
5,317,859	-				-2.3
5,317,859	-				-0.1
5,317,859	-				+0.1
5,317,859	-				-0.8
5,317,873	+		GFF5325	0.12	-0.5
5,317,883	+		GFF5325	0.14	-0.3
5,317,883	+		GFF5325	0.14	-0.1
5,317,884	+		GFF5325	0.14	-1.3
5,317,891	-		GFF5325	0.15	-0.1
5,317,893	-		GFF5325	0.15	+0.7
5,317,912	-		GFF5325	0.19	+0.1
5,317,915	+		GFF5325	0.19	-0.3
5,317,920	+		GFF5325	0.20	+0.1
5,317,928	+		GFF5325	0.21	-0.6
5,317,928	+		GFF5325	0.21	-0.2
5,317,928	+		GFF5325	0.21	-1.4
5,317,928	+		GFF5325	0.21	-0.8
5,317,928	+		GFF5325	0.21	+0.2
5,317,928	+		GFF5325	0.21	-0.1
5,317,928	+		GFF5325	0.21	+0.2
5,317,928	+		GFF5325	0.21	+0.2
5,317,929	+		GFF5325	0.21	-1.5
5,317,936	-		GFF5325	0.23	+0.2
5,317,936	-		GFF5325	0.23	+0.1
5,317,936	-		GFF5325	0.23	-0.1
5,317,937	-		GFF5325	0.23	-1.1
5,317,937	-		GFF5325	0.23	-0.9
5,317,937	-		GFF5325	0.23	+0.5
5,317,939	+		GFF5325	0.23	+0.3
5,317,939	+		GFF5325	0.23	-2.2
5,317,939	+		GFF5325	0.23	-1.1
5,317,939	+		GFF5325	0.23	-0.6
5,317,939	+		GFF5325	0.23	+0.4
5,317,947	-		GFF5325	0.24	-2.1
5,317,947	-		GFF5325	0.24	-0.0
5,317,947	-		GFF5325	0.24	+0.8
5,317,947	-		GFF5325	0.24	-0.4
5,317,947	-		GFF5325	0.24	-0.3
5,317,947	-		GFF5325	0.24	-0.8
5,317,947	-		GFF5325	0.24	+0.5
5,317,947	-		GFF5325	0.24	-1.3
5,317,947	-		GFF5325	0.24	-0.8
5,317,957	+		GFF5325	0.26	-1.7
5,317,972	-		GFF5325	0.29	+0.1
5,317,972	-		GFF5325	0.29	-0.0
5,317,978	-		GFF5325	0.30	-0.3
5,317,983	-		GFF5325	0.30	+0.5
5,317,992	-		GFF5325	0.32	-1.4
5,317,997	-		GFF5325	0.33	+1.0
5,318,005	+		GFF5325	0.34	-0.5
5,318,005	+		GFF5325	0.34	-0.2
5,318,013	-		GFF5325	0.35	+0.5
5,318,042	+		GFF5325	0.40	-0.1
5,318,075	+		GFF5325	0.46	+0.4
5,318,086	+		GFF5325	0.48	-2.3
5,318,102	+		GFF5325	0.50	+0.4
5,318,110	+		GFF5325	0.52	-1.7
5,318,110	-		GFF5325	0.52	+0.6
5,318,115	-		GFF5325	0.53	-0.3
5,318,120	-		GFF5325	0.53	-0.9
5,318,125	+		GFF5325	0.54	-0.6
5,318,126	+		GFF5325	0.54	+1.1
5,318,126	+		GFF5325	0.54	-0.2
5,318,133	+		GFF5325	0.56	-1.4
5,318,133	+		GFF5325	0.56	-1.7
5,318,141	-		GFF5325	0.57	+0.6
5,318,141	-		GFF5325	0.57	-0.6
5,318,148	-		GFF5325	0.58	-0.9
5,318,166	-		GFF5325	0.61	+0.6
5,318,173	+		GFF5325	0.62	-1.2
5,318,176	-		GFF5325	0.63	-0.3
5,318,184	+		GFF5325	0.64	-0.3
5,318,184	+		GFF5325	0.64	-3.0
5,318,184	+		GFF5325	0.64	-1.8
5,318,192	-		GFF5325	0.65	-0.8
5,318,192	-		GFF5325	0.65	-0.5
5,318,192	-		GFF5325	0.65	+1.0
5,318,192	-		GFF5325	0.65	-0.7
5,318,192	-		GFF5325	0.65	+1.7
5,318,192	-		GFF5325	0.65	+1.4
5,318,192	-		GFF5325	0.65	+1.8
5,318,192	-		GFF5325	0.65	-0.7
5,318,192	-		GFF5325	0.65	-0.3
5,318,192	-		GFF5325	0.65	+0.1
5,318,192	-		GFF5325	0.65	+0.8
5,318,234	-		GFF5325	0.72	-1.2
5,318,234	-		GFF5325	0.72	-0.3
5,318,234	-		GFF5325	0.72	+0.5
5,318,234	-		GFF5325	0.72	-1.3
5,318,245	+		GFF5325	0.74	-0.5
5,318,245	-		GFF5325	0.74	+0.2
5,318,253	-		GFF5325	0.76	-1.3
5,318,253	-		GFF5325	0.76	-2.3
5,318,253	-		GFF5325	0.76	-0.3
5,318,284	+		GFF5325	0.81	+0.4
5,318,302	-		GFF5325	0.84	-1.1
5,318,325	+		GFF5325	0.88	-0.7
5,318,325	+		GFF5325	0.88	-0.2
5,318,325	+		GFF5325	0.88	-2.3
5,318,325	+		GFF5325	0.88	-2.0
5,318,325	+		GFF5325	0.88	-0.5
5,318,325	+		GFF5325	0.88	+0.0
5,318,325	+		GFF5325	0.88	-0.5
5,318,327	+		GFF5325	0.88	-0.7
5,318,333	-		GFF5325	0.89	+0.1
5,318,333	-		GFF5325	0.89	-2.0
5,318,333	-		GFF5325	0.89	-0.7
5,318,333	-		GFF5325	0.89	-0.8
5,318,333	-		GFF5325	0.89	-0.6
5,318,333	-		GFF5325	0.89	+0.1
5,318,333	-		GFF5325	0.89	-2.2
5,318,333	-		GFF5325	0.89	-1.2
5,318,333	-		GFF5325	0.89	-0.3
5,318,333	-		GFF5325	0.89	-0.8
5,318,339	+		GFF5325	0.90	-0.0
5,318,339	+		GFF5325	0.90	-0.8
5,318,339	+		GFF5325	0.90	-0.4
5,318,356	-				+0.4
5,318,356	-				-2.2
5,318,356	-				-0.1
5,318,357	-				+0.2
5,318,359	+				-0.7
5,318,359	+				-0.2
5,318,363	+				-0.6
5,318,369	+				-0.4
5,318,369	+				+0.1
5,318,374	+				+0.1
5,318,377	-				-1.6
5,318,384	+				+0.4
5,318,384	+				-0.8
5,318,384	+				+0.4
5,318,384	+				+0.1
5,318,384	+				-0.7
5,318,384	-				-0.9
5,318,392	-				-1.6
5,318,392	-				-0.4
5,318,392	-				-1.9
5,318,392	-				+0.2
5,318,392	-				-2.5
5,318,395	+				+0.1
5,318,395	+				-1.5
5,318,400	+				-2.1
5,318,412	+				-0.8
5,318,412	+				-0.1
5,318,412	+				-0.3
5,318,417	+				-0.5
5,318,422	+				-0.9
5,318,422	+				+0.4
5,318,422	+				+0.3
5,318,422	+				+1.0
5,318,425	-				-0.5
5,318,430	-				-2.5
5,318,430	-				+0.8
5,318,430	-				-0.5
5,318,430	-				+0.1
5,318,475	+				+0.1
5,318,489	+				-0.0
5,318,490	+				+0.8
5,318,494	+				-1.2
5,318,504	+				-1.3
5,318,504	+				+1.0
5,318,512	-				-0.4
5,318,522	+				+0.3
5,318,536	+				-1.1
5,318,608	+				+0.3
5,318,616	-				+0.3
5,318,661	+				-0.0
5,318,661	+				-1.4
5,318,661	+				+0.2
5,318,669	-				+0.3
5,318,679	-				+0.5
5,318,690	+				-1.7
5,318,698	-				+0.8
5,318,698	-				-1.5
5,318,698	-				-1.2
5,318,702	+				-0.9
5,318,702	-				-0.3
5,318,710	-		GFF5326	0.11	-1.7
5,318,710	-		GFF5326	0.11	+0.7
5,318,722	+		GFF5326	0.13	-0.6
5,318,757	+		GFF5326	0.19	-2.0
5,318,757	+		GFF5326	0.19	+0.1
5,318,764	+		GFF5326	0.20	+0.4
5,318,764	+		GFF5326	0.20	-0.2
5,318,765	-		GFF5326	0.20	+0.9
5,318,772	+		GFF5326	0.21	-0.3
5,318,772	-		GFF5326	0.21	-0.2
5,318,783	+		GFF5326	0.23	+0.4
5,318,783	+		GFF5326	0.23	-0.3
5,318,783	+		GFF5326	0.23	-0.3
5,318,783	+		GFF5326	0.23	+0.3
5,318,783	+		GFF5326	0.23	+0.1
5,318,783	+		GFF5326	0.23	+0.2
5,318,783	+		GFF5326	0.23	-0.0
5,318,783	+		GFF5326	0.23	-0.1
5,318,791	-		GFF5326	0.25	+1.2
5,318,791	-		GFF5326	0.25	+0.3
5,318,791	-		GFF5326	0.25	-0.4
5,318,791	-		GFF5326	0.25	-2.8
5,318,791	-		GFF5326	0.25	-0.8
5,318,791	-		GFF5326	0.25	-0.2
5,318,791	-		GFF5326	0.25	-2.5
5,318,791	-		GFF5326	0.25	-0.6
5,318,791	-		GFF5326	0.25	+0.3
5,318,791	-		GFF5326	0.25	+0.3
5,318,793	+		GFF5326	0.25	-0.9
5,318,793	-		GFF5326	0.25	-0.7
5,318,793	-		GFF5326	0.25	+0.7
5,318,802	+		GFF5326	0.26	-0.2
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