Strain Fitness in Sphingobium sp. HT1-2 around GFF4865

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,851,535	+		GFF4863	0.23	-1.9
4,851,535	+		GFF4863	0.23	-0.7
4,851,535	+		GFF4863	0.23	-1.0
4,851,543	-		GFF4863	0.24	-0.6
4,851,543	-		GFF4863	0.24	+1.5
4,851,545	-		GFF4863	0.24	+0.6
4,851,554	+		GFF4863	0.26	-2.0
4,851,562	-		GFF4863	0.28	+1.5
4,851,589	+		GFF4863	0.32	-0.3
4,851,589	+		GFF4863	0.32	-0.3
4,851,589	+		GFF4863	0.32	+0.9
4,851,589	+		GFF4863	0.32	-1.3
4,851,589	+		GFF4863	0.32	-0.7
4,851,589	+		GFF4863	0.32	-0.1
4,851,589	+		GFF4863	0.32	+1.0
4,851,589	+		GFF4863	0.32	-1.0
4,851,589	+		GFF4863	0.32	-0.3
4,851,589	+		GFF4863	0.32	-0.5
4,851,589	+		GFF4863	0.32	+0.8
4,851,589	+		GFF4863	0.32	+0.5
4,851,589	+		GFF4863	0.32	+0.2
4,851,589	+		GFF4863	0.32	-1.1
4,851,589	+		GFF4863	0.32	+1.5
4,851,597	-		GFF4863	0.34	-0.7
4,851,597	-		GFF4863	0.34	-1.1
4,851,597	-		GFF4863	0.34	-1.2
4,851,597	-		GFF4863	0.34	+1.4
4,851,597	-		GFF4863	0.34	-0.7
4,851,597	-		GFF4863	0.34	+0.3
4,851,597	-		GFF4863	0.34	+0.8
4,851,597	-		GFF4863	0.34	-0.5
4,851,597	-		GFF4863	0.34	+1.7
4,851,597	-		GFF4863	0.34	-0.8
4,851,597	-		GFF4863	0.34	-1.3
4,851,597	-		GFF4863	0.34	+0.8
4,851,597	-		GFF4863	0.34	+0.9
4,851,601	+		GFF4863	0.35	+0.1
4,851,624	+		GFF4863	0.39	-0.3
4,851,652	-		GFF4863	0.44	+0.4
4,851,652	-		GFF4863	0.44	+1.2
4,851,715	-		GFF4863	0.55	+1.4
4,851,715	-		GFF4863	0.55	-0.1
4,851,723	+		GFF4863	0.57	-1.1
4,851,724	+		GFF4863	0.57	+1.2
4,851,724	+		GFF4863	0.57	+0.2
4,851,724	+		GFF4863	0.57	-0.5
4,851,724	+		GFF4863	0.57	+0.8
4,851,724	+		GFF4863	0.57	-0.3
4,851,724	+		GFF4863	0.57	-1.7
4,851,724	+		GFF4863	0.57	-0.3
4,851,724	+		GFF4863	0.57	+1.2
4,851,724	+		GFF4863	0.57	+0.2
4,851,724	+		GFF4863	0.57	-1.1
4,851,724	+		GFF4863	0.57	-1.0
4,851,731	-		GFF4863	0.58	+1.4
4,851,732	-		GFF4863	0.58	+0.5
4,851,732	-		GFF4863	0.58	+0.8
4,851,732	-		GFF4863	0.58	+0.6
4,851,732	-		GFF4863	0.58	-0.5
4,851,732	-		GFF4863	0.58	-0.5
4,851,732	-		GFF4863	0.58	+0.3
4,851,732	-		GFF4863	0.58	+0.5
4,851,732	-		GFF4863	0.58	-1.0
4,851,732	-		GFF4863	0.58	-0.0
4,851,752	+		GFF4863	0.62	-2.0
4,851,777	+		GFF4863	0.67	+1.0
4,851,777	+		GFF4863	0.67	+1.5
4,851,798	-		GFF4863	0.70	+0.3
4,851,799	+		GFF4863	0.71	-0.2
4,851,809	+		GFF4863	0.72	+0.3
4,851,809	+		GFF4863	0.72	-0.5
4,851,819	+		GFF4863	0.74	+0.0
4,851,835	+		GFF4863	0.77	-0.3
4,851,835	+		GFF4863	0.77	+1.3
4,851,836	+		GFF4863	0.77	-0.8
4,851,837	-		GFF4863	0.78	+1.6
4,851,853	+		GFF4863	0.81	+0.6
4,851,861	-		GFF4863	0.82	-2.1
4,851,861	-		GFF4863	0.82	+0.2
4,851,875	+		GFF4863	0.85	-0.6
4,851,875	+		GFF4863	0.85	+0.1
4,851,877	-		GFF4863	0.85	-1.5
4,851,877	-		GFF4863	0.85	-0.1
4,851,883	-		GFF4863	0.86	-1.0
4,851,884	-		GFF4863	0.86	+1.0
4,851,889	+		GFF4863	0.87	-0.4
4,851,895	+		GFF4863	0.88	-0.7
4,851,895	+		GFF4863	0.88	-1.9
4,851,903	-		GFF4863	0.90	+1.0
4,851,939	+				+0.8
4,851,939	+				+0.2
4,851,939	+				-0.2
4,851,944	+				+0.6
4,851,947	-				-1.5
4,851,962	+				-0.1
4,851,970	+				+0.5
4,851,970	-				+0.9
4,851,980	+				+0.7
4,851,980	+				-0.8
4,851,980	+				-0.3
4,851,992	+				+1.7
4,852,002	+				+0.6
4,852,004	+				-1.2
4,852,004	+				-1.2
4,852,009	+				-1.6
4,852,009	+				-0.0
4,852,010	-				-0.3
4,852,010	-				+0.4
4,852,014	+		GFF4864	0.10	-0.1
4,852,017	-		GFF4864	0.11	+1.5
4,852,017	-		GFF4864	0.11	-1.8
4,852,017	-		GFF4864	0.11	+0.8
4,852,017	-		GFF4864	0.11	-0.5
4,852,017	-		GFF4864	0.11	+0.3
4,852,017	-		GFF4864	0.11	-0.0
4,852,017	-		GFF4864	0.11	+0.6
4,852,017	-		GFF4864	0.11	+0.2
4,852,022	-		GFF4864	0.11	-0.9
4,852,022	-		GFF4864	0.11	-1.0
4,852,022	-		GFF4864	0.11	+0.4
4,852,022	-		GFF4864	0.11	+0.3
4,852,047	+		GFF4864	0.16	+1.1
4,852,065	-		GFF4864	0.19	-0.6
4,852,110	-		GFF4864	0.27	-0.8
4,852,117	+		GFF4864	0.28	+0.4
4,852,117	+		GFF4864	0.28	-0.5
4,852,117	+		GFF4864	0.28	+1.1
4,852,125	-		GFF4864	0.29	+0.7
4,852,125	-		GFF4864	0.29	+1.3
4,852,135	-		GFF4864	0.31	-0.4
4,852,139	-		GFF4864	0.32	-1.1
4,852,196	+		GFF4864	0.42	+0.8
4,852,205	-		GFF4864	0.43	+0.2
4,852,213	+		GFF4864	0.45	+0.7
4,852,213	-		GFF4864	0.45	-0.1
4,852,228	-		GFF4864	0.47	+0.4
4,852,232	+		GFF4864	0.48	+0.1
4,852,236	-		GFF4864	0.49	-1.0
4,852,241	-		GFF4864	0.49	+1.2
4,852,243	+		GFF4864	0.50	+0.0
4,852,243	+		GFF4864	0.50	+0.2
4,852,243	+		GFF4864	0.50	-0.1
4,852,243	+		GFF4864	0.50	+1.0
4,852,251	-		GFF4864	0.51	+0.1
4,852,251	-		GFF4864	0.51	+0.5
4,852,255	+		GFF4864	0.52	-0.3
4,852,256	-		GFF4864	0.52	-0.3
4,852,256	-		GFF4864	0.52	-0.2
4,852,274	+		GFF4864	0.55	-0.5
4,852,274	-		GFF4864	0.55	-0.5
4,852,282	-		GFF4864	0.57	+0.4
4,852,307	+		GFF4864	0.61	-0.3
4,852,307	+		GFF4864	0.61	-0.9
4,852,307	+		GFF4864	0.61	+0.7
4,852,315	-		GFF4864	0.62	-1.9
4,852,315	-		GFF4864	0.62	-1.5
4,852,315	-		GFF4864	0.62	+0.7
4,852,331	+		GFF4864	0.65	-2.3
4,852,343	+		GFF4864	0.67	+0.7
4,852,352	+		GFF4864	0.69	+0.2
4,852,357	+		GFF4864	0.70	-0.3
4,852,360	-		GFF4864	0.70	+0.2
4,852,360	-		GFF4864	0.70	+0.4
4,852,360	-		GFF4864	0.70	-0.5
4,852,360	-		GFF4864	0.70	+1.8
4,852,360	-		GFF4864	0.70	+0.5
4,852,366	+		GFF4864	0.71	-0.1
4,852,374	-		GFF4864	0.73	-1.7
4,852,374	-		GFF4864	0.73	+0.9
4,852,374	-		GFF4864	0.73	+1.0
4,852,397	-		GFF4864	0.77	+0.6
4,852,400	+		GFF4864	0.77	-0.4
4,852,405	+		GFF4864	0.78	+0.1
4,852,405	-		GFF4864	0.78	-0.1
4,852,416	+		GFF4864	0.80	+1.0
4,852,417	-		GFF4864	0.80	-0.5
4,852,422	+		GFF4864	0.81	-0.7
4,852,424	-		GFF4864	0.81	+0.3
4,852,424	-		GFF4864	0.81	-1.3
4,852,430	+		GFF4864	0.82	+0.6
4,852,430	-		GFF4864	0.82	-0.2
4,852,430	-		GFF4864	0.82	-1.0
4,852,437	+		GFF4864	0.84	+0.6
4,852,438	-		GFF4864	0.84	-0.3
4,852,445	-		GFF4864	0.85	+0.3
4,852,452	+		GFF4864	0.86	-0.6
4,852,460	-		GFF4864	0.88	-0.7
4,852,460	-		GFF4864	0.88	-1.3
4,852,469	+		GFF4864	0.89	-0.5
4,852,469	+		GFF4864	0.89	+1.8
4,852,477	-				+0.5
4,852,495	-				+0.9
4,852,495	-				+1.2
4,852,497	+				+0.7
4,852,505	-				-1.3
4,852,532	+				-0.1
4,852,532	+				-1.5
4,852,533	+				+0.7
4,852,533	-				+0.0
4,852,535	+				-1.6
4,852,535	+				+0.6
4,852,540	-				-0.6
4,852,543	-				-1.8
4,852,556	+				+0.2
4,852,566	+				-0.0
4,852,570	+				-0.4
4,852,570	+				-0.2
4,852,573	-				-0.6
4,852,574	-				+1.1
4,852,574	-				+0.4
4,852,574	-				-1.5
4,852,583	+				+0.5
4,852,607	-		GFF4865	0.13	-1.3
4,852,616	-		GFF4865	0.15	-0.4
4,852,622	+		GFF4865	0.16	-1.2
4,852,622	+		GFF4865	0.16	-1.3
4,852,622	+		GFF4865	0.16	+1.0
4,852,622	+		GFF4865	0.16	+0.6
4,852,622	+		GFF4865	0.16	+0.3
4,852,622	+		GFF4865	0.16	-2.2
4,852,624	+		GFF4865	0.16	+0.7
4,852,624	+		GFF4865	0.16	+0.7
4,852,624	+		GFF4865	0.16	+2.3
4,852,624	+		GFF4865	0.16	-0.7
4,852,624	+		GFF4865	0.16	-0.9
4,852,624	+		GFF4865	0.16	+0.0
4,852,624	+		GFF4865	0.16	-1.6
4,852,628	-		GFF4865	0.17	-0.3
4,852,630	-		GFF4865	0.17	+0.9
4,852,630	-		GFF4865	0.17	+0.9
4,852,630	-		GFF4865	0.17	+1.2
4,852,630	-		GFF4865	0.17	-0.8
4,852,630	-		GFF4865	0.17	-0.6
4,852,630	-		GFF4865	0.17	+0.4
4,852,630	-		GFF4865	0.17	-1.6
4,852,632	-		GFF4865	0.17	+0.5
4,852,632	-		GFF4865	0.17	+0.7
4,852,632	-		GFF4865	0.17	+0.0
4,852,632	-		GFF4865	0.17	-0.3
4,852,639	+		GFF4865	0.18	+0.7
4,852,647	-		GFF4865	0.20	+1.3
4,852,679	+		GFF4865	0.25	-0.1
4,852,679	+		GFF4865	0.25	-0.6
4,852,687	-		GFF4865	0.26	+0.5
4,852,687	-		GFF4865	0.26	+1.1
4,852,689	+		GFF4865	0.27	-0.1
4,852,698	-		GFF4865	0.28	-2.1
4,852,704	+		GFF4865	0.29	+0.4
4,852,704	+		GFF4865	0.29	+1.7
4,852,704	+		GFF4865	0.29	+0.5
4,852,704	+		GFF4865	0.29	+0.5
4,852,704	+		GFF4865	0.29	-0.1
4,852,704	+		GFF4865	0.29	+0.8
4,852,704	+		GFF4865	0.29	-1.0
4,852,704	+		GFF4865	0.29	+0.8
4,852,704	+		GFF4865	0.29	-0.9
4,852,704	+		GFF4865	0.29	+1.0
4,852,704	+		GFF4865	0.29	-0.5
4,852,704	+		GFF4865	0.29	+1.1
4,852,704	+		GFF4865	0.29	+1.7
4,852,704	+		GFF4865	0.29	-2.3
4,852,704	+		GFF4865	0.29	-0.1
4,852,704	+		GFF4865	0.29	+1.1
4,852,708	-		GFF4865	0.30	+0.4
4,852,712	-		GFF4865	0.30	-0.1
4,852,712	-		GFF4865	0.30	+1.2
4,852,712	-		GFF4865	0.30	+0.2
4,852,712	-		GFF4865	0.30	+0.3
4,852,712	-		GFF4865	0.30	-0.2
4,852,712	-		GFF4865	0.30	+1.3
4,852,712	-		GFF4865	0.30	-0.9
4,852,712	-		GFF4865	0.30	+0.3
4,852,719	+		GFF4865	0.32	-1.5
4,852,728	+		GFF4865	0.33	+0.4
4,852,731	-		GFF4865	0.33	+0.3
4,852,731	-		GFF4865	0.33	+0.6
4,852,746	-		GFF4865	0.36	+0.8
4,852,750	-		GFF4865	0.37	-0.8
4,852,757	+		GFF4865	0.38	+0.9
4,852,757	+		GFF4865	0.38	-1.3
4,852,762	+		GFF4865	0.39	-1.3
4,852,765	-		GFF4865	0.39	-0.1
4,852,790	+		GFF4865	0.43	-1.3
4,852,793	-		GFF4865	0.44	+1.8
4,852,801	+		GFF4865	0.45	+1.7
4,852,825	+		GFF4865	0.49	+1.0
4,852,832	+		GFF4865	0.50	-0.2
4,852,837	+		GFF4865	0.51	+1.0
4,852,844	+		GFF4865	0.52	+0.6
4,852,845	-		GFF4865	0.52	-0.4
4,852,845	-		GFF4865	0.52	-1.2
4,852,868	-		GFF4865	0.56	+0.5
4,852,871	+		GFF4865	0.57	+0.2
4,852,876	+		GFF4865	0.57	-0.6
4,852,936	-		GFF4865	0.67	+0.5
4,852,949	+		GFF4865	0.69	-0.5
4,852,955	+		GFF4865	0.70	-0.9
4,852,956	+		GFF4865	0.71	-0.4
4,852,963	-		GFF4865	0.72	-1.8
4,852,964	-		GFF4865	0.72	+0.7
4,852,966	+		GFF4865	0.72	+0.1
4,852,971	+		GFF4865	0.73	+1.5
4,852,987	-		GFF4865	0.76	+0.5
4,853,033	+		GFF4865	0.83	+0.2
4,853,033	+		GFF4865	0.83	-0.9
4,853,033	+		GFF4865	0.83	-2.2
4,853,033	+		GFF4865	0.83	+0.1
4,853,041	-		GFF4865	0.85	-0.1
4,853,041	-		GFF4865	0.85	-0.0
4,853,041	-		GFF4865	0.85	+0.1
4,853,041	-		GFF4865	0.85	-0.7
4,853,049	-		GFF4865	0.86	-0.3
4,853,056	-		GFF4865	0.87	-2.0
4,853,086	-				+0.2
4,853,088	+				-0.8
4,853,091	-				-0.0
4,853,091	-				+0.5
4,853,102	-				+0.8
4,853,114	+				+1.1
4,853,128	+				+0.7
4,853,133	+				-0.4
4,853,150	+				+0.3
4,853,166	+				-0.6
4,853,187	+				+0.8
4,853,191	+				-0.0
4,853,198	+				-0.1
4,853,206	+				+0.1
4,853,229	+				-1.4
4,853,229	+				+0.4
4,853,231	+				-0.0
4,853,237	-				-0.3
4,853,239	+				-0.6
4,853,239	+				-0.5
4,853,247	-				+0.0
4,853,247	-				+1.0
4,853,247	-				-0.2
4,853,253	-				+0.4
4,853,253	-				+0.8
4,853,255	+				-0.3
4,853,255	+				+1.5
4,853,260	+				-2.2
4,853,263	-				-1.1
4,853,263	-				+0.3
4,853,263	-				+0.4
4,853,263	-				-0.9
4,853,269	+				-0.6
4,853,269	+				+1.5
4,853,275	-				+0.9
4,853,285	+				+1.1
4,853,301	+				+0.7
4,853,301	+				+0.2
4,853,309	-				+0.4
4,853,314	-				+0.2
4,853,314	-				-1.8
4,853,314	-				+1.0
4,853,314	-				-1.3
4,853,314	-				-0.8
4,853,314	-				+0.2
4,853,554	+				-0.1
4,853,555	+				+0.2
4,853,555	+				+0.7
4,853,555	+				-0.2
4,853,583	+				-1.9
4,853,588	+				-0.9
4,853,617	-				+1.4
4,853,633	+				+0.8
4,853,633	+				-1.5
4,853,633	+				-0.0
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