Strain Fitness in Sphingobium sp. HT1-2 around GFF5148

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,140,544	+				-0.5
5,140,557	-				+0.1
5,140,567	+				-1.5
5,140,579	-				+0.7
5,140,595	-				-2.8
5,140,602	+				+1.9
5,140,620	-				+0.4
5,140,650	-				+1.1
5,140,650	-				-2.1
5,140,650	-				+1.6
5,140,714	+		GFF5147	0.10	-0.0
5,140,722	-		GFF5147	0.11	+1.7
5,140,722	-		GFF5147	0.11	+1.4
5,140,722	-		GFF5147	0.11	-1.1
5,140,726	+		GFF5147	0.11	-0.3
5,140,730	+		GFF5147	0.12	+0.2
5,140,732	+		GFF5147	0.12	-1.6
5,140,734	-		GFF5147	0.12	-1.5
5,140,734	-		GFF5147	0.12	-0.3
5,140,765	+		GFF5147	0.16	-0.1
5,140,765	+		GFF5147	0.16	-0.5
5,140,768	-		GFF5147	0.16	+0.1
5,140,773	-		GFF5147	0.17	-0.3
5,140,779	-		GFF5147	0.17	-0.7
5,140,867	-		GFF5147	0.27	+0.3
5,140,867	-		GFF5147	0.27	-0.4
5,140,867	-		GFF5147	0.27	-0.8
5,140,919	+		GFF5147	0.33	-0.6
5,140,924	+		GFF5147	0.34	+0.6
5,140,965	-		GFF5147	0.39	-0.2
5,141,022	+		GFF5147	0.45	+0.6
5,141,027	+		GFF5147	0.46	-2.3
5,141,027	+		GFF5147	0.46	-0.2
5,141,027	+		GFF5147	0.46	+1.3
5,141,030	-		GFF5147	0.46	-1.7
5,141,035	-		GFF5147	0.47	-1.1
5,141,035	-		GFF5147	0.47	-0.2
5,141,077	-		GFF5147	0.51	-1.7
5,141,080	-		GFF5147	0.52	+1.1
5,141,118	+		GFF5147	0.56	-0.2
5,141,118	+		GFF5147	0.56	+0.7
5,141,135	+		GFF5147	0.58	-0.1
5,141,189	+		GFF5147	0.64	-1.4
5,141,269	+		GFF5147	0.73	+0.4
5,141,279	+		GFF5147	0.74	-0.0
5,141,279	+		GFF5147	0.74	-0.4
5,141,279	+		GFF5147	0.74	+0.7
5,141,279	+		GFF5147	0.74	+0.5
5,141,279	+		GFF5147	0.74	+0.8
5,141,279	+		GFF5147	0.74	-0.8
5,141,291	+		GFF5147	0.76	+0.5
5,141,348	+		GFF5147	0.82	-0.6
5,141,356	-		GFF5147	0.83	+0.3
5,141,384	+		GFF5147	0.86	-1.8
5,141,384	+		GFF5147	0.86	-0.7
5,141,392	-		GFF5147	0.87	-0.7
5,141,392	-		GFF5147	0.87	-0.5
5,141,402	+		GFF5147	0.88	+0.9
5,141,416	-		GFF5147	0.90	+0.5
5,141,423	-				-0.3
5,141,423	-				+0.7
5,141,450	-				-0.1
5,141,458	+				+0.1
5,141,458	+				-0.0
5,141,464	+				-1.7
5,141,466	-				-0.9
5,141,466	-				+0.6
5,141,471	+				-0.4
5,141,471	+				+0.9
5,141,471	+				-1.8
5,141,476	+				+0.2
5,141,476	+				+1.0
5,141,484	-				-0.0
5,141,495	+				-1.1
5,141,495	+				+0.2
5,141,500	+				+1.0
5,141,503	-				+1.1
5,141,505	+				-1.3
5,141,505	+				-0.1
5,141,508	-				-2.0
5,141,514	+				+0.3
5,141,514	+				+0.2
5,141,522	-				+0.9
5,141,531	+				+1.1
5,141,536	+				-0.8
5,141,539	-				+0.0
5,141,540	-				+0.2
5,141,544	-				-0.4
5,141,544	-				-0.5
5,141,562	-				+0.4
5,141,564	+				+1.0
5,141,564	+				-1.1
5,141,572	-				+1.9
5,141,572	-				+0.7
5,141,572	-				+1.0
5,141,572	-				-1.0
5,141,572	-				-0.5
5,141,607	-				-0.4
5,141,657	+		GFF5148	0.12	+0.7
5,141,671	-		GFF5148	0.14	-0.3
5,141,717	+		GFF5148	0.19	+1.6
5,141,755	+		GFF5148	0.23	+0.0
5,141,758	-		GFF5148	0.23	-0.5
5,141,831	+		GFF5148	0.31	-0.3
5,141,871	+		GFF5148	0.35	+0.0
5,141,871	+		GFF5148	0.35	+0.9
5,141,871	+		GFF5148	0.35	-1.0
5,141,871	+		GFF5148	0.35	-0.1
5,141,871	+		GFF5148	0.35	-1.6
5,141,871	+		GFF5148	0.35	+0.4
5,141,879	-		GFF5148	0.36	-1.1
5,141,879	-		GFF5148	0.36	+0.3
5,141,879	-		GFF5148	0.36	+0.1
5,141,963	-		GFF5148	0.45	+0.4
5,141,968	-		GFF5148	0.45	-0.9
5,141,970	+		GFF5148	0.45	+0.4
5,141,973	-		GFF5148	0.46	-0.8
5,141,991	+		GFF5148	0.48	-1.0
5,142,020	-		GFF5148	0.51	+0.6
5,142,103	-		GFF5148	0.59	+0.8
5,142,103	-		GFF5148	0.59	+1.3
5,142,113	+		GFF5148	0.61	+0.7
5,142,115	+		GFF5148	0.61	+0.0
5,142,149	-		GFF5148	0.64	-0.1
5,142,185	+		GFF5148	0.68	-1.8
5,142,214	+		GFF5148	0.71	-1.8
5,142,214	+		GFF5148	0.71	+0.5
5,142,214	+		GFF5148	0.71	+0.8
5,142,249	-		GFF5148	0.75	+0.5
5,142,268	+		GFF5148	0.77	-1.0
5,142,268	+		GFF5148	0.77	-1.1
5,142,268	+		GFF5148	0.77	-0.8
5,142,268	-		GFF5148	0.77	-0.9
5,142,269	-		GFF5148	0.77	-0.8
5,142,273	+		GFF5148	0.77	-1.5
5,142,276	-		GFF5148	0.78	-0.6
5,142,276	-		GFF5148	0.78	-0.4
5,142,276	-		GFF5148	0.78	-1.7
5,142,277	-		GFF5148	0.78	-0.5
5,142,281	-		GFF5148	0.78	+0.1
5,142,285	-		GFF5148	0.79	-2.1
5,142,296	+		GFF5148	0.80	-0.1
5,142,296	+		GFF5148	0.80	-1.4
5,142,296	+		GFF5148	0.80	+1.0
5,142,296	+		GFF5148	0.80	-1.6
5,142,298	-		GFF5148	0.80	-1.3
5,142,304	-		GFF5148	0.81	+0.7
5,142,304	-		GFF5148	0.81	-2.0
5,142,304	-		GFF5148	0.81	-0.0
5,142,304	-		GFF5148	0.81	-0.3
5,142,308	+		GFF5148	0.81	-0.5
5,142,308	+		GFF5148	0.81	+1.1
5,142,308	+		GFF5148	0.81	-1.0
5,142,313	+		GFF5148	0.82	+1.4
5,142,313	+		GFF5148	0.82	-1.0
5,142,316	-		GFF5148	0.82	-0.6
5,142,321	-		GFF5148	0.82	-0.0
5,142,322	+		GFF5148	0.83	+1.2
5,142,329	-		GFF5148	0.83	-1.3
5,142,329	-		GFF5148	0.83	-0.4
5,142,335	+		GFF5148	0.84	-0.7
5,142,335	+		GFF5148	0.84	-1.1
5,142,335	+		GFF5148	0.84	-0.1
5,142,356	+		GFF5148	0.86	+0.3
5,142,356	+		GFF5148	0.86	-0.1
5,142,356	+		GFF5148	0.86	+0.4
5,142,356	+		GFF5148	0.86	-1.2
5,142,356	+		GFF5148	0.86	-1.7
5,142,356	+		GFF5148	0.86	-0.1
5,142,356	+		GFF5148	0.86	+0.2
5,142,364	-		GFF5148	0.87	+0.9
5,142,364	-		GFF5148	0.87	-1.7
5,142,364	-		GFF5148	0.87	-0.1
5,142,374	-		GFF5148	0.88	-2.1
5,142,374	-		GFF5148	0.88	+0.7
5,142,409	-				+1.4
5,142,427	+				-1.4
5,142,427	+				+0.3
5,142,427	+				-0.3
5,142,427	+				-1.0
5,142,427	+				-2.1
5,142,427	+				-1.8
5,142,435	-				+1.4
5,142,435	-				+1.4
5,142,435	-				-0.4
5,142,435	-				+0.0
5,142,435	-				+0.4
5,142,435	-				-0.0
5,142,435	-				+0.5
5,142,435	-				-1.1
5,142,435	-				-2.2
5,142,437	+				-1.9
5,142,437	+				+0.6
5,142,445	+				-0.4
5,142,459	+				-1.4
5,142,459	+				-0.1
5,142,562	-		GFF5149	0.11	-1.5
5,142,562	-		GFF5149	0.11	-2.7
5,142,679	+		GFF5149	0.31	-0.5
5,142,762	+		GFF5149	0.44	-1.0
5,142,789	-		GFF5149	0.49	-0.5
5,142,796	+		GFF5149	0.50	-0.2
5,142,796	+		GFF5149	0.50	-0.7
5,142,804	-		GFF5149	0.51	-0.3
5,142,804	-		GFF5149	0.51	-1.1
5,142,804	-		GFF5149	0.51	-0.5
5,142,809	-		GFF5149	0.52	-0.0
5,142,829	+		GFF5149	0.55	-1.5
5,142,829	+		GFF5149	0.55	-0.1
5,142,829	+		GFF5149	0.55	+0.1
5,142,829	+		GFF5149	0.55	-0.6
5,142,834	+		GFF5149	0.56	-3.4
5,142,837	-		GFF5149	0.57	-0.7
5,142,837	-		GFF5149	0.57	-0.0
5,142,837	-		GFF5149	0.57	+0.3
5,142,837	-		GFF5149	0.57	-0.4
5,142,839	+		GFF5149	0.57	+0.9
5,142,839	+		GFF5149	0.57	-2.9
5,142,839	+		GFF5149	0.57	+0.1
5,142,839	+		GFF5149	0.57	-0.5
5,142,844	+		GFF5149	0.58	-1.5
5,142,844	+		GFF5149	0.58	+0.3
5,142,864	+		GFF5149	0.61	+0.4
5,142,866	+		GFF5149	0.61	-0.4
5,142,874	-		GFF5149	0.63	-1.1
5,142,874	-		GFF5149	0.63	+0.1
5,142,907	-		GFF5149	0.68	+0.3
5,142,907	-		GFF5149	0.68	-0.1
5,142,907	-		GFF5149	0.68	-1.0
5,142,907	-		GFF5149	0.68	-0.9
5,142,907	-		GFF5149	0.68	-2.2
5,142,907	-		GFF5149	0.68	-2.1
5,142,907	-		GFF5149	0.68	-0.1
5,142,907	-		GFF5149	0.68	+1.0
5,142,907	-		GFF5149	0.68	-0.6
5,142,907	-		GFF5149	0.68	-0.8
5,142,907	-		GFF5149	0.68	-0.5
5,142,938	+		GFF5149	0.73	-1.0
5,142,944	+		GFF5149	0.74	-1.0
5,142,971	-		GFF5149	0.79	+0.3
5,143,016	+		GFF5149	0.86	-1.1
5,143,036	+		GFF5149	0.89	-0.9
5,143,036	+		GFF5149	0.89	-0.4
5,143,051	+				-1.2
5,143,051	+				-0.9
5,143,051	+				-1.6
5,143,052	-				+0.0
5,143,053	+				-2.9
5,143,059	-				-0.1
5,143,059	-				-2.5
5,143,059	-				+0.4
5,143,074	+				+0.4
5,143,087	+				+0.6
5,143,087	+				-1.5
5,143,087	+				-0.7
5,143,087	+				-1.3
5,143,087	+				-0.0
5,143,087	+				-2.8
5,143,095	-				-0.7
5,143,095	-				-1.1
5,143,095	-				-0.7
5,143,095	-				-1.6
5,143,095	-				+0.6
5,143,095	-				-0.6
5,143,095	-				+0.2
5,143,095	-				-1.8
5,143,095	-				-0.3
5,143,095	-				-0.3
5,143,095	-				-0.3
5,143,095	-				-0.9
5,143,102	+				-2.0
5,143,102	+				+0.1
5,143,102	+				+0.2
5,143,102	+				-1.1
5,143,108	+				-0.2
5,143,110	+				+0.1
5,143,117	-				-1.7
5,143,119	+				-0.2
5,143,119	+				-0.0
5,143,119	+				-0.4
5,143,119	+				-0.2
5,143,119	+				-0.5
5,143,127	-				+0.4
5,143,127	-				-1.0
5,143,140	+				-0.8
5,143,140	+				-1.8
5,143,148	-				-2.2
5,143,186	+				-1.6
5,143,192	-				-2.1
5,143,213	+				-0.6
5,143,221	-				-0.9
5,143,242	-				+0.3
5,143,242	-				-2.0
5,143,247	+				+0.2
5,143,268	-				+0.1
5,143,293	+				-2.6
5,143,295	-				-2.6
5,143,295	-				-1.6
5,143,301	-				+0.6
5,143,315	-				-0.1
5,143,334	-		GFF5150	0.12	+0.2
5,143,344	-		GFF5150	0.13	-0.4
5,143,397	-		GFF5150	0.19	-1.0
5,143,415	+		GFF5150	0.21	-0.4
5,143,423	-		GFF5150	0.22	-1.2
5,143,429	-		GFF5150	0.23	-1.5
5,143,484	+		GFF5150	0.30	+0.3
5,143,485	+		GFF5150	0.30	-0.8
5,143,485	+		GFF5150	0.30	+1.5