Strain Fitness in Sphingobium sp. HT1-2 around GFF4883

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,871,276	+		GFF4882	0.25	-0.4
4,871,281	+		GFF4882	0.25	+1.0
4,871,291	+		GFF4882	0.26	-1.2
4,871,299	+		GFF4882	0.26	+0.9
4,871,309	+		GFF4882	0.27	-1.5
4,871,339	+		GFF4882	0.30	-0.3
4,871,339	+		GFF4882	0.30	-1.8
4,871,339	+		GFF4882	0.30	-0.4
4,871,347	-		GFF4882	0.30	-0.1
4,871,347	-		GFF4882	0.30	-0.0
4,871,350	+		GFF4882	0.30	+0.1
4,871,355	+		GFF4882	0.31	+0.7
4,871,355	+		GFF4882	0.31	+0.1
4,871,355	+		GFF4882	0.31	-0.5
4,871,355	+		GFF4882	0.31	-0.6
4,871,355	+		GFF4882	0.31	-2.4
4,871,355	+		GFF4882	0.31	-1.7
4,871,355	+		GFF4882	0.31	+1.4
4,871,355	+		GFF4882	0.31	-0.4
4,871,355	+		GFF4882	0.31	-0.3
4,871,355	+		GFF4882	0.31	-0.2
4,871,355	+		GFF4882	0.31	-0.4
4,871,363	-		GFF4882	0.31	+0.5
4,871,363	-		GFF4882	0.31	-0.8
4,871,363	-		GFF4882	0.31	-0.5
4,871,363	-		GFF4882	0.31	-0.5
4,871,363	-		GFF4882	0.31	+0.8
4,871,363	-		GFF4882	0.31	+0.6
4,871,363	-		GFF4882	0.31	-1.0
4,871,370	+		GFF4882	0.32	+0.1
4,871,370	+		GFF4882	0.32	-0.4
4,871,370	-		GFF4882	0.32	+0.8
4,871,372	+		GFF4882	0.32	-0.8
4,871,372	+		GFF4882	0.32	-1.1
4,871,378	-		GFF4882	0.32	-2.7
4,871,378	-		GFF4882	0.32	+1.5
4,871,378	-		GFF4882	0.32	+0.6
4,871,378	-		GFF4882	0.32	-1.5
4,871,390	-		GFF4882	0.33	+1.5
4,871,398	+		GFF4882	0.34	-0.4
4,871,398	+		GFF4882	0.34	-2.1
4,871,398	+		GFF4882	0.34	-0.3
4,871,398	+		GFF4882	0.34	+0.0
4,871,398	+		GFF4882	0.34	+0.5
4,871,404	-		GFF4882	0.34	-1.2
4,871,406	-		GFF4882	0.35	-1.0
4,871,406	-		GFF4882	0.35	+0.9
4,871,406	-		GFF4882	0.35	-0.5
4,871,406	-		GFF4882	0.35	+0.2
4,871,411	-		GFF4882	0.35	+0.7
4,871,420	-		GFF4882	0.36	+0.5
4,871,431	-		GFF4882	0.37	+1.2
4,871,447	+		GFF4882	0.38	+0.0
4,871,451	+		GFF4882	0.38	-2.6
4,871,452	+		GFF4882	0.38	-0.5
4,871,455	-		GFF4882	0.38	+0.6
4,871,455	-		GFF4882	0.38	-1.0
4,871,455	-		GFF4882	0.38	-0.2
4,871,459	-		GFF4882	0.39	-2.2
4,871,465	-		GFF4882	0.39	-1.0
4,871,478	+		GFF4882	0.40	+2.4
4,871,493	+		GFF4882	0.41	-1.4
4,871,501	-		GFF4882	0.42	-0.5
4,871,504	+		GFF4882	0.42	-0.3
4,871,513	+		GFF4882	0.43	+0.2
4,871,515	+		GFF4882	0.43	-0.8
4,871,515	+		GFF4882	0.43	+0.1
4,871,521	+		GFF4882	0.43	-2.8
4,871,521	+		GFF4882	0.43	-0.1
4,871,521	+		GFF4882	0.43	+0.2
4,871,521	+		GFF4882	0.43	+1.0
4,871,521	+		GFF4882	0.43	-0.1
4,871,521	-		GFF4882	0.43	+0.9
4,871,522	-		GFF4882	0.43	+0.3
4,871,529	-		GFF4882	0.44	-0.2
4,871,529	-		GFF4882	0.44	-1.1
4,871,529	-		GFF4882	0.44	+1.6
4,871,533	+		GFF4882	0.44	+1.2
4,871,539	-		GFF4882	0.45	-1.9
4,871,548	+		GFF4882	0.45	-0.2
4,871,600	-		GFF4882	0.49	-2.6
4,871,600	-		GFF4882	0.49	+0.7
4,871,636	+		GFF4882	0.52	+1.2
4,871,636	+		GFF4882	0.52	-0.3
4,871,644	-		GFF4882	0.53	-1.0
4,871,651	+		GFF4882	0.53	+0.2
4,871,651	+		GFF4882	0.53	-1.5
4,871,659	-		GFF4882	0.54	-1.5
4,871,659	-		GFF4882	0.54	-0.7
4,871,661	+		GFF4882	0.54	-1.7
4,871,665	+		GFF4882	0.54	+0.0
4,871,669	+		GFF4882	0.55	-1.3
4,871,682	-		GFF4882	0.56	-2.1
4,871,686	+		GFF4882	0.56	+0.0
4,871,689	-		GFF4882	0.56	-0.1
4,871,702	+		GFF4882	0.57	-1.5
4,871,725	+		GFF4882	0.59	+0.7
4,871,725	+		GFF4882	0.59	-0.8
4,871,733	-		GFF4882	0.60	-0.6
4,871,733	-		GFF4882	0.60	-1.6
4,871,738	-		GFF4882	0.60	-0.5
4,871,738	-		GFF4882	0.60	+1.2
4,871,740	+		GFF4882	0.60	+0.1
4,871,745	+		GFF4882	0.60	-0.4
4,871,745	+		GFF4882	0.60	-2.1
4,871,748	-		GFF4882	0.61	+1.6
4,871,753	-		GFF4882	0.61	-0.2
4,871,753	-		GFF4882	0.61	+0.8
4,871,753	-		GFF4882	0.61	-2.1
4,871,759	+		GFF4882	0.61	-0.2
4,871,768	-		GFF4882	0.62	-0.8
4,871,794	-		GFF4882	0.64	+0.7
4,871,819	+		GFF4882	0.66	+0.5
4,871,832	-		GFF4882	0.67	-1.5
4,871,840	-		GFF4882	0.68	-2.0
4,871,840	-		GFF4882	0.68	-0.1
4,871,840	-		GFF4882	0.68	+0.1
4,871,850	-		GFF4882	0.68	-0.6
4,871,877	-		GFF4882	0.70	-0.5
4,871,878	+		GFF4882	0.71	+0.2
4,871,885	+		GFF4882	0.71	-1.9
4,871,888	+		GFF4882	0.71	+0.1
4,871,898	+		GFF4882	0.72	-2.9
4,871,898	+		GFF4882	0.72	-0.8
4,871,898	+		GFF4882	0.72	-1.1
4,871,898	+		GFF4882	0.72	+0.4
4,871,906	-		GFF4882	0.73	-0.1
4,871,914	+		GFF4882	0.73	+1.5
4,871,917	+		GFF4882	0.74	-2.1
4,871,917	+		GFF4882	0.74	-2.4
4,871,919	+		GFF4882	0.74	-2.4
4,871,927	-		GFF4882	0.74	+0.0
4,871,927	-		GFF4882	0.74	-1.7
4,871,938	-		GFF4882	0.75	-0.6
4,871,943	-		GFF4882	0.75	+0.9
4,871,945	+		GFF4882	0.76	-1.8
4,871,945	+		GFF4882	0.76	+0.4
4,871,953	-		GFF4882	0.76	-1.3
4,871,967	+		GFF4882	0.77	-0.7
4,871,967	+		GFF4882	0.77	-0.3
4,871,967	-		GFF4882	0.77	-0.7
4,871,985	-		GFF4882	0.79	-0.7
4,871,988	-		GFF4882	0.79	-0.6
4,871,996	+		GFF4882	0.80	-0.5
4,871,996	+		GFF4882	0.80	+1.6
4,872,002	+		GFF4882	0.80	-1.9
4,872,004	-		GFF4882	0.80	-0.0
4,872,004	-		GFF4882	0.80	+0.4
4,872,004	-		GFF4882	0.80	+0.8
4,872,004	-		GFF4882	0.80	-0.6
4,872,007	+		GFF4882	0.80	-0.5
4,872,007	+		GFF4882	0.80	+0.6
4,872,007	+		GFF4882	0.80	+1.2
4,872,007	+		GFF4882	0.80	-0.3
4,872,007	+		GFF4882	0.80	+0.3
4,872,007	+		GFF4882	0.80	-1.3
4,872,010	-		GFF4882	0.81	+0.0
4,872,012	+		GFF4882	0.81	-0.4
4,872,012	+		GFF4882	0.81	-0.3
4,872,015	-		GFF4882	0.81	+0.5
4,872,015	-		GFF4882	0.81	-0.4
4,872,015	-		GFF4882	0.81	+0.5
4,872,015	-		GFF4882	0.81	+0.5
4,872,020	-		GFF4882	0.81	-0.5
4,872,020	-		GFF4882	0.81	-0.2
4,872,020	-		GFF4882	0.81	-0.0
4,872,025	-		GFF4882	0.82	+0.8
4,872,025	-		GFF4882	0.82	+0.2
4,872,046	-		GFF4882	0.83	-0.6
4,872,046	-		GFF4882	0.83	-1.1
4,872,058	+		GFF4882	0.84	-0.4
4,872,066	-		GFF4882	0.85	-1.5
4,872,066	-		GFF4882	0.85	-0.1
4,872,092	+		GFF4882	0.87	-2.2
4,872,092	-		GFF4882	0.87	+1.1
4,872,101	-		GFF4882	0.88	-0.9
4,872,111	+		GFF4882	0.88	-0.6
4,872,128	-		GFF4882	0.90	-0.7
4,872,141	+				+0.3
4,872,141	+				+0.4
4,872,149	-				-0.8
4,872,154	-				-0.6
4,872,156	-				-1.2
4,872,164	+				-1.2
4,872,172	-				+0.7
4,872,182	-				-1.4
4,872,185	+				-0.6
4,872,193	+				-0.6
4,872,193	-				-1.8
4,872,212	-				-0.5
4,872,231	+				-1.2
4,872,256	-				-1.4
4,872,317	+				+0.0
4,872,334	-				+0.3
4,872,337	+				+0.3
4,872,338	+				+0.8
4,872,346	-				+1.1
4,872,348	-				-0.5
4,872,356	+				-2.6
4,872,356	-				-0.2
4,872,364	-				+0.3
4,872,364	-				-1.4
4,872,372	+				+0.2
4,872,372	+				+0.0
4,872,377	+		GFF4883	0.10	+0.1
4,872,380	-		GFF4883	0.11	-0.5
4,872,382	+		GFF4883	0.11	-0.9
4,872,382	+		GFF4883	0.11	-0.7
4,872,385	-		GFF4883	0.11	+0.4
4,872,385	-		GFF4883	0.11	-0.2
4,872,390	-		GFF4883	0.12	-0.6
4,872,390	-		GFF4883	0.12	+0.4
4,872,391	+		GFF4883	0.12	-0.2
4,872,393	+		GFF4883	0.12	+0.3
4,872,399	-		GFF4883	0.13	-0.1
4,872,401	-		GFF4883	0.13	-0.0
4,872,401	-		GFF4883	0.13	+0.9
4,872,461	+		GFF4883	0.19	-0.7
4,872,461	+		GFF4883	0.19	+0.1
4,872,469	-		GFF4883	0.20	-2.1
4,872,470	+		GFF4883	0.20	-1.8
4,872,480	+		GFF4883	0.21	-0.1
4,872,493	-		GFF4883	0.22	+0.3
4,872,515	+		GFF4883	0.24	-0.6
4,872,543	-		GFF4883	0.27	-1.8
4,872,545	+		GFF4883	0.27	-1.5
4,872,577	+		GFF4883	0.30	+0.5
4,872,577	+		GFF4883	0.30	-1.0
4,872,582	+		GFF4883	0.31	-0.4
4,872,601	+		GFF4883	0.33	-1.4
4,872,605	+		GFF4883	0.33	+0.2
4,872,611	+		GFF4883	0.34	-0.3
4,872,611	+		GFF4883	0.34	+0.9
4,872,615	+		GFF4883	0.34	-0.8
4,872,619	-		GFF4883	0.35	-2.4
4,872,619	-		GFF4883	0.35	-0.1
4,872,619	-		GFF4883	0.35	-0.1
4,872,619	-		GFF4883	0.35	-0.2
4,872,619	-		GFF4883	0.35	-1.5
4,872,619	-		GFF4883	0.35	-0.5
4,872,619	-		GFF4883	0.35	-0.1
4,872,619	-		GFF4883	0.35	+1.3
4,872,619	-		GFF4883	0.35	+0.8
4,872,637	+		GFF4883	0.36	+0.6
4,872,637	+		GFF4883	0.36	-0.9
4,872,637	+		GFF4883	0.36	-0.2
4,872,637	+		GFF4883	0.36	-1.5
4,872,637	+		GFF4883	0.36	-1.4
4,872,637	+		GFF4883	0.36	+0.6
4,872,637	+		GFF4883	0.36	+0.7
4,872,637	+		GFF4883	0.36	-0.7
4,872,637	+		GFF4883	0.36	+0.3
4,872,640	-		GFF4883	0.37	+0.2
4,872,645	-		GFF4883	0.37	-0.1
4,872,645	-		GFF4883	0.37	-0.4
4,872,645	-		GFF4883	0.37	+0.5
4,872,645	-		GFF4883	0.37	-0.3
4,872,645	-		GFF4883	0.37	-0.9
4,872,645	-		GFF4883	0.37	-1.4
4,872,645	-		GFF4883	0.37	+0.9
4,872,645	-		GFF4883	0.37	+0.9
4,872,645	-		GFF4883	0.37	-0.0
4,872,645	-		GFF4883	0.37	+0.3
4,872,645	-		GFF4883	0.37	-0.8
4,872,711	+		GFF4883	0.44	+0.2
4,872,716	+		GFF4883	0.44	+0.4
4,872,739	+		GFF4883	0.47	-2.0
4,872,747	-		GFF4883	0.47	-0.1
4,872,752	+		GFF4883	0.48	-0.6
4,872,752	-		GFF4883	0.48	+0.3
4,872,760	-		GFF4883	0.49	+0.3
4,872,766	+		GFF4883	0.49	-1.8
4,872,772	-		GFF4883	0.50	+0.4
4,872,800	+		GFF4883	0.53	+0.6
4,872,800	+		GFF4883	0.53	-0.8
4,872,808	-		GFF4883	0.54	-1.4
4,872,845	-		GFF4883	0.57	+0.8
4,872,845	-		GFF4883	0.57	+0.2
4,872,845	-		GFF4883	0.57	+1.2
4,872,856	+		GFF4883	0.58	-1.4
4,872,862	+		GFF4883	0.59	+0.1
4,872,864	+		GFF4883	0.59	+0.1
4,872,872	-		GFF4883	0.60	+1.0
4,872,872	-		GFF4883	0.60	-1.9
4,872,872	-		GFF4883	0.60	+0.0
4,872,872	-		GFF4883	0.60	-0.9
4,872,892	-		GFF4883	0.62	-0.0
4,872,893	+		GFF4883	0.62	+1.0
4,872,900	+		GFF4883	0.63	-1.0
4,872,908	-		GFF4883	0.64	-2.3
4,872,916	+		GFF4883	0.64	-0.8
4,872,916	+		GFF4883	0.64	-0.2
4,872,916	+		GFF4883	0.64	+1.5
4,872,924	-		GFF4883	0.65	+0.5
4,872,924	-		GFF4883	0.65	-0.5
4,872,924	-		GFF4883	0.65	+0.5
4,872,936	-		GFF4883	0.66	-0.5
4,872,961	+		GFF4883	0.69	-0.8
4,872,975	-		GFF4883	0.70	-0.4
4,872,989	+		GFF4883	0.72	-0.3
4,872,994	+		GFF4883	0.72	-1.6
4,872,994	+		GFF4883	0.72	+1.2
4,873,002	+		GFF4883	0.73	-0.9
4,873,007	+		GFF4883	0.74	-0.3
4,873,007	+		GFF4883	0.74	+0.0
4,873,007	+		GFF4883	0.74	-2.1
4,873,007	+		GFF4883	0.74	-0.7
4,873,007	+		GFF4883	0.74	-1.6
4,873,007	-		GFF4883	0.74	+0.1
4,873,015	-		GFF4883	0.74	+0.0
4,873,029	+		GFF4883	0.76	+1.3
4,873,037	-		GFF4883	0.77	-0.0
4,873,037	-		GFF4883	0.77	+0.6
4,873,047	+		GFF4883	0.78	+0.4
4,873,055	-		GFF4883	0.78	+0.3
4,873,068	-		GFF4883	0.80	+0.1
4,873,084	-		GFF4883	0.81	-0.5
4,873,095	+		GFF4883	0.82	+0.9
4,873,095	+		GFF4883	0.82	-0.1
4,873,103	-		GFF4883	0.83	-0.4
4,873,103	-		GFF4883	0.83	-0.7
4,873,103	-		GFF4883	0.83	+0.2
4,873,103	-		GFF4883	0.83	+0.7
4,873,103	-		GFF4883	0.83	-1.9
4,873,104	-		GFF4883	0.83	-2.1
4,873,127	+		GFF4883	0.86	-0.7
4,873,127	+		GFF4883	0.86	-1.1
4,873,127	+		GFF4883	0.86	+0.2
4,873,127	+		GFF4883	0.86	-0.5
4,873,135	-		GFF4883	0.86	-0.0
4,873,135	-		GFF4883	0.86	+0.2
4,873,135	-		GFF4883	0.86	+0.2
4,873,135	-		GFF4883	0.86	-2.8
4,873,135	-		GFF4883	0.86	-0.2
4,873,135	-		GFF4883	0.86	-2.1
4,873,140	+		GFF4883	0.87	-0.2
4,873,140	+		GFF4883	0.87	-1.2
4,873,140	+		GFF4883	0.87	-0.3
4,873,148	-		GFF4883	0.88	-0.4
4,873,148	-		GFF4883	0.88	-1.5
4,873,148	-		GFF4883	0.88	+1.4
4,873,161	+		GFF4883	0.89	-1.6
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