Strain Fitness in Sphingobium sp. HT1-2 around GFF5318

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5316 and GFF5317 overlap by 23 nucleotidesGFF5317 and GFF5318 are separated by 109 nucleotidesGFF5318 and GFF5319 are separated by 159 nucleotidesGFF5319 and GFF5320 are separated by 2 nucleotidesGFF5320 and GFF5321 are separated by 93 nucleotides GFF5316 - Catalase KatE-intracellular protease (EC 1.11.1.6), at 5,309,791 to 5,311,254 GFF5316 GFF5317 - hypothetical protein, at 5,311,232 to 5,312,098 GFF5317 GFF5318 - hypothetical protein, at 5,312,208 to 5,312,426 GFF5318 GFF5319 - Mobile element protein, at 5,312,586 to 5,312,693 GFF5319 GFF5320 - Transposase, at 5,312,696 to 5,312,827 GFF5320 GFF5321 - ABC-type transport system involved in resistance to organic solvents, permease component, at 5,312,921 to 5,313,334 GFF5321 Position (kb) 5312 5313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5311.234 kb on + strandat 5311.251 kb on - strandat 5311.289 kb on - strandat 5311.294 kb on - strandat 5311.302 kb on + strandat 5311.310 kb on - strandat 5311.325 kb on + strand, within GFF5317at 5311.325 kb on + strand, within GFF5317at 5311.353 kb on - strand, within GFF5317at 5311.416 kb on + strand, within GFF5317at 5311.437 kb on + strand, within GFF5317at 5311.437 kb on + strand, within GFF5317at 5311.477 kb on - strand, within GFF5317at 5311.478 kb on - strand, within GFF5317at 5311.478 kb on - strand, within GFF5317at 5311.478 kb on - strand, within GFF5317at 5311.507 kb on + strand, within GFF5317at 5311.509 kb on - strand, within GFF5317at 5311.563 kb on - strand, within GFF5317at 5311.600 kb on - strand, within GFF5317at 5311.602 kb on - strand, within GFF5317at 5311.602 kb on - strand, within GFF5317at 5311.611 kb on + strand, within GFF5317at 5311.667 kb on - strand, within GFF5317at 5311.681 kb on - strand, within GFF5317at 5311.681 kb on - strand, within GFF5317at 5311.692 kb on - strand, within GFF5317at 5311.700 kb on - strand, within GFF5317at 5311.707 kb on + strand, within GFF5317at 5311.761 kb on + strand, within GFF5317at 5311.769 kb on - strand, within GFF5317at 5311.772 kb on - strand, within GFF5317at 5311.813 kb on + strand, within GFF5317at 5311.820 kb on - strand, within GFF5317at 5311.824 kb on + strand, within GFF5317at 5311.844 kb on - strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.868 kb on + strand, within GFF5317at 5311.874 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.876 kb on - strand, within GFF5317at 5311.905 kb on + strand, within GFF5317at 5311.908 kb on - strand, within GFF5317at 5311.915 kb on + strand, within GFF5317at 5311.916 kb on + strand, within GFF5317at 5311.934 kb on + strand, within GFF5317at 5311.943 kb on - strand, within GFF5317at 5311.968 kb on - strand, within GFF5317at 5312.013 kb on - strandat 5312.030 kb on - strandat 5312.059 kb on + strandat 5312.059 kb on + strandat 5312.067 kb on + strandat 5312.067 kb on + strandat 5312.067 kb on + strandat 5312.067 kb on + strandat 5312.067 kb on + strandat 5312.075 kb on - strandat 5312.075 kb on - strandat 5312.078 kb on + strandat 5312.078 kb on + strandat 5312.078 kb on + strandat 5312.114 kb on + strandat 5312.122 kb on - strandat 5312.122 kb on - strandat 5312.133 kb on - strandat 5312.148 kb on - strandat 5312.155 kb on + strandat 5312.163 kb on - strandat 5312.163 kb on - strandat 5312.200 kb on + strandat 5312.200 kb on + strandat 5312.200 kb on - strandat 5312.220 kb on + strandat 5312.220 kb on - strandat 5312.220 kb on - strandat 5312.220 kb on - strandat 5312.228 kb on - strandat 5312.228 kb on - strandat 5312.238 kb on + strand, within GFF5318at 5312.246 kb on + strand, within GFF5318at 5312.274 kb on + strand, within GFF5318at 5312.287 kb on - strand, within GFF5318at 5312.296 kb on + strand, within GFF5318at 5312.296 kb on + strand, within GFF5318at 5312.322 kb on - strand, within GFF5318at 5312.353 kb on + strand, within GFF5318at 5312.361 kb on - strand, within GFF5318at 5312.370 kb on + strand, within GFF5318at 5312.378 kb on + strand, within GFF5318at 5312.379 kb on - strand, within GFF5318at 5312.392 kb on + strand, within GFF5318at 5312.395 kb on - strand, within GFF5318at 5312.398 kb on + strand, within GFF5318at 5312.398 kb on + strand, within GFF5318at 5312.398 kb on + strand, within GFF5318at 5312.405 kb on - strandat 5312.406 kb on - strandat 5312.440 kb on - strandat 5312.477 kb on - strandat 5312.479 kb on - strandat 5312.490 kb on + strandat 5312.491 kb on + strandat 5312.510 kb on + strandat 5312.510 kb on - strandat 5312.534 kb on + strandat 5312.534 kb on + strandat 5312.539 kb on + strandat 5312.552 kb on - strandat 5312.894 kb on - strandat 5312.897 kb on + strandat 5312.910 kb on - strandat 5312.917 kb on + strandat 5312.948 kb on + strandat 5312.958 kb on + strandat 5312.976 kb on - strand, within GFF5321at 5312.993 kb on - strand, within GFF5321at 5313.008 kb on - strand, within GFF5321at 5313.014 kb on + strand, within GFF5321at 5313.022 kb on - strand, within GFF5321at 5313.022 kb on - strand, within GFF5321at 5313.030 kb on - strand, within GFF5321at 5313.042 kb on + strand, within GFF5321at 5313.048 kb on - strand, within GFF5321at 5313.048 kb on - strand, within GFF5321at 5313.057 kb on + strand, within GFF5321at 5313.065 kb on - strand, within GFF5321at 5313.067 kb on + strand, within GFF5321at 5313.067 kb on + strand, within GFF5321at 5313.074 kb on + strand, within GFF5321at 5313.075 kb on - strand, within GFF5321at 5313.075 kb on - strand, within GFF5321at 5313.075 kb on - strand, within GFF5321at 5313.075 kb on - strand, within GFF5321at 5313.085 kb on + strand, within GFF5321at 5313.085 kb on + strand, within GFF5321at 5313.091 kb on - strand, within GFF5321at 5313.093 kb on + strand, within GFF5321at 5313.093 kb on + strand, within GFF5321at 5313.093 kb on + strand, within GFF5321at 5313.093 kb on + strand, within GFF5321at 5313.093 kb on + strand, within GFF5321at 5313.093 kb on - strand, within GFF5321at 5313.098 kb on + strand, within GFF5321at 5313.098 kb on + strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.101 kb on - strand, within GFF5321at 5313.103 kb on + strand, within GFF5321at 5313.106 kb on - strand, within GFF5321at 5313.106 kb on - strand, within GFF5321at 5313.106 kb on - strand, within GFF5321at 5313.111 kb on - strand, within GFF5321at 5313.111 kb on - strand, within GFF5321at 5313.111 kb on - strand, within GFF5321at 5313.111 kb on - strand, within GFF5321at 5313.111 kb on - strand, within GFF5321at 5313.117 kb on + strand, within GFF5321at 5313.124 kb on + strand, within GFF5321at 5313.124 kb on + strand, within GFF5321at 5313.150 kb on + strand, within GFF5321at 5313.178 kb on - strand, within GFF5321at 5313.254 kb on - strand, within GFF5321at 5313.271 kb on + strand, within GFF5321at 5313.273 kb on - strand, within GFF5321at 5313.280 kb on - strand, within GFF5321at 5313.292 kb on + strand, within GFF5321at 5313.292 kb on + strand, within GFF5321at 5313.308 kb on - strandat 5313.318 kb on - strandat 5313.342 kb on + strandat 5313.342 kb on + strandat 5313.350 kb on - strandat 5313.350 kb on - strandat 5313.355 kb on - strandat 5313.355 kb on - strandat 5313.361 kb on + strandat 5313.398 kb on + strandat 5313.406 kb on + strandat 5313.414 kb on - strandat 5313.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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5,311,234 + -0.5
5,311,251 - -0.1
5,311,289 - -2.3
5,311,294 - +1.3
5,311,302 + -3.1
5,311,310 - +0.1
5,311,325 + GFF5317 0.11 +0.2
5,311,325 + GFF5317 0.11 -1.1
5,311,353 - GFF5317 0.14 +0.1
5,311,416 + GFF5317 0.21 +0.6
5,311,437 + GFF5317 0.24 -0.5
5,311,437 + GFF5317 0.24 +0.1
5,311,477 - GFF5317 0.28 -0.5
5,311,478 - GFF5317 0.28 -0.3
5,311,478 - GFF5317 0.28 +0.3
5,311,478 - GFF5317 0.28 +0.7
5,311,507 + GFF5317 0.32 -0.7
5,311,509 - GFF5317 0.32 -0.8
5,311,563 - GFF5317 0.38 -1.1
5,311,600 - GFF5317 0.42 +0.4
5,311,602 - GFF5317 0.43 +0.7
5,311,602 - GFF5317 0.43 -0.4
5,311,611 + GFF5317 0.44 -1.6
5,311,667 - GFF5317 0.50 -1.8
5,311,681 - GFF5317 0.52 +0.2
5,311,681 - GFF5317 0.52 +0.8
5,311,692 - GFF5317 0.53 -0.8
5,311,700 - GFF5317 0.54 -0.3
5,311,707 + GFF5317 0.55 -1.5
5,311,761 + GFF5317 0.61 +0.5
5,311,769 - GFF5317 0.62 +0.1
5,311,772 - GFF5317 0.62 -0.9
5,311,813 + GFF5317 0.67 -1.0
5,311,820 - GFF5317 0.68 +0.3
5,311,824 + GFF5317 0.68 -1.1
5,311,844 - GFF5317 0.71 +0.7
5,311,868 + GFF5317 0.73 -0.7
5,311,868 + GFF5317 0.73 +2.0
5,311,868 + GFF5317 0.73 +0.0
5,311,868 + GFF5317 0.73 +0.6
5,311,868 + GFF5317 0.73 +0.6
5,311,868 + GFF5317 0.73 -1.3
5,311,868 + GFF5317 0.73 +0.8
5,311,874 - GFF5317 0.74 +0.8
5,311,876 - GFF5317 0.74 +1.3
5,311,876 - GFF5317 0.74 +0.8
5,311,876 - GFF5317 0.74 +0.5
5,311,876 - GFF5317 0.74 +0.1
5,311,876 - GFF5317 0.74 -0.8
5,311,876 - GFF5317 0.74 -1.5
5,311,876 - GFF5317 0.74 +0.7
5,311,876 - GFF5317 0.74 -0.2
5,311,876 - GFF5317 0.74 -0.5
5,311,876 - GFF5317 0.74 -0.7
5,311,876 - GFF5317 0.74 +0.4
5,311,876 - GFF5317 0.74 +0.8
5,311,876 - GFF5317 0.74 +0.4
5,311,876 - GFF5317 0.74 +0.5
5,311,905 + GFF5317 0.78 -0.7
5,311,908 - GFF5317 0.78 -0.4
5,311,915 + GFF5317 0.79 +0.3
5,311,916 + GFF5317 0.79 -0.1
5,311,934 + GFF5317 0.81 -0.5
5,311,943 - GFF5317 0.82 -0.5
5,311,968 - GFF5317 0.85 -2.2
5,312,013 - -0.9
5,312,030 - -0.3
5,312,059 + -0.8
5,312,059 + +0.8
5,312,067 + -0.1
5,312,067 + -0.2
5,312,067 + +0.1
5,312,067 + +0.1
5,312,067 + +0.1
5,312,075 - +0.7
5,312,075 - -0.7
5,312,078 + +0.1
5,312,078 + +1.2
5,312,078 + -1.7
5,312,114 + -0.6
5,312,122 - -1.8
5,312,122 - +0.1
5,312,133 - -0.5
5,312,148 - -0.6
5,312,155 + +0.8
5,312,163 - +0.9
5,312,163 - +1.0
5,312,200 + -0.5
5,312,200 + -0.5
5,312,200 - -1.4
5,312,220 + -0.1
5,312,220 - -0.4
5,312,220 - -1.5
5,312,220 - +0.5
5,312,228 - +0.7
5,312,228 - -1.1
5,312,238 + GFF5318 0.14 +0.6
5,312,246 + GFF5318 0.17 +1.0
5,312,274 + GFF5318 0.30 +0.9
5,312,287 - GFF5318 0.36 +0.4
5,312,296 + GFF5318 0.40 -0.1
5,312,296 + GFF5318 0.40 -0.3
5,312,322 - GFF5318 0.52 +0.7
5,312,353 + GFF5318 0.66 -0.4
5,312,361 - GFF5318 0.70 -0.1
5,312,370 + GFF5318 0.74 +0.5
5,312,378 + GFF5318 0.78 -0.9
5,312,379 - GFF5318 0.78 -0.5
5,312,392 + GFF5318 0.84 -1.6
5,312,395 - GFF5318 0.85 -0.9
5,312,398 + GFF5318 0.87 -0.8
5,312,398 + GFF5318 0.87 -1.7
5,312,398 + GFF5318 0.87 -0.8
5,312,405 - +1.5
5,312,406 - +1.1
5,312,440 - +0.4
5,312,477 - -0.5
5,312,479 - +0.7
5,312,490 + -1.7
5,312,491 + -0.1
5,312,510 + +0.8
5,312,510 - +0.1
5,312,534 + +0.3
5,312,534 + -0.8
5,312,539 + -2.3
5,312,552 - +0.7
5,312,894 - -0.6
5,312,897 + +0.1
5,312,910 - -1.7
5,312,917 + -0.2
5,312,948 + -0.4
5,312,958 + -1.1
5,312,976 - GFF5321 0.13 -2.1
5,312,993 - GFF5321 0.17 +1.0
5,313,008 - GFF5321 0.21 -1.4
5,313,014 + GFF5321 0.22 -0.0
5,313,022 - GFF5321 0.24 -2.3
5,313,022 - GFF5321 0.24 -1.9
5,313,030 - GFF5321 0.26 +0.5
5,313,042 + GFF5321 0.29 -0.8
5,313,048 - GFF5321 0.31 -0.3
5,313,048 - GFF5321 0.31 +0.8
5,313,057 + GFF5321 0.33 -2.4
5,313,065 - GFF5321 0.35 +0.3
5,313,067 + GFF5321 0.35 -2.8
5,313,067 + GFF5321 0.35 -2.1
5,313,074 + GFF5321 0.37 -1.5
5,313,075 - GFF5321 0.37 -1.1
5,313,075 - GFF5321 0.37 -0.8
5,313,075 - GFF5321 0.37 +0.4
5,313,075 - GFF5321 0.37 -0.3
5,313,085 + GFF5321 0.40 +0.7
5,313,085 + GFF5321 0.40 -1.8
5,313,091 - GFF5321 0.41 -1.5
5,313,093 + GFF5321 0.42 +0.4
5,313,093 + GFF5321 0.42 -0.5
5,313,093 + GFF5321 0.42 -0.7
5,313,093 + GFF5321 0.42 -1.2
5,313,093 + GFF5321 0.42 -1.5
5,313,093 - GFF5321 0.42 -0.7
5,313,098 + GFF5321 0.43 -0.2
5,313,098 + GFF5321 0.43 +1.0
5,313,101 - GFF5321 0.43 -0.5
5,313,101 - GFF5321 0.43 -0.7
5,313,101 - GFF5321 0.43 -0.8
5,313,101 - GFF5321 0.43 -0.3
5,313,101 - GFF5321 0.43 -2.1
5,313,101 - GFF5321 0.43 +0.9
5,313,101 - GFF5321 0.43 -0.0
5,313,101 - GFF5321 0.43 -0.5
5,313,101 - GFF5321 0.43 -1.7
5,313,103 + GFF5321 0.44 -0.3
5,313,106 - GFF5321 0.45 +0.2
5,313,106 - GFF5321 0.45 -0.9
5,313,106 - GFF5321 0.45 +0.1
5,313,111 - GFF5321 0.46 -0.5
5,313,111 - GFF5321 0.46 +0.4
5,313,111 - GFF5321 0.46 -0.1
5,313,111 - GFF5321 0.46 +0.5
5,313,111 - GFF5321 0.46 -0.1
5,313,117 + GFF5321 0.47 -0.1
5,313,124 + GFF5321 0.49 -1.9
5,313,124 + GFF5321 0.49 +0.3
5,313,150 + GFF5321 0.55 +0.7
5,313,178 - GFF5321 0.62 -1.3
5,313,254 - GFF5321 0.80 -1.8
5,313,271 + GFF5321 0.85 -1.6
5,313,273 - GFF5321 0.85 -0.5
5,313,280 - GFF5321 0.87 +0.1
5,313,292 + GFF5321 0.90 -2.3
5,313,292 + GFF5321 0.90 -2.2
5,313,308 - -0.3
5,313,318 - +1.2
5,313,342 + -1.7
5,313,342 + -0.9
5,313,350 - -0.9
5,313,350 - -0.4
5,313,355 - -0.1
5,313,355 - +0.7
5,313,361 + -0.1
5,313,398 + -2.3
5,313,406 + -2.9
5,313,414 - -1.4
5,313,414 - +0.5

Or see this region's nucleotide sequence