Strain Fitness in Sphingobium sp. HT1-2 around GFF4900

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,890,796	+		GFF4898	0.50	-1.6
4,890,797	+		GFF4898	0.50	-0.9
4,890,797	+		GFF4898	0.50	-2.2
4,890,797	+		GFF4898	0.50	+0.2
4,890,797	+		GFF4898	0.50	-0.2
4,890,797	+		GFF4898	0.50	+0.3
4,890,801	+		GFF4898	0.51	+1.3
4,890,801	+		GFF4898	0.51	+0.9
4,890,804	-		GFF4898	0.52	-0.1
4,890,804	-		GFF4898	0.52	+0.0
4,890,804	-		GFF4898	0.52	-1.0
4,890,805	-		GFF4898	0.52	+0.1
4,890,805	-		GFF4898	0.52	-2.0
4,890,805	-		GFF4898	0.52	+0.2
4,890,805	-		GFF4898	0.52	+1.1
4,890,805	-		GFF4898	0.52	-1.9
4,890,805	-		GFF4898	0.52	-0.6
4,890,806	-		GFF4898	0.52	-2.2
4,890,809	-		GFF4898	0.53	-1.0
4,890,825	+		GFF4898	0.57	-1.6
4,890,833	-		GFF4898	0.59	-0.3
4,890,883	+		GFF4898	0.71	-1.5
4,890,891	+		GFF4898	0.73	-0.6
4,890,926	-		GFF4898	0.82	-1.2
4,890,926	-		GFF4898	0.82	-0.8
4,890,939	+		GFF4898	0.85	+0.8
4,890,939	+		GFF4898	0.85	-0.4
4,890,939	+		GFF4898	0.85	+0.1
4,890,944	+		GFF4898	0.87	-0.1
4,890,952	-		GFF4898	0.89	-2.7
4,890,962	+				-2.2
4,890,962	+				-1.7
4,890,965	-				-0.8
4,890,965	-				+0.5
4,890,967	+				+0.5
4,890,967	+				+0.2
4,890,970	-				-2.4
4,890,975	-				+0.0
4,890,977	+				+0.6
4,890,992	+				-0.8
4,891,000	-				+0.6
4,891,007	+				-1.9
4,891,043	-				-1.5
4,891,084	+		GFF4899	0.12	-0.5
4,891,087	-		GFF4899	0.12	-2.4
4,891,088	+		GFF4899	0.12	-0.6
4,891,088	+		GFF4899	0.12	+0.0
4,891,089	+		GFF4899	0.12	+0.7
4,891,092	-		GFF4899	0.13	+0.2
4,891,128	+		GFF4899	0.18	+0.7
4,891,138	+		GFF4899	0.19	-1.6
4,891,138	+		GFF4899	0.19	-0.0
4,891,138	+		GFF4899	0.19	-1.5
4,891,146	-		GFF4899	0.20	+0.3
4,891,146	-		GFF4899	0.20	-1.5
4,891,146	-		GFF4899	0.20	+0.0
4,891,146	-		GFF4899	0.20	-0.7
4,891,159	-		GFF4899	0.22	+0.1
4,891,165	+		GFF4899	0.23	-2.1
4,891,169	-		GFF4899	0.24	-0.9
4,891,190	-		GFF4899	0.27	-1.2
4,891,200	-		GFF4899	0.28	-0.6
4,891,216	+		GFF4899	0.31	-0.6
4,891,226	-		GFF4899	0.32	-2.0
4,891,227	+		GFF4899	0.32	-0.6
4,891,227	+		GFF4899	0.32	-1.0
4,891,228	+		GFF4899	0.32	+0.1
4,891,235	-		GFF4899	0.33	-3.1
4,891,245	-		GFF4899	0.35	-0.1
4,891,248	+		GFF4899	0.35	-0.2
4,891,250	+		GFF4899	0.35	+0.5
4,891,257	+		GFF4899	0.37	-1.0
4,891,258	+		GFF4899	0.37	-0.7
4,891,266	-		GFF4899	0.38	+0.0
4,891,311	-		GFF4899	0.44	-0.6
4,891,317	-		GFF4899	0.45	+0.2
4,891,317	-		GFF4899	0.45	-0.8
4,891,321	+		GFF4899	0.46	-1.5
4,891,323	-		GFF4899	0.46	-1.4
4,891,327	+		GFF4899	0.47	+0.0
4,891,329	-		GFF4899	0.47	-0.1
4,891,329	-		GFF4899	0.47	+0.3
4,891,329	-		GFF4899	0.47	-0.5
4,891,358	+		GFF4899	0.51	-0.6
4,891,358	+		GFF4899	0.51	-2.3
4,891,358	+		GFF4899	0.51	+0.4
4,891,359	-		GFF4899	0.51	-1.8
4,891,366	+		GFF4899	0.52	-1.5
4,891,366	-		GFF4899	0.52	-0.5
4,891,374	-		GFF4899	0.53	+0.0
4,891,374	-		GFF4899	0.53	-0.3
4,891,376	+		GFF4899	0.54	+1.7
4,891,394	+		GFF4899	0.56	-2.1
4,891,401	-		GFF4899	0.57	-0.2
4,891,413	+		GFF4899	0.59	+0.0
4,891,426	+		GFF4899	0.61	-1.6
4,891,462	+		GFF4899	0.66	-2.6
4,891,462	+		GFF4899	0.66	-0.3
4,891,467	+		GFF4899	0.67	-0.3
4,891,467	+		GFF4899	0.67	+1.1
4,891,470	-		GFF4899	0.67	-1.7
4,891,470	-		GFF4899	0.67	-1.1
4,891,475	-		GFF4899	0.68	-1.0
4,891,475	-		GFF4899	0.68	+1.0
4,891,475	-		GFF4899	0.68	+0.3
4,891,475	-		GFF4899	0.68	-0.2
4,891,475	-		GFF4899	0.68	-1.5
4,891,475	-		GFF4899	0.68	-1.6
4,891,480	-		GFF4899	0.69	+0.8
4,891,480	-		GFF4899	0.69	+0.1
4,891,500	+		GFF4899	0.72	-1.4
4,891,500	-		GFF4899	0.72	-0.3
4,891,526	-		GFF4899	0.75	+0.0
4,891,540	-		GFF4899	0.77	-1.2
4,891,552	+		GFF4899	0.79	-0.6
4,891,552	+		GFF4899	0.79	-0.6
4,891,560	-		GFF4899	0.80	-3.0
4,891,560	-		GFF4899	0.80	-0.8
4,891,560	-		GFF4899	0.80	-1.4
4,891,560	-		GFF4899	0.80	-0.7
4,891,563	+		GFF4899	0.81	+0.4
4,891,563	+		GFF4899	0.81	-0.1
4,891,563	+		GFF4899	0.81	+0.7
4,891,563	+		GFF4899	0.81	-0.5
4,891,564	-		GFF4899	0.81	-1.6
4,891,571	-		GFF4899	0.82	+1.3
4,891,575	+		GFF4899	0.82	+1.5
4,891,575	+		GFF4899	0.82	-0.6
4,891,578	-		GFF4899	0.83	-0.9
4,891,583	-		GFF4899	0.84	+0.7
4,891,591	+		GFF4899	0.85	-0.9
4,891,596	+		GFF4899	0.85	-0.3
4,891,610	+		GFF4899	0.87	-3.2
4,891,618	-		GFF4899	0.89	-1.4
4,891,618	-		GFF4899	0.89	-0.5
4,891,624	-		GFF4899	0.89	+0.7
4,891,658	+				-1.7
4,891,658	+				+0.2
4,891,666	-				-3.2
4,891,666	-				-1.7
4,891,692	+				-0.4
4,891,692	+				-2.1
4,891,692	+				-0.6
4,891,700	-				-1.1
4,891,700	-				-0.4
4,891,721	-				-1.5
4,891,721	-				+0.4
4,891,721	-				-0.6
4,891,730	+				+0.7
4,891,738	-				-1.5
4,891,738	-				-0.7
4,891,751	+				-0.1
4,891,751	+				-1.4
4,891,755	-				-1.0
4,891,759	-				-0.3
4,891,759	-				+0.0
4,891,773	+				-0.5
4,891,786	-				+0.2
4,891,797	-				-0.5
4,891,811	+				+0.2
4,891,820	+		GFF4900	0.11	-1.2
4,891,873	+		GFF4900	0.23	-0.2
4,891,888	+		GFF4900	0.27	-1.2
4,891,891	-		GFF4900	0.27	-1.0
4,891,896	-		GFF4900	0.29	-0.7
4,891,896	-		GFF4900	0.29	+0.0
4,891,896	-		GFF4900	0.29	-0.1
4,891,897	+		GFF4900	0.29	-0.8
4,891,897	+		GFF4900	0.29	-1.4
4,891,897	+		GFF4900	0.29	-1.8
4,891,897	+		GFF4900	0.29	-0.5
4,891,902	+		GFF4900	0.30	+0.7
4,891,905	-		GFF4900	0.31	+0.2
4,891,905	-		GFF4900	0.31	-0.5
4,891,905	-		GFF4900	0.31	-1.1
4,891,905	-		GFF4900	0.31	+0.4
4,891,910	-		GFF4900	0.32	-0.8
4,891,916	+		GFF4900	0.33	+0.7
4,891,916	+		GFF4900	0.33	+0.6
4,891,916	+		GFF4900	0.33	-0.7
4,891,916	+		GFF4900	0.33	-1.8
4,891,919	-		GFF4900	0.34	-2.0
4,891,924	-		GFF4900	0.35	+0.6
4,891,924	-		GFF4900	0.35	-0.0
4,891,924	-		GFF4900	0.35	+0.3
4,891,950	-		GFF4900	0.41	-1.7
4,891,950	-		GFF4900	0.41	-0.2
4,891,950	-		GFF4900	0.41	-0.8
4,891,981	+		GFF4900	0.49	-0.5
4,891,997	-		GFF4900	0.52	+0.1
4,892,052	+		GFF4900	0.65	-0.9
4,892,057	+		GFF4900	0.67	+0.6
4,892,058	+		GFF4900	0.67	-0.7
4,892,060	-		GFF4900	0.67	+0.1
4,892,066	+		GFF4900	0.69	+0.4
4,892,074	-		GFF4900	0.71	-0.9
4,892,088	+		GFF4900	0.74	-0.5
4,892,088	+		GFF4900	0.74	+0.3
4,892,088	+		GFF4900	0.74	-1.1
4,892,088	+		GFF4900	0.74	-1.8
4,892,088	+		GFF4900	0.74	-0.5
4,892,088	+		GFF4900	0.74	-2.1
4,892,088	+		GFF4900	0.74	-2.3
4,892,088	+		GFF4900	0.74	-1.2
4,892,096	-		GFF4900	0.76	-1.0
4,892,096	-		GFF4900	0.76	-2.0
4,892,096	-		GFF4900	0.76	-0.9
4,892,096	-		GFF4900	0.76	-1.2
4,892,096	-		GFF4900	0.76	-1.0
4,892,096	-		GFF4900	0.76	+0.4
4,892,096	-		GFF4900	0.76	-0.9
4,892,096	-		GFF4900	0.76	-0.3
4,892,096	-		GFF4900	0.76	+0.5
4,892,112	+		GFF4900	0.80	-2.2
4,892,116	+		GFF4900	0.81	-0.6
4,892,119	+		GFF4900	0.81	-2.0
4,892,124	+		GFF4900	0.83	-2.1
4,892,124	+		GFF4900	0.83	+0.5
4,892,134	+		GFF4900	0.85	+0.3
4,892,134	+		GFF4900	0.85	-0.9
4,892,134	+		GFF4900	0.85	-0.6
4,892,134	+		GFF4900	0.85	-2.2
4,892,136	+		GFF4900	0.85	-0.7
4,892,154	+		GFF4900	0.90	-0.3
4,892,202	+				-1.6
4,892,210	-				-0.1
4,892,210	-				-0.4
4,892,215	+				+0.9
4,892,226	+				-1.6
4,892,271	-				-0.7
4,892,276	+		GFF4901	0.10	-1.2
4,892,276	-		GFF4901	0.10	-1.9
4,892,276	-		GFF4901	0.10	-2.4
4,892,276	-		GFF4901	0.10	+0.2
4,892,276	-		GFF4901	0.10	-1.3
4,892,284	-		GFF4901	0.11	-0.2
4,892,293	+		GFF4901	0.13	-0.6
4,892,302	+		GFF4901	0.14	-0.6
4,892,309	+		GFF4901	0.15	-0.4
4,892,310	-		GFF4901	0.15	-0.4
4,892,310	-		GFF4901	0.15	-2.0
4,892,312	-		GFF4901	0.15	-1.8
4,892,317	-		GFF4901	0.16	-1.8
4,892,317	-		GFF4901	0.16	-2.9
4,892,328	-		GFF4901	0.17	-1.3
4,892,339	+		GFF4901	0.19	-0.6
4,892,339	+		GFF4901	0.19	-1.9
4,892,339	+		GFF4901	0.19	-1.5
4,892,339	+		GFF4901	0.19	-1.2
4,892,339	+		GFF4901	0.19	-1.1
4,892,339	+		GFF4901	0.19	-1.4
4,892,341	+		GFF4901	0.19	-1.7
4,892,347	-		GFF4901	0.20	-0.5
4,892,347	-		GFF4901	0.20	-0.1
4,892,347	-		GFF4901	0.20	-1.1
4,892,347	-		GFF4901	0.20	-1.6
4,892,347	-		GFF4901	0.20	+0.0
4,892,347	-		GFF4901	0.20	+0.3
4,892,347	-		GFF4901	0.20	-0.4
4,892,349	+		GFF4901	0.20	-1.6
4,892,359	+		GFF4901	0.21	-1.8
4,892,372	-		GFF4901	0.23	+0.2
4,892,374	+		GFF4901	0.23	-1.7
4,892,374	+		GFF4901	0.23	-0.5
4,892,385	+		GFF4901	0.25	+0.3
4,892,390	+		GFF4901	0.25	-0.5
4,892,390	+		GFF4901	0.25	-1.6
4,892,394	+		GFF4901	0.26	-1.5
4,892,402	-		GFF4901	0.27	-1.6
4,892,406	+		GFF4901	0.27	-1.8
4,892,406	+		GFF4901	0.27	-0.1
4,892,408	-		GFF4901	0.28	-1.4
4,892,426	+		GFF4901	0.30	+0.4
4,892,430	-		GFF4901	0.31	+0.3
4,892,434	-		GFF4901	0.31	+0.2
4,892,434	-		GFF4901	0.31	+0.3
4,892,434	-		GFF4901	0.31	-0.6
4,892,434	-		GFF4901	0.31	+0.7
4,892,461	+		GFF4901	0.35	-1.6
4,892,461	+		GFF4901	0.35	+0.2
4,892,465	+		GFF4901	0.35	+0.1
4,892,475	-		GFF4901	0.36	+0.9
4,892,480	+		GFF4901	0.37	-0.0
4,892,488	-		GFF4901	0.38	+1.1
4,892,488	-		GFF4901	0.38	-1.2
4,892,488	-		GFF4901	0.38	-3.1
4,892,507	+		GFF4901	0.41	+1.8
4,892,508	+		GFF4901	0.41	-0.4
4,892,508	+		GFF4901	0.41	-0.2
4,892,516	-		GFF4901	0.42	+0.6
4,892,516	-		GFF4901	0.42	-0.4
4,892,516	-		GFF4901	0.42	+0.1
4,892,546	+		GFF4901	0.46	-0.2
4,892,546	+		GFF4901	0.46	-0.6
4,892,546	+		GFF4901	0.46	-1.3
4,892,546	+		GFF4901	0.46	-0.4
4,892,554	-		GFF4901	0.47	-0.4
4,892,554	-		GFF4901	0.47	+0.7
4,892,554	-		GFF4901	0.47	-1.2
4,892,554	-		GFF4901	0.47	-0.5
4,892,554	-		GFF4901	0.47	-0.4
4,892,554	-		GFF4901	0.47	+0.0
4,892,557	+		GFF4901	0.47	+0.8
4,892,565	-		GFF4901	0.48	-0.5
4,892,603	-		GFF4901	0.53	-0.4
4,892,610	-		GFF4901	0.54	-1.5
4,892,610	-		GFF4901	0.54	+0.3
4,892,623	-		GFF4901	0.56	-1.1
4,892,623	-		GFF4901	0.56	-2.1
4,892,623	-		GFF4901	0.56	-2.2
4,892,627	+		GFF4901	0.56	-0.9
4,892,635	-		GFF4901	0.57	+0.8
4,892,635	-		GFF4901	0.57	+0.5
4,892,635	-		GFF4901	0.57	-0.3
4,892,641	-		GFF4901	0.58	-1.5
4,892,641	-		GFF4901	0.58	-0.6
4,892,645	-		GFF4901	0.59	-1.1
4,892,651	-		GFF4901	0.60	-0.6
4,892,663	+		GFF4901	0.61	-0.6
4,892,663	+		GFF4901	0.61	+0.0
4,892,671	-		GFF4901	0.62	-1.7
4,892,671	-		GFF4901	0.62	+1.4
4,892,679	+		GFF4901	0.63	-0.7
4,892,687	-		GFF4901	0.64	-0.3
4,892,740	+		GFF4901	0.71	-1.1
4,892,740	+		GFF4901	0.71	-1.4
4,892,740	+		GFF4901	0.71	-0.6
4,892,740	+		GFF4901	0.71	-0.5
4,892,740	+		GFF4901	0.71	-0.7
4,892,740	+		GFF4901	0.71	-0.6
4,892,743	-		GFF4901	0.72	+0.7
4,892,748	-		GFF4901	0.72	-0.7
4,892,748	-		GFF4901	0.72	-0.7
4,892,748	-		GFF4901	0.72	-0.3
4,892,748	-		GFF4901	0.72	+0.6
4,892,748	-		GFF4901	0.72	-0.9
4,892,748	-		GFF4901	0.72	-0.0
4,892,761	+		GFF4901	0.74	-3.0
4,892,764	+		GFF4901	0.74	-0.3
4,892,772	-		GFF4901	0.75	+1.1
4,892,776	+		GFF4901	0.76	-1.5
4,892,792	+		GFF4901	0.78	-0.1
4,892,792	+		GFF4901	0.78	+0.6
4,892,792	+		GFF4901	0.78	-0.0
4,892,792	+		GFF4901	0.78	+1.6
4,892,800	-		GFF4901	0.79	+0.1
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4,892,899	+				+0.4
4,892,899	+				-0.3
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4,892,915	-				+0.8
4,892,933	+				-1.9
4,892,933	+				-0.7
4,892,933	+				-2.9
4,892,941	-				+0.1
4,892,941	-				-1.2
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4,892,966	+				-1.9
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4,892,974	-				-0.9
4,892,974	-				-1.3
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4,892,984	-				-1.0
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4,892,985	+				+0.4
4,892,993	-				-0.9
4,892,993	-				-0.8
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4,892,994	-				-1.4
4,893,004	+				-0.7
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4,893,029	+				-0.0
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4,893,042	-				+0.4
4,893,051	+				-2.0
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4,893,062	-				-0.3
4,893,062	-				-1.1
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