Strain Fitness in Sphingobium sp. HT1-2 around GFF5125

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,116,156	+		GFF5123	0.68	+0.8
5,116,156	+		GFF5123	0.68	+0.1
5,116,156	+		GFF5123	0.68	-0.7
5,116,156	+		GFF5123	0.68	-0.6
5,116,156	+		GFF5123	0.68	-1.6
5,116,156	+		GFF5123	0.68	+0.0
5,116,156	+		GFF5123	0.68	-0.5
5,116,156	+		GFF5123	0.68	+0.4
5,116,156	+		GFF5123	0.68	+0.0
5,116,156	+		GFF5123	0.68	+0.4
5,116,164	-		GFF5123	0.69	-0.1
5,116,164	-		GFF5123	0.69	-0.4
5,116,164	-		GFF5123	0.69	+1.0
5,116,164	-		GFF5123	0.69	+1.6
5,116,164	-		GFF5123	0.69	-1.3
5,116,164	-		GFF5123	0.69	-0.1
5,116,164	-		GFF5123	0.69	+0.4
5,116,164	-		GFF5123	0.69	+1.3
5,116,164	-		GFF5123	0.69	-1.1
5,116,164	-		GFF5123	0.69	+0.2
5,116,164	-		GFF5123	0.69	-0.4
5,116,164	-		GFF5123	0.69	+0.3
5,116,176	-		GFF5123	0.69	-0.5
5,116,180	-		GFF5123	0.69	-0.2
5,116,189	+		GFF5123	0.70	-0.1
5,116,195	+		GFF5123	0.70	-1.4
5,116,195	+		GFF5123	0.70	+0.2
5,116,195	+		GFF5123	0.70	+0.9
5,116,195	+		GFF5123	0.70	-0.5
5,116,197	-		GFF5123	0.70	+0.1
5,116,197	-		GFF5123	0.70	-1.3
5,116,197	-		GFF5123	0.70	+0.6
5,116,203	-		GFF5123	0.70	-1.4
5,116,203	-		GFF5123	0.70	+0.2
5,116,227	+		GFF5123	0.72	-1.2
5,116,237	+		GFF5123	0.72	+0.5
5,116,245	-		GFF5123	0.72	-0.6
5,116,247	-		GFF5123	0.72	-1.0
5,116,250	+		GFF5123	0.73	+0.3
5,116,250	+		GFF5123	0.73	+0.5
5,116,250	+		GFF5123	0.73	+1.1
5,116,250	+		GFF5123	0.73	-0.3
5,116,250	+		GFF5123	0.73	-0.4
5,116,250	+		GFF5123	0.73	+0.1
5,116,258	-		GFF5123	0.73	-2.0
5,116,258	-		GFF5123	0.73	+1.1
5,116,258	-		GFF5123	0.73	+0.4
5,116,258	-		GFF5123	0.73	-0.0
5,116,302	-		GFF5123	0.75	-1.8
5,116,311	+		GFF5123	0.75	-3.1
5,116,311	+		GFF5123	0.75	+0.2
5,116,321	+		GFF5123	0.76	+1.1
5,116,365	+		GFF5123	0.78	-0.3
5,116,375	+		GFF5123	0.78	+0.4
5,116,383	-		GFF5123	0.79	-0.7
5,116,386	-		GFF5123	0.79	+0.2
5,116,399	+		GFF5123	0.79	-0.2
5,116,399	+		GFF5123	0.79	-1.3
5,116,404	+		GFF5123	0.79	-1.3
5,116,409	+		GFF5123	0.80	-0.1
5,116,414	+		GFF5123	0.80	+1.1
5,116,414	+		GFF5123	0.80	-0.9
5,116,414	+		GFF5123	0.80	+0.5
5,116,414	+		GFF5123	0.80	+0.5
5,116,414	+		GFF5123	0.80	-0.2
5,116,414	+		GFF5123	0.80	-0.4
5,116,414	+		GFF5123	0.80	+0.1
5,116,414	+		GFF5123	0.80	-0.0
5,116,414	+		GFF5123	0.80	-1.6
5,116,414	+		GFF5123	0.80	-0.3
5,116,414	+		GFF5123	0.80	+0.6
5,116,422	-		GFF5123	0.80	-2.4
5,116,422	-		GFF5123	0.80	+1.0
5,116,422	-		GFF5123	0.80	-0.4
5,116,422	-		GFF5123	0.80	-1.2
5,116,422	-		GFF5123	0.80	+0.8
5,116,422	-		GFF5123	0.80	+0.8
5,116,422	-		GFF5123	0.80	+0.8
5,116,424	+		GFF5123	0.80	-2.0
5,116,424	+		GFF5123	0.80	-1.2
5,116,424	+		GFF5123	0.80	+0.3
5,116,424	+		GFF5123	0.80	+1.3
5,116,424	+		GFF5123	0.80	-0.2
5,116,424	+		GFF5123	0.80	-1.3
5,116,424	+		GFF5123	0.80	-0.2
5,116,424	+		GFF5123	0.80	+0.7
5,116,424	+		GFF5123	0.80	-1.7
5,116,432	-		GFF5123	0.81	-0.1
5,116,432	-		GFF5123	0.81	+1.4
5,116,432	-		GFF5123	0.81	-0.7
5,116,432	-		GFF5123	0.81	-1.3
5,116,432	-		GFF5123	0.81	+1.1
5,116,432	-		GFF5123	0.81	-0.9
5,116,432	-		GFF5123	0.81	-0.7
5,116,432	-		GFF5123	0.81	-2.5
5,116,432	-		GFF5123	0.81	-0.5
5,116,432	-		GFF5123	0.81	+0.1
5,116,432	-		GFF5123	0.81	-0.4
5,116,432	-		GFF5123	0.81	-1.2
5,116,453	+		GFF5123	0.82	+0.5
5,116,517	+		GFF5123	0.84	+0.4
5,116,523	+		GFF5123	0.85	-1.5
5,116,525	-		GFF5123	0.85	+0.5
5,116,543	-		GFF5123	0.86	+1.6
5,116,558	+		GFF5123	0.86	-2.7
5,116,558	+		GFF5123	0.86	-0.5
5,116,558	+		GFF5123	0.86	-2.7
5,116,568	+		GFF5123	0.87	-0.4
5,116,568	+		GFF5123	0.87	+0.1
5,116,568	+		GFF5123	0.87	+0.5
5,116,568	+		GFF5123	0.87	+0.8
5,116,568	+		GFF5123	0.87	-0.3
5,116,568	+		GFF5123	0.87	-0.6
5,116,574	+		GFF5123	0.87	-1.2
5,116,575	-		GFF5123	0.87	-1.8
5,116,576	-		GFF5123	0.87	-0.5
5,116,576	-		GFF5123	0.87	-0.0
5,116,576	-		GFF5123	0.87	-1.9
5,116,576	-		GFF5123	0.87	-2.1
5,116,576	-		GFF5123	0.87	+1.0
5,116,576	-		GFF5123	0.87	+0.3
5,116,578	+		GFF5123	0.87	-0.1
5,116,578	+		GFF5123	0.87	+0.0
5,116,586	-		GFF5123	0.88	-0.4
5,116,596	-		GFF5123	0.88	-0.4
5,116,629	+		GFF5123	0.89	-2.1
5,116,629	+		GFF5123	0.89	-1.2
5,116,637	-		GFF5123	0.90	+1.3
5,116,637	-		GFF5123	0.90	-0.8
5,116,637	-		GFF5123	0.90	-0.1
5,116,637	-		GFF5123	0.90	+0.4
5,116,642	+				-0.8
5,116,647	-				+0.5
5,116,661	+				+0.5
5,116,666	+				-0.0
5,116,666	+				-2.3
5,116,669	-				-3.1
5,116,669	-				+0.0
5,116,674	-				+0.3
5,116,674	-				+0.7
5,116,674	-				+0.2
5,116,674	-				-1.2
5,116,698	+				-1.2
5,116,703	+				+0.0
5,116,706	-				+0.6
5,116,746	+				+0.5
5,116,759	-				-0.4
5,116,759	-				+0.1
5,116,760	-				+0.4
5,116,775	+				-1.0
5,116,801	+				-0.6
5,116,804	-				-0.5
5,116,804	-				+0.0
5,116,809	-				+0.8
5,116,814	-				+1.6
5,116,814	-				+0.6
5,116,818	-				+0.0
5,116,861	+				+0.8
5,116,902	-		GFF5124	0.23	-0.2
5,116,903	+		GFF5124	0.24	+0.5
5,116,909	+		GFF5124	0.28	-0.6
5,116,911	-		GFF5124	0.30	-1.1
5,116,933	-		GFF5124	0.45	+1.3
5,117,015	+				-1.1
5,117,021	+				+0.8
5,117,040	-				-0.7
5,117,051	+				+0.5
5,117,051	+				-0.1
5,117,051	+				-1.6
5,117,051	+				-0.1
5,117,059	-				-0.9
5,117,059	-				-0.2
5,117,059	-				-2.0
5,117,059	-				-0.6
5,117,070	+				-0.2
5,117,075	-				-0.4
5,117,168	-		GFF5125	0.16	+0.5
5,117,169	+		GFF5125	0.16	+0.2
5,117,177	-		GFF5125	0.20	-0.8
5,117,179	+		GFF5125	0.21	-1.5
5,117,182	-		GFF5125	0.22	+0.8
5,117,187	-		GFF5125	0.24	-0.4
5,117,187	-		GFF5125	0.24	-0.0
5,117,187	-		GFF5125	0.24	-1.2
5,117,187	-		GFF5125	0.24	+0.6
5,117,189	+		GFF5125	0.25	+0.5
5,117,189	+		GFF5125	0.25	-0.3
5,117,194	+		GFF5125	0.27	+0.1
5,117,197	-		GFF5125	0.29	+0.2
5,117,197	-		GFF5125	0.29	+0.2
5,117,197	-		GFF5125	0.29	+0.3
5,117,202	-		GFF5125	0.31	-0.6
5,117,208	-		GFF5125	0.33	-1.3
5,117,228	+		GFF5125	0.42	-0.8
5,117,228	+		GFF5125	0.42	-2.3
5,117,236	-		GFF5125	0.46	+0.0
5,117,238	+		GFF5125	0.46	-1.3
5,117,238	+		GFF5125	0.46	-0.3
5,117,238	+		GFF5125	0.46	+0.0
5,117,241	-		GFF5125	0.48	-0.5
5,117,243	+		GFF5125	0.49	+0.4
5,117,248	+		GFF5125	0.51	-0.4
5,117,248	+		GFF5125	0.51	-1.0
5,117,248	+		GFF5125	0.51	-0.0
5,117,248	+		GFF5125	0.51	+0.6
5,117,248	+		GFF5125	0.51	-1.0
5,117,248	+		GFF5125	0.51	-0.6
5,117,248	+		GFF5125	0.51	+0.7
5,117,248	+		GFF5125	0.51	+0.4
5,117,256	-		GFF5125	0.54	-0.2
5,117,256	-		GFF5125	0.54	+0.1
5,117,256	-		GFF5125	0.54	-0.3
5,117,256	-		GFF5125	0.54	+1.2
5,117,256	-		GFF5125	0.54	-0.2
5,117,256	-		GFF5125	0.54	+0.2
5,117,256	-		GFF5125	0.54	+0.0
5,117,261	+		GFF5125	0.57	-0.4
5,117,283	+		GFF5125	0.66	+0.8
5,117,284	-		GFF5125	0.67	+0.1
5,117,295	+		GFF5125	0.71	-1.1
5,117,325	-		GFF5125	0.85	-0.6
5,117,331	-		GFF5125	0.87	-1.3
5,117,381	+				+0.3
5,117,382	-				+0.2
5,117,397	+				-0.4
5,117,397	+				+0.4
5,117,397	+				-1.0
5,117,397	+				-2.0
5,117,397	+				-1.6
5,117,402	+				+1.1
5,117,402	+				+1.5
5,117,405	-				-0.8
5,117,405	-				+0.5
5,117,405	-				-0.6
5,117,405	-				-1.9
5,117,410	-				+0.0
5,117,410	-				-2.6
5,117,419	+				-2.3
5,117,419	+				-0.4
5,117,419	+				+0.2
5,117,419	+				+0.8
5,117,419	+				+0.6
5,117,419	+				+1.4
5,117,419	+				-2.1
5,117,419	+				-0.7
5,117,419	+				-0.4
5,117,419	+				-1.2
5,117,419	+				-1.8
5,117,419	+				+0.3
5,117,427	-				+0.8
5,117,427	-				-0.9
5,117,427	-				+0.8
5,117,427	-				-1.9
5,117,427	-				+1.1
5,117,427	-				+0.8
5,117,427	-				+0.6
5,117,427	-				+0.2
5,117,429	+				+1.2
5,117,429	+				-0.8
5,117,429	+				+0.6
5,117,429	+				-0.1
5,117,429	+				-1.0
5,117,429	-				-1.5
5,117,437	-				-0.0
5,117,437	-				-1.3
5,117,437	-				+0.0
5,117,437	-				-0.0
5,117,437	-				+0.2
5,117,445	-				+1.0
5,117,462	+				-0.7
5,117,462	+				-0.9
5,117,462	+				+0.8
5,117,462	+				-2.3
5,117,469	+				-0.2
5,117,470	-				+1.1
5,117,470	-				+0.5
5,117,478	+				+0.1
5,117,486	-				-0.6
5,117,505	-				+0.1
5,117,505	-				-1.0
5,117,526	+		GFF5126	0.11	-0.2
5,117,526	+		GFF5126	0.11	+0.6
5,117,526	+		GFF5126	0.11	-0.6
5,117,526	+		GFF5126	0.11	-0.5
5,117,526	+		GFF5126	0.11	-0.8
5,117,534	-		GFF5126	0.11	+0.5
5,117,534	-		GFF5126	0.11	-0.3
5,117,534	-		GFF5126	0.11	+0.5
5,117,534	-		GFF5126	0.11	-1.0
5,117,534	-		GFF5126	0.11	+1.6
5,117,534	-		GFF5126	0.11	-0.5
5,117,534	-		GFF5126	0.11	+0.5
5,117,534	-		GFF5126	0.11	-0.9
5,117,534	-		GFF5126	0.11	-0.0
5,117,534	-		GFF5126	0.11	-1.9
5,117,551	+		GFF5126	0.13	+0.0
5,117,571	-		GFF5126	0.14	-2.1
5,117,576	+		GFF5126	0.15	-0.9
5,117,576	+		GFF5126	0.15	-0.3
5,117,584	-		GFF5126	0.15	-1.3
5,117,594	-		GFF5126	0.16	+0.0
5,117,599	-		GFF5126	0.16	-0.2
5,117,599	-		GFF5126	0.16	-0.9
5,117,599	-		GFF5126	0.16	-1.9
5,117,599	-		GFF5126	0.16	+0.6
5,117,599	-		GFF5126	0.16	-1.6
5,117,599	-		GFF5126	0.16	-0.2
5,117,599	-		GFF5126	0.16	+0.9
5,117,636	+		GFF5126	0.19	-0.7
5,117,636	+		GFF5126	0.19	-0.6
5,117,651	-		GFF5126	0.20	+0.6
5,117,656	-		GFF5126	0.21	-0.7
5,117,662	-		GFF5126	0.21	-1.0
5,117,674	-		GFF5126	0.22	-0.9
5,117,695	+		GFF5126	0.24	-1.7
5,117,705	+		GFF5126	0.24	+0.0
5,117,747	+		GFF5126	0.28	-2.6
5,117,747	+		GFF5126	0.28	-0.3
5,117,747	+		GFF5126	0.28	-1.7
5,117,747	+		GFF5126	0.28	-1.9
5,117,747	+		GFF5126	0.28	+0.1
5,117,747	+		GFF5126	0.28	-0.5
5,117,747	+		GFF5126	0.28	-1.3
5,117,755	-		GFF5126	0.28	+0.1
5,117,755	-		GFF5126	0.28	-0.9
5,117,755	-		GFF5126	0.28	-1.9
5,117,755	-		GFF5126	0.28	-0.6
5,117,755	-		GFF5126	0.28	+0.3
5,117,763	-		GFF5126	0.29	-0.8
5,117,765	+		GFF5126	0.29	+0.1
5,117,777	+		GFF5126	0.30	+1.4
5,117,779	+		GFF5126	0.30	+0.3
5,117,785	-		GFF5126	0.31	+0.8
5,117,787	+		GFF5126	0.31	-0.8
5,117,795	-		GFF5126	0.31	-0.2
5,117,796	-		GFF5126	0.31	-1.2
5,117,809	+		GFF5126	0.32	+0.2
5,117,851	+		GFF5126	0.36	+0.5
5,117,851	+		GFF5126	0.36	+0.1
5,117,854	-		GFF5126	0.36	+0.7
5,117,859	-		GFF5126	0.36	-1.1
5,117,860	-		GFF5126	0.36	-0.4
5,117,881	+		GFF5126	0.38	-2.7
5,117,881	+		GFF5126	0.38	-0.2
5,117,881	+		GFF5126	0.38	-0.5
5,117,881	+		GFF5126	0.38	-2.3
5,117,881	+		GFF5126	0.38	+0.6
5,117,881	+		GFF5126	0.38	+0.6
5,117,881	+		GFF5126	0.38	-1.1
5,117,884	-		GFF5126	0.38	+1.6
5,117,889	-		GFF5126	0.39	+0.8
5,117,889	-		GFF5126	0.39	+1.4
5,117,889	-		GFF5126	0.39	-0.2
5,117,889	-		GFF5126	0.39	+0.3
5,117,889	-		GFF5126	0.39	+0.0
5,117,909	+		GFF5126	0.40	+0.6
5,117,939	+		GFF5126	0.43	+0.4
5,117,946	+		GFF5126	0.43	-0.6
5,117,954	-		GFF5126	0.44	-0.3
5,117,966	+		GFF5126	0.45	-0.3
5,118,002	-		GFF5126	0.47	-0.6
5,118,020	-		GFF5126	0.49	-2.1
5,118,033	+		GFF5126	0.50	-0.5
5,118,033	-		GFF5126	0.50	-1.0
5,118,056	-		GFF5126	0.52	-2.2
5,118,064	-		GFF5126	0.52	-0.3
5,118,064	-		GFF5126	0.52	-0.1
5,118,064	-		GFF5126	0.52	+0.3
5,118,074	-		GFF5126	0.53	-0.2
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