Strain Fitness in Sphingobium sp. HT1-2 around GFF5128

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,118,295	+		GFF5126	0.70	-2.3
5,118,305	+		GFF5126	0.71	-0.3
5,118,306	-		GFF5126	0.71	+1.4
5,118,308	+		GFF5126	0.71	-2.1
5,118,347	-		GFF5126	0.74	+0.0
5,118,349	+		GFF5126	0.74	-0.7
5,118,349	+		GFF5126	0.74	-0.2
5,118,349	+		GFF5126	0.74	-0.5
5,118,349	+		GFF5126	0.74	+1.1
5,118,349	+		GFF5126	0.74	+0.9
5,118,349	+		GFF5126	0.74	+1.2
5,118,349	+		GFF5126	0.74	+0.3
5,118,349	+		GFF5126	0.74	-0.7
5,118,349	+		GFF5126	0.74	+0.4
5,118,349	+		GFF5126	0.74	-0.6
5,118,349	+		GFF5126	0.74	-0.1
5,118,349	+		GFF5126	0.74	+0.1
5,118,352	-		GFF5126	0.74	-1.3
5,118,354	+		GFF5126	0.75	-0.2
5,118,354	+		GFF5126	0.75	-0.6
5,118,357	-		GFF5126	0.75	-1.2
5,118,357	-		GFF5126	0.75	-0.2
5,118,357	-		GFF5126	0.75	+1.1
5,118,357	-		GFF5126	0.75	+1.5
5,118,357	-		GFF5126	0.75	+0.4
5,118,357	-		GFF5126	0.75	+0.2
5,118,357	-		GFF5126	0.75	-2.1
5,118,357	-		GFF5126	0.75	+0.3
5,118,362	-		GFF5126	0.75	+1.0
5,118,362	-		GFF5126	0.75	-0.7
5,118,379	-		GFF5126	0.76	-0.6
5,118,387	+		GFF5126	0.77	+0.1
5,118,387	+		GFF5126	0.77	+0.8
5,118,389	-		GFF5126	0.77	-0.5
5,118,392	+		GFF5126	0.77	-0.6
5,118,392	+		GFF5126	0.77	+0.7
5,118,400	+		GFF5126	0.78	-1.4
5,118,400	-		GFF5126	0.78	+0.7
5,118,409	-		GFF5126	0.79	-1.6
5,118,430	+		GFF5126	0.80	+1.7
5,118,438	-		GFF5126	0.81	+1.2
5,118,488	+		GFF5126	0.85	-0.0
5,118,495	+		GFF5126	0.85	-2.6
5,118,496	-		GFF5126	0.85	+1.0
5,118,496	-		GFF5126	0.85	-0.0
5,118,512	+		GFF5126	0.87	+0.6
5,118,522	+		GFF5126	0.88	-0.6
5,118,522	+		GFF5126	0.88	-1.2
5,118,522	+		GFF5126	0.88	-0.6
5,118,530	-		GFF5126	0.88	+0.9
5,118,530	-		GFF5126	0.88	+1.0
5,118,560	+				-1.2
5,118,565	+				-0.3
5,118,565	+				+0.2
5,118,565	+				+0.7
5,118,565	+				+0.6
5,118,565	+				-0.5
5,118,573	-				+0.9
5,118,573	-				-0.4
5,118,573	-				+0.1
5,118,573	-				-1.7
5,118,575	+				-1.2
5,118,575	+				-0.6
5,118,575	+				-1.9
5,118,583	-				+0.4
5,118,584	+				+1.6
5,118,592	-				-1.7
5,118,592	-				-1.9
5,118,592	-				+0.5
5,118,592	-				+1.5
5,118,592	-				+0.4
5,118,605	+				+0.4
5,118,605	+				-0.4
5,118,605	+				+0.1
5,118,605	+				+0.5
5,118,605	+				-0.8
5,118,605	+				-1.6
5,118,605	+				+1.2
5,118,610	+				-0.2
5,118,610	+				-2.2
5,118,610	+				-0.1
5,118,613	-				+0.6
5,118,613	-				-0.2
5,118,613	-				+0.8
5,118,613	-				+0.2
5,118,613	-				-0.1
5,118,613	-				+0.4
5,118,613	-				-0.7
5,118,613	-				-1.9
5,118,618	-				-0.6
5,118,620	+				-0.6
5,118,628	-				+0.7
5,118,655	+				-1.3
5,118,658	+				-0.9
5,118,662	+				-2.2
5,118,662	+				-0.1
5,118,662	+				-0.1
5,118,670	-				-0.6
5,118,670	-				-0.7
5,118,670	-				-0.3
5,118,670	-				-1.5
5,118,670	-				+0.7
5,118,673	+				-0.1
5,118,679	+				+1.0
5,118,683	+				+1.4
5,118,694	+				+0.7
5,118,714	+				+0.1
5,118,733	+		GFF5127	0.12	+0.9
5,118,741	+		GFF5127	0.14	-1.0
5,118,741	+		GFF5127	0.14	+0.6
5,118,743	+		GFF5127	0.15	-0.0
5,118,743	+		GFF5127	0.15	-0.3
5,118,743	+		GFF5127	0.15	-1.6
5,118,743	+		GFF5127	0.15	+0.4
5,118,751	-		GFF5127	0.17	-1.0
5,118,751	-		GFF5127	0.17	-0.4
5,118,751	-		GFF5127	0.17	+0.7
5,118,751	-		GFF5127	0.17	-1.0
5,118,751	-		GFF5127	0.17	+0.6
5,118,756	-		GFF5127	0.18	-0.2
5,118,757	+		GFF5127	0.18	-1.9
5,118,758	+		GFF5127	0.18	-0.6
5,118,765	-		GFF5127	0.20	+0.9
5,118,765	-		GFF5127	0.20	-0.4
5,118,765	-		GFF5127	0.20	-0.8
5,118,810	+		GFF5127	0.30	+0.8
5,118,810	-		GFF5127	0.30	+0.4
5,118,810	-		GFF5127	0.30	-1.6
5,118,814	+		GFF5127	0.31	-0.7
5,118,818	-		GFF5127	0.32	-0.6
5,118,818	-		GFF5127	0.32	-0.2
5,118,818	-		GFF5127	0.32	+0.3
5,118,818	-		GFF5127	0.32	+0.8
5,118,818	-		GFF5127	0.32	-0.0
5,118,836	-		GFF5127	0.36	+0.2
5,118,836	-		GFF5127	0.36	+1.0
5,118,853	+		GFF5127	0.40	+0.3
5,118,853	+		GFF5127	0.40	-1.9
5,118,853	+		GFF5127	0.40	+0.3
5,118,853	+		GFF5127	0.40	+0.0
5,118,853	+		GFF5127	0.40	+0.0
5,118,853	-		GFF5127	0.40	+0.6
5,118,874	+		GFF5127	0.45	+0.3
5,118,881	+		GFF5127	0.47	-0.3
5,118,882	-		GFF5127	0.47	-0.9
5,118,893	+		GFF5127	0.50	-2.1
5,118,901	-		GFF5127	0.52	+0.8
5,118,908	+		GFF5127	0.53	+0.0
5,118,908	+		GFF5127	0.53	+0.6
5,118,916	+		GFF5127	0.55	-0.5
5,118,916	-		GFF5127	0.55	+0.9
5,118,916	-		GFF5127	0.55	+1.1
5,118,919	-		GFF5127	0.56	+1.1
5,118,938	-		GFF5127	0.60	+0.3
5,118,992	+		GFF5127	0.73	-1.0
5,118,992	+		GFF5127	0.73	-0.6
5,118,992	+		GFF5127	0.73	-2.0
5,119,013	+		GFF5127	0.78	-0.4
5,119,013	+		GFF5127	0.78	+0.1
5,119,021	-		GFF5127	0.79	-0.0
5,119,021	-		GFF5127	0.79	-0.3
5,119,021	-		GFF5127	0.79	-1.9
5,119,049	-		GFF5127	0.86	+0.7
5,119,058	+		GFF5127	0.88	+0.7
5,119,077	-				-0.2
5,119,080	+				-0.1
5,119,081	-				-0.2
5,119,088	-				-0.5
5,119,093	+				+0.3
5,119,103	+				+1.3
5,119,119	-				-0.1
5,119,128	+				+0.7
5,119,134	+				+1.0
5,119,146	+				-0.1
5,119,218	+				+0.8
5,119,231	-				-1.7
5,119,275	+				+0.4
5,119,300	+				+1.8
5,119,305	+				+0.4
5,119,305	+				-1.8
5,119,305	+				-1.2
5,119,305	+				-1.9
5,119,306	-				-0.3
5,119,313	-				+1.2
5,119,313	-				-0.2
5,119,328	+				+0.8
5,119,328	+				-0.0
5,119,328	+				-0.2
5,119,328	+				-1.9
5,119,328	+				+1.2
5,119,336	-				+0.9
5,119,336	-				+0.5
5,119,336	-				-0.5
5,119,336	-				-0.7
5,119,336	-				-0.2
5,119,336	-				-0.3
5,119,336	-				-0.6
5,119,336	-				-1.0
5,119,336	-				+0.5
5,119,336	-				-0.6
5,119,336	-				+0.5
5,119,352	+				-0.1
5,119,360	+				+0.0
5,119,407	+		GFF5128	0.12	-0.9
5,119,415	-		GFF5128	0.13	-1.6
5,119,515	-		GFF5128	0.23	+0.8
5,119,516	+		GFF5128	0.23	+1.6
5,119,538	+		GFF5128	0.25	-0.7
5,119,538	+		GFF5128	0.25	-1.9
5,119,543	+		GFF5128	0.26	-0.2
5,119,543	+		GFF5128	0.26	-1.0
5,119,543	+		GFF5128	0.26	-1.1
5,119,544	+		GFF5128	0.26	+0.8
5,119,546	-		GFF5128	0.26	-2.2
5,119,551	-		GFF5128	0.27	+0.3
5,119,551	-		GFF5128	0.27	-1.6
5,119,551	-		GFF5128	0.27	+0.1
5,119,551	-		GFF5128	0.27	+0.4
5,119,551	-		GFF5128	0.27	-0.0
5,119,551	-		GFF5128	0.27	-0.2
5,119,561	+		GFF5128	0.28	+1.4
5,119,561	+		GFF5128	0.28	-0.4
5,119,561	+		GFF5128	0.28	+0.3
5,119,561	+		GFF5128	0.28	-0.2
5,119,561	+		GFF5128	0.28	-0.2
5,119,566	+		GFF5128	0.28	-0.5
5,119,569	-		GFF5128	0.29	-2.6
5,119,569	-		GFF5128	0.29	-2.2
5,119,569	-		GFF5128	0.29	-1.2
5,119,569	-		GFF5128	0.29	+0.7
5,119,571	-		GFF5128	0.29	-0.6
5,119,574	-		GFF5128	0.29	+1.1
5,119,574	-		GFF5128	0.29	-0.6
5,119,574	-		GFF5128	0.29	-0.2
5,119,579	-		GFF5128	0.30	-1.2
5,119,591	-		GFF5128	0.31	-2.0
5,119,598	+		GFF5128	0.32	-0.6
5,119,620	-		GFF5128	0.34	-0.1
5,119,626	+		GFF5128	0.35	+0.6
5,119,630	-		GFF5128	0.35	-0.6
5,119,634	-		GFF5128	0.35	-0.2
5,119,636	+		GFF5128	0.36	-0.6
5,119,679	+		GFF5128	0.40	-0.3
5,119,679	+		GFF5128	0.40	-0.1
5,119,733	+		GFF5128	0.46	-0.5
5,119,733	+		GFF5128	0.46	+0.3
5,119,733	+		GFF5128	0.46	+0.4
5,119,741	-		GFF5128	0.46	-0.2
5,119,741	-		GFF5128	0.46	-0.3
5,119,741	-		GFF5128	0.46	+1.1
5,119,741	-		GFF5128	0.46	-1.2
5,119,748	+		GFF5128	0.47	+0.6
5,119,758	+		GFF5128	0.48	+0.6
5,119,815	+		GFF5128	0.54	+0.1
5,119,825	-		GFF5128	0.55	+0.0
5,119,825	-		GFF5128	0.55	-0.4
5,119,881	-		GFF5128	0.61	+0.2
5,119,881	-		GFF5128	0.61	+0.2
5,119,883	-		GFF5128	0.61	-0.8
5,119,883	-		GFF5128	0.61	-2.3
5,119,897	+		GFF5128	0.63	-0.4
5,119,904	+		GFF5128	0.63	+0.3
5,119,905	-		GFF5128	0.63	-1.6
5,119,912	-		GFF5128	0.64	-0.6
5,119,918	+		GFF5128	0.65	+1.0
5,119,918	+		GFF5128	0.65	-1.8
5,119,920	+		GFF5128	0.65	-0.7
5,119,926	-		GFF5128	0.66	-0.7
5,119,928	+		GFF5128	0.66	+0.1
5,119,928	-		GFF5128	0.66	+0.1
5,119,974	+		GFF5128	0.70	-0.4
5,119,974	-		GFF5128	0.70	-3.0
5,119,975	+		GFF5128	0.71	-0.6
5,119,975	+		GFF5128	0.71	+0.3
5,119,983	-		GFF5128	0.71	+0.5
5,119,983	-		GFF5128	0.71	+0.7
5,119,983	-		GFF5128	0.71	+0.3
5,119,983	-		GFF5128	0.71	-0.4
5,119,983	-		GFF5128	0.71	-0.1
5,119,985	-		GFF5128	0.72	+1.8
5,119,993	+		GFF5128	0.72	+0.2
5,119,993	+		GFF5128	0.72	-1.9
5,120,001	-		GFF5128	0.73	-1.9
5,120,001	-		GFF5128	0.73	+0.4
5,120,001	-		GFF5128	0.73	-0.6
5,120,024	+		GFF5128	0.76	+1.6
5,120,069	+		GFF5128	0.80	-2.0
5,120,069	+		GFF5128	0.80	-2.1
5,120,069	+		GFF5128	0.80	-1.6
5,120,069	+		GFF5128	0.80	+0.5
5,120,069	+		GFF5128	0.80	+0.4
5,120,069	+		GFF5128	0.80	-2.0
5,120,077	-		GFF5128	0.81	-0.2
5,120,077	-		GFF5128	0.81	+0.4
5,120,077	-		GFF5128	0.81	-1.0
5,120,077	-		GFF5128	0.81	-0.6
5,120,077	-		GFF5128	0.81	+1.1
5,120,082	-		GFF5128	0.82	+0.6
5,120,092	-		GFF5128	0.83	+0.4
5,120,092	-		GFF5128	0.83	-0.8
5,120,092	-		GFF5128	0.83	+0.4
5,120,096	+		GFF5128	0.83	-0.0
5,120,146	+		GFF5128	0.88	+0.3
5,120,146	+		GFF5128	0.88	+1.5
5,120,146	+		GFF5128	0.88	-1.5
5,120,146	+		GFF5128	0.88	+1.0
5,120,146	+		GFF5128	0.88	+1.3
5,120,146	+		GFF5128	0.88	-0.3
5,120,146	+		GFF5128	0.88	-1.6
5,120,146	+		GFF5128	0.88	-0.3
5,120,148	-		GFF5128	0.88	+0.3
5,120,154	-		GFF5128	0.89	-0.4
5,120,154	-		GFF5128	0.89	-1.2
5,120,154	-		GFF5128	0.89	-0.4
5,120,154	-		GFF5128	0.89	+1.0
5,120,193	+				+0.4
5,120,198	+				-0.4
5,120,198	+				-0.2
5,120,198	+				+0.8
5,120,198	+				-0.6
5,120,200	+				-1.5
5,120,201	-				-0.6
5,120,206	-				+1.2
5,120,206	-				+0.7
5,120,207	+				+0.3
5,120,208	-				-1.3
5,120,208	-				+0.3
5,120,233	+				+0.1
5,120,235	-				+0.4
5,120,248	+				-1.0
5,120,250	+				-1.3
5,120,273	+				-0.2
5,120,273	+				+1.1
5,120,278	+				-2.0
5,120,281	-				-0.8
5,120,285	+				+0.7
5,120,302	+				+0.5
5,120,302	+				-1.0
5,120,319	+				-1.3
5,120,319	+				-1.7
5,120,328	-				-1.2
5,120,330	+				+0.5
5,120,338	-				+0.3
5,120,348	+				-0.5
5,120,356	-				+1.0
5,120,386	+				-0.2
5,120,386	+				+0.5
5,120,394	-				+0.6
5,120,399	-				-0.6
5,120,401	+				-0.4
5,120,408	-				-0.2
5,120,409	-				-1.0
5,120,423	-				-1.1
5,120,427	-				-0.0
5,120,477	+				-0.2
5,120,485	-				-0.6
5,120,491	-				+1.5
5,120,499	-				+0.4
5,120,499	-				+0.2
5,120,501	+				-0.3
5,120,501	+				-0.5
5,120,501	+				+0.0
5,120,501	+				-0.7
5,120,501	+				+0.2
5,120,501	+				+0.3
5,120,501	+				-1.1
5,120,508	+				+2.0
5,120,509	-		GFF5129	0.10	+2.0
5,120,509	-		GFF5129	0.10	-2.2
5,120,509	-		GFF5129	0.10	-2.0
5,120,509	-		GFF5129	0.10	-0.7
5,120,509	-		GFF5129	0.10	-1.1
5,120,510	-		GFF5129	0.10	-0.2
5,120,510	-		GFF5129	0.10	-0.3
5,120,510	-		GFF5129	0.10	-0.6
5,120,511	-		GFF5129	0.10	+0.1
5,120,521	-		GFF5129	0.11	+0.4
5,120,552	+		GFF5129	0.12	+1.5
5,120,552	+		GFF5129	0.12	+0.7
5,120,552	+		GFF5129	0.12	+0.4
5,120,554	-		GFF5129	0.12	-0.7
5,120,560	-		GFF5129	0.12	-0.4
5,120,562	+		GFF5129	0.12	-2.3
5,120,562	+		GFF5129	0.12	+0.1
5,120,565	-		GFF5129	0.12	-1.6
5,120,626	-		GFF5129	0.15	+0.2
5,120,634	-		GFF5129	0.15	-1.0
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5,120,716	+		GFF5129	0.18	+0.3
5,120,719	-		GFF5129	0.18	+0.7
5,120,731	+		GFF5129	0.19	-2.2
5,120,731	+		GFF5129	0.19	-0.8
5,120,734	+		GFF5129	0.19	+0.0
5,120,739	+		GFF5129	0.19	-0.2
5,120,739	-		GFF5129	0.19	-0.0
5,120,742	-		GFF5129	0.19	-0.2
5,120,742	-		GFF5129	0.19	-0.6
5,120,757	+		GFF5129	0.20	-1.0
5,120,776	+		GFF5129	0.21	-1.2
5,120,776	+		GFF5129	0.21	+0.5
5,120,783	-		GFF5129	0.21	-0.0
5,120,784	-		GFF5129	0.21	-1.3
5,120,839	+		GFF5129	0.23	+0.9
5,120,842	-		GFF5129	0.23	-1.0
5,120,861	+		GFF5129	0.24	+0.4
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5,120,869	-		GFF5129	0.24	+1.1
5,120,876	+		GFF5129	0.25	-0.1
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5,120,887	+		GFF5129	0.25	-1.5
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5,120,897	+		GFF5129	0.25	-0.3
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5,120,924	-		GFF5129	0.26	-0.7
5,121,027	+		GFF5129	0.31	-0.6
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5,121,032	+		GFF5129	0.31	-2.3
5,121,040	-		GFF5129	0.31	-2.7
5,121,040	-		GFF5129	0.31	-1.6
5,121,057	+		GFF5129	0.32	+0.6
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5,121,251	+		GFF5129	0.39	+0.0
5,121,251	+		GFF5129	0.39	+0.5