Strain Fitness in Sphingobium sp. HT1-2 around GFF5008

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,001,188	-		GFF5007	0.35	+0.1
5,001,188	-		GFF5007	0.35	+0.2
5,001,203	+		GFF5007	0.36	+0.8
5,001,204	+		GFF5007	0.36	-0.5
5,001,204	+		GFF5007	0.36	-1.1
5,001,204	+		GFF5007	0.36	+1.0
5,001,204	+		GFF5007	0.36	+0.8
5,001,204	+		GFF5007	0.36	+0.5
5,001,212	-		GFF5007	0.36	-0.2
5,001,236	-		GFF5007	0.38	-1.2
5,001,251	+		GFF5007	0.39	-2.0
5,001,270	+		GFF5007	0.40	-0.0
5,001,271	+		GFF5007	0.40	-0.2
5,001,271	+		GFF5007	0.40	+0.0
5,001,278	-		GFF5007	0.41	-1.0
5,001,279	-		GFF5007	0.41	+1.3
5,001,279	-		GFF5007	0.41	+0.6
5,001,279	-		GFF5007	0.41	-2.2
5,001,282	+		GFF5007	0.41	+0.9
5,001,282	+		GFF5007	0.41	+0.4
5,001,287	+		GFF5007	0.41	-1.2
5,001,290	-		GFF5007	0.41	-2.0
5,001,290	-		GFF5007	0.41	-0.1
5,001,290	-		GFF5007	0.41	-1.6
5,001,290	-		GFF5007	0.41	-0.6
5,001,300	+		GFF5007	0.42	-2.0
5,001,300	+		GFF5007	0.42	-0.2
5,001,308	-		GFF5007	0.43	+1.0
5,001,332	+		GFF5007	0.44	+0.2
5,001,332	+		GFF5007	0.44	-0.3
5,001,332	+		GFF5007	0.44	+1.4
5,001,332	+		GFF5007	0.44	+1.5
5,001,340	-		GFF5007	0.45	-0.0
5,001,340	-		GFF5007	0.45	-1.0
5,001,340	-		GFF5007	0.45	-0.8
5,001,340	-		GFF5007	0.45	+1.0
5,001,340	-		GFF5007	0.45	+0.4
5,001,342	+		GFF5007	0.45	+0.0
5,001,342	+		GFF5007	0.45	+1.0
5,001,342	+		GFF5007	0.45	+1.7
5,001,349	+		GFF5007	0.45	+0.3
5,001,349	-		GFF5007	0.45	+1.0
5,001,350	-		GFF5007	0.45	-1.9
5,001,350	-		GFF5007	0.45	-1.1
5,001,356	+		GFF5007	0.46	+0.3
5,001,356	+		GFF5007	0.46	-0.8
5,001,356	+		GFF5007	0.46	-0.3
5,001,364	-		GFF5007	0.46	-0.3
5,001,364	-		GFF5007	0.46	+1.1
5,001,372	-		GFF5007	0.47	+0.9
5,001,382	+		GFF5007	0.47	-0.6
5,001,388	-		GFF5007	0.48	+0.3
5,001,388	-		GFF5007	0.48	+0.3
5,001,414	+		GFF5007	0.49	+0.3
5,001,424	+		GFF5007	0.50	-0.8
5,001,428	+		GFF5007	0.50	+1.3
5,001,448	+		GFF5007	0.52	+0.4
5,001,458	+		GFF5007	0.52	+1.4
5,001,458	+		GFF5007	0.52	-1.8
5,001,458	-		GFF5007	0.52	+0.1
5,001,459	+		GFF5007	0.52	-1.5
5,001,485	+		GFF5007	0.54	-0.1
5,001,485	+		GFF5007	0.54	+0.2
5,001,485	+		GFF5007	0.54	+1.0
5,001,485	+		GFF5007	0.54	+1.7
5,001,485	+		GFF5007	0.54	-1.2
5,001,488	-		GFF5007	0.54	+0.9
5,001,490	+		GFF5007	0.54	-1.6
5,001,493	-		GFF5007	0.55	-0.5
5,001,493	-		GFF5007	0.55	+0.8
5,001,503	+		GFF5007	0.55	+1.0
5,001,503	+		GFF5007	0.55	+0.4
5,001,503	+		GFF5007	0.55	+1.6
5,001,503	+		GFF5007	0.55	-0.6
5,001,503	+		GFF5007	0.55	-1.2
5,001,503	+		GFF5007	0.55	+0.9
5,001,503	+		GFF5007	0.55	+1.4
5,001,503	+		GFF5007	0.55	-0.2
5,001,508	+		GFF5007	0.56	+0.8
5,001,511	-		GFF5007	0.56	+0.0
5,001,511	-		GFF5007	0.56	+2.1
5,001,511	-		GFF5007	0.56	+0.8
5,001,511	-		GFF5007	0.56	+0.4
5,001,511	-		GFF5007	0.56	+0.5
5,001,511	-		GFF5007	0.56	-0.3
5,001,511	-		GFF5007	0.56	-0.7
5,001,511	-		GFF5007	0.56	-0.6
5,001,511	-		GFF5007	0.56	+1.1
5,001,511	-		GFF5007	0.56	-0.3
5,001,521	-		GFF5007	0.56	+0.1
5,001,541	-		GFF5007	0.58	-1.0
5,001,541	-		GFF5007	0.58	+0.5
5,001,541	-		GFF5007	0.58	-0.1
5,001,580	-		GFF5007	0.60	+0.7
5,001,580	-		GFF5007	0.60	-1.8
5,001,582	+		GFF5007	0.60	+1.4
5,001,595	-		GFF5007	0.61	-1.1
5,001,604	+		GFF5007	0.62	-0.5
5,001,612	-		GFF5007	0.62	-1.8
5,001,621	+		GFF5007	0.63	-0.6
5,001,621	+		GFF5007	0.63	+1.6
5,001,629	-		GFF5007	0.63	-1.2
5,001,629	-		GFF5007	0.63	+0.3
5,001,629	-		GFF5007	0.63	+0.2
5,001,629	-		GFF5007	0.63	+0.3
5,001,629	-		GFF5007	0.63	+0.5
5,001,631	+		GFF5007	0.64	+0.6
5,001,631	+		GFF5007	0.64	-0.0
5,001,638	+		GFF5007	0.64	-0.7
5,001,638	-		GFF5007	0.64	-0.1
5,001,639	-		GFF5007	0.64	+1.0
5,001,639	-		GFF5007	0.64	+0.9
5,001,645	-		GFF5007	0.64	-1.5
5,001,646	-		GFF5007	0.65	+1.1
5,001,646	-		GFF5007	0.65	-0.9
5,001,646	-		GFF5007	0.65	+0.9
5,001,646	-		GFF5007	0.65	-1.3
5,001,652	-		GFF5007	0.65	-0.4
5,001,682	-		GFF5007	0.67	+0.5
5,001,682	-		GFF5007	0.67	+0.4
5,001,701	+		GFF5007	0.68	+0.1
5,001,720	+		GFF5007	0.69	+0.1
5,001,720	+		GFF5007	0.69	+0.1
5,001,720	+		GFF5007	0.69	+1.2
5,001,725	+		GFF5007	0.70	+1.0
5,001,773	-		GFF5007	0.73	-0.1
5,001,786	+		GFF5007	0.74	+0.9
5,001,794	-		GFF5007	0.74	+1.7
5,001,794	-		GFF5007	0.74	-0.6
5,001,798	+		GFF5007	0.74	-0.2
5,001,798	+		GFF5007	0.74	+0.7
5,001,798	+		GFF5007	0.74	+0.4
5,001,798	+		GFF5007	0.74	+1.7
5,001,801	-		GFF5007	0.75	-0.3
5,001,804	-		GFF5007	0.75	+1.4
5,001,806	-		GFF5007	0.75	+1.2
5,001,806	-		GFF5007	0.75	+0.7
5,001,806	-		GFF5007	0.75	-1.3
5,001,806	-		GFF5007	0.75	+0.8
5,001,817	+		GFF5007	0.76	-0.4
5,001,817	+		GFF5007	0.76	-0.5
5,001,832	+		GFF5007	0.77	-0.7
5,001,832	+		GFF5007	0.77	-3.2
5,001,832	+		GFF5007	0.77	+0.3
5,001,832	+		GFF5007	0.77	+0.5
5,001,832	+		GFF5007	0.77	+0.4
5,001,832	+		GFF5007	0.77	-0.1
5,001,832	+		GFF5007	0.77	+0.1
5,001,832	+		GFF5007	0.77	-0.6
5,001,832	+		GFF5007	0.77	-0.4
5,001,832	+		GFF5007	0.77	+0.5
5,001,832	+		GFF5007	0.77	-2.0
5,001,832	+		GFF5007	0.77	-1.8
5,001,834	+		GFF5007	0.77	+0.3
5,001,834	+		GFF5007	0.77	+0.0
5,001,834	-		GFF5007	0.77	-0.3
5,001,840	-		GFF5007	0.77	+0.7
5,001,840	-		GFF5007	0.77	+0.5
5,001,840	-		GFF5007	0.77	+1.0
5,001,840	-		GFF5007	0.77	-0.6
5,001,840	-		GFF5007	0.77	+1.1
5,001,840	-		GFF5007	0.77	-0.8
5,001,840	-		GFF5007	0.77	+0.3
5,001,840	-		GFF5007	0.77	-0.6
5,001,840	-		GFF5007	0.77	+1.0
5,001,840	-		GFF5007	0.77	+0.7
5,001,841	-		GFF5007	0.77	+1.2
5,001,842	-		GFF5007	0.77	-1.3
5,001,849	+		GFF5007	0.78	+0.5
5,001,857	-		GFF5007	0.78	-2.5
5,001,890	-		GFF5007	0.80	-0.0
5,001,890	-		GFF5007	0.80	+0.7
5,001,901	+		GFF5007	0.81	-0.4
5,001,901	+		GFF5007	0.81	+0.5
5,001,901	+		GFF5007	0.81	-0.3
5,001,901	+		GFF5007	0.81	-0.6
5,001,901	+		GFF5007	0.81	+0.1
5,001,901	+		GFF5007	0.81	+1.5
5,001,906	+		GFF5007	0.81	-0.8
5,001,909	-		GFF5007	0.82	+1.4
5,001,909	-		GFF5007	0.82	-0.5
5,001,909	-		GFF5007	0.82	-2.0
5,001,909	-		GFF5007	0.82	+0.0
5,001,926	-		GFF5007	0.83	+0.7
5,001,945	+		GFF5007	0.84	+0.4
5,001,945	+		GFF5007	0.84	+0.4
5,001,945	+		GFF5007	0.84	+0.4
5,001,945	+		GFF5007	0.84	+0.3
5,001,945	+		GFF5007	0.84	-1.4
5,001,945	+		GFF5007	0.84	-1.3
5,001,945	+		GFF5007	0.84	-0.6
5,001,953	-		GFF5007	0.84	-0.6
5,001,953	-		GFF5007	0.84	+0.4
5,001,953	-		GFF5007	0.84	-0.6
5,001,953	-		GFF5007	0.84	+1.2
5,001,953	-		GFF5007	0.84	+0.5
5,001,953	-		GFF5007	0.84	+0.3
5,001,960	+		GFF5007	0.85	+0.1
5,001,966	-		GFF5007	0.85	+0.5
5,001,970	+		GFF5007	0.86	-0.1
5,001,972	+		GFF5007	0.86	+0.8
5,001,978	-		GFF5007	0.86	+1.2
5,001,988	-		GFF5007	0.87	+1.2
5,001,988	-		GFF5007	0.87	+1.1
5,001,988	-		GFF5007	0.87	+1.8
5,001,988	-		GFF5007	0.87	+0.7
5,002,012	+		GFF5007	0.88	+1.1
5,002,014	+		GFF5007	0.88	+0.5
5,002,032	+		GFF5007	0.90	+0.0
5,002,032	+		GFF5007	0.90	+0.5
5,002,032	+		GFF5007	0.90	+0.2
5,002,046	+				-0.5
5,002,051	+				-0.0
5,002,051	+				-0.2
5,002,051	+				-0.7
5,002,054	+				-0.0
5,002,054	+				-1.6
5,002,062	-				-0.7
5,002,062	-				-0.2
5,002,062	-				+0.3
5,002,090	+				-0.7
5,002,093	+				+1.3
5,002,093	+				+0.3
5,002,098	+				-1.7
5,002,098	+				+0.4
5,002,103	+				+0.0
5,002,103	-				-1.3
5,002,106	-				+0.9
5,002,126	-				+0.4
5,002,139	-				+0.2
5,002,153	-				+0.0
5,002,153	-				-0.1
5,002,193	-				-1.9
5,002,193	-				+0.5
5,002,193	-				+1.2
5,002,193	-				-0.1
5,002,193	-				+0.2
5,002,193	-				+1.7
5,002,203	-				+0.4
5,002,203	-				-1.5
5,002,203	-				-0.7
5,002,205	+				-0.1
5,002,214	+				-0.2
5,002,214	+				-0.5
5,002,214	+				-1.3
5,002,214	+				+0.7
5,002,214	+				+1.0
5,002,214	+				-1.4
5,002,214	+				+0.7
5,002,214	+				-0.1
5,002,214	+				+0.6
5,002,214	+				-1.3
5,002,227	+				-1.8
5,002,231	+				+0.2
5,002,246	-				-2.6
5,002,258	+				-1.8
5,002,258	+				+0.0
5,002,258	+				+1.0
5,002,265	+				-0.1
5,002,266	-				+0.5
5,002,266	-				-0.5
5,002,273	-				-0.9
5,002,281	-		GFF5008	0.10	+0.5
5,002,298	+		GFF5008	0.12	+0.5
5,002,305	+		GFF5008	0.13	+0.5
5,002,305	+		GFF5008	0.13	-0.7
5,002,309	+		GFF5008	0.13	-1.5
5,002,313	-		GFF5008	0.14	-0.4
5,002,321	+		GFF5008	0.15	-2.4
5,002,342	+		GFF5008	0.17	-0.6
5,002,350	-		GFF5008	0.18	-1.3
5,002,350	-		GFF5008	0.18	-1.3
5,002,355	+		GFF5008	0.18	+1.2
5,002,355	+		GFF5008	0.18	-0.6
5,002,355	+		GFF5008	0.18	-0.9
5,002,355	+		GFF5008	0.18	-0.2
5,002,355	+		GFF5008	0.18	-1.3
5,002,355	+		GFF5008	0.18	+0.7
5,002,358	-		GFF5008	0.19	+0.9
5,002,358	-		GFF5008	0.19	+1.0
5,002,360	+		GFF5008	0.19	-1.3
5,002,363	-		GFF5008	0.19	-1.0
5,002,363	-		GFF5008	0.19	-1.0
5,002,368	-		GFF5008	0.20	-0.5
5,002,368	-		GFF5008	0.20	-0.4
5,002,376	+		GFF5008	0.21	+0.6
5,002,382	-		GFF5008	0.21	+1.5
5,002,394	+		GFF5008	0.23	+0.6
5,002,397	+		GFF5008	0.23	+1.1
5,002,405	-		GFF5008	0.24	-1.7
5,002,422	-		GFF5008	0.26	-2.4
5,002,437	+		GFF5008	0.28	+1.0
5,002,443	-		GFF5008	0.28	-1.0
5,002,443	-		GFF5008	0.28	+0.3
5,002,443	-		GFF5008	0.28	+1.1
5,002,458	-		GFF5008	0.30	+1.2
5,002,460	+		GFF5008	0.30	-1.7
5,002,470	+		GFF5008	0.31	+0.2
5,002,475	+		GFF5008	0.32	+1.4
5,002,478	-		GFF5008	0.32	-0.1
5,002,483	-		GFF5008	0.33	+1.1
5,002,516	+		GFF5008	0.36	-0.0
5,002,516	+		GFF5008	0.36	+1.7
5,002,516	+		GFF5008	0.36	-0.1
5,002,516	+		GFF5008	0.36	-0.8
5,002,516	+		GFF5008	0.36	-0.3
5,002,516	+		GFF5008	0.36	-0.1
5,002,516	+		GFF5008	0.36	-0.8
5,002,524	-		GFF5008	0.37	-1.3
5,002,524	-		GFF5008	0.37	+0.4
5,002,524	-		GFF5008	0.37	-0.1
5,002,531	+		GFF5008	0.38	-0.6
5,002,540	-		GFF5008	0.39	-0.2
5,002,549	+		GFF5008	0.40	-0.5
5,002,549	+		GFF5008	0.40	-0.3
5,002,553	+		GFF5008	0.40	+0.7
5,002,553	+		GFF5008	0.40	-1.8
5,002,557	-		GFF5008	0.41	-0.1
5,002,561	-		GFF5008	0.41	+0.4
5,002,561	-		GFF5008	0.41	-0.5
5,002,564	+		GFF5008	0.42	+0.8
5,002,566	-		GFF5008	0.42	+0.4
5,002,582	+		GFF5008	0.44	+0.3
5,002,582	+		GFF5008	0.44	+1.4
5,002,584	+		GFF5008	0.44	+1.5
5,002,592	-		GFF5008	0.45	-0.0
5,002,595	-		GFF5008	0.45	+1.3
5,002,609	+		GFF5008	0.47	-1.5
5,002,623	-		GFF5008	0.48	-0.2
5,002,626	-		GFF5008	0.49	-2.5
5,002,665	-		GFF5008	0.53	-0.2
5,002,666	-		GFF5008	0.53	-0.3
5,002,687	+		GFF5008	0.55	-0.5
5,002,694	+		GFF5008	0.56	+0.8
5,002,695	-		GFF5008	0.56	+1.6
5,002,702	-		GFF5008	0.57	-2.0
5,002,709	-		GFF5008	0.58	+0.4
5,002,961	+		GFF5008	0.86	+0.3
5,002,961	+		GFF5008	0.86	-1.5
5,002,969	-		GFF5008	0.86	+0.1
5,002,969	-		GFF5008	0.86	+1.0
5,002,969	-		GFF5008	0.86	+1.1
5,002,969	-		GFF5008	0.86	+0.0
5,002,969	-		GFF5008	0.86	+0.6
5,002,970	-		GFF5008	0.87	+0.3
5,003,002	+				+1.4
5,003,031	-				-0.5
5,003,038	-				-1.0
5,003,090	+				-0.4
5,003,138	+				-0.4
5,003,145	+				-0.0
5,003,145	+				+1.2
5,003,145	+				-2.0
5,003,145	+				+0.9
5,003,145	+				+0.3
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