Strain Fitness in Sphingobium sp. HT1-2 around GFF4858

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,843,167	-		GFF4856	0.69	-0.6
4,843,199	-		GFF4856	0.73	-0.1
4,843,199	-		GFF4856	0.73	+1.2
4,843,199	-		GFF4856	0.73	-1.1
4,843,225	+		GFF4856	0.77	-0.2
4,843,225	+		GFF4856	0.77	+1.5
4,843,225	+		GFF4856	0.77	+1.1
4,843,225	+		GFF4856	0.77	+0.1
4,843,225	+		GFF4856	0.77	+0.4
4,843,225	+		GFF4856	0.77	-1.2
4,843,225	+		GFF4856	0.77	-0.3
4,843,225	+		GFF4856	0.77	-0.9
4,843,225	+		GFF4856	0.77	-0.6
4,843,225	+		GFF4856	0.77	-0.2
4,843,225	+		GFF4856	0.77	-0.5
4,843,225	+		GFF4856	0.77	+1.2
4,843,225	+		GFF4856	0.77	-0.2
4,843,225	+		GFF4856	0.77	-0.0
4,843,225	+		GFF4856	0.77	+0.6
4,843,225	+		GFF4856	0.77	-0.1
4,843,225	+		GFF4856	0.77	-0.8
4,843,225	+		GFF4856	0.77	-0.7
4,843,225	+		GFF4856	0.77	-0.2
4,843,225	+		GFF4856	0.77	-0.1
4,843,225	+		GFF4856	0.77	-0.3
4,843,225	+		GFF4856	0.77	-0.5
4,843,225	+		GFF4856	0.77	-0.5
4,843,225	+		GFF4856	0.77	+0.4
4,843,225	+		GFF4856	0.77	-0.0
4,843,225	+		GFF4856	0.77	+1.2
4,843,225	+		GFF4856	0.77	+0.5
4,843,225	+		GFF4856	0.77	-0.0
4,843,233	-		GFF4856	0.78	+1.0
4,843,233	-		GFF4856	0.78	+0.2
4,843,233	-		GFF4856	0.78	+1.1
4,843,233	-		GFF4856	0.78	+0.7
4,843,233	-		GFF4856	0.78	-1.5
4,843,233	-		GFF4856	0.78	-0.5
4,843,233	-		GFF4856	0.78	+1.5
4,843,233	-		GFF4856	0.78	-0.5
4,843,233	-		GFF4856	0.78	+1.3
4,843,233	-		GFF4856	0.78	-0.4
4,843,233	-		GFF4856	0.78	+0.8
4,843,233	-		GFF4856	0.78	+0.7
4,843,233	-		GFF4856	0.78	+1.4
4,843,233	-		GFF4856	0.78	+0.5
4,843,233	-		GFF4856	0.78	+0.8
4,843,233	-		GFF4856	0.78	+1.3
4,843,233	-		GFF4856	0.78	+0.2
4,843,233	-		GFF4856	0.78	+0.9
4,843,233	-		GFF4856	0.78	+0.8
4,843,233	-		GFF4856	0.78	+1.4
4,843,233	-		GFF4856	0.78	-0.0
4,843,233	-		GFF4856	0.78	+0.1
4,843,233	-		GFF4856	0.78	+0.0
4,843,233	-		GFF4856	0.78	-0.9
4,843,233	-		GFF4856	0.78	-0.2
4,843,233	-		GFF4856	0.78	+0.2
4,843,233	-		GFF4856	0.78	+0.1
4,843,233	-		GFF4856	0.78	-0.3
4,843,233	-		GFF4856	0.78	+1.0
4,843,233	-		GFF4856	0.78	-0.1
4,843,233	-		GFF4856	0.78	-0.8
4,843,233	-		GFF4856	0.78	+0.7
4,843,235	+		GFF4856	0.78	-0.4
4,843,235	+		GFF4856	0.78	+1.1
4,843,244	+		GFF4856	0.80	+0.7
4,843,250	-		GFF4856	0.80	+1.5
4,843,282	+		GFF4856	0.85	+0.6
4,843,302	+		GFF4856	0.87	-0.1
4,843,305	-		GFF4856	0.88	-0.0
4,843,310	-		GFF4856	0.89	-0.4
4,843,325	+				+0.5
4,843,325	+				-0.4
4,843,325	+				+0.4
4,843,325	+				+1.7
4,843,325	+				-1.7
4,843,325	+				+0.2
4,843,325	+				+0.7
4,843,325	+				+0.3
4,843,325	+				+0.6
4,843,333	-				+0.6
4,843,333	-				-1.1
4,843,333	-				+0.4
4,843,333	-				+1.9
4,843,333	-				+0.8
4,843,333	-				+0.8
4,843,333	-				+0.9
4,843,333	-				+1.0
4,843,333	-				+1.3
4,843,333	-				+2.0
4,843,333	-				-0.2
4,843,333	-				+1.0
4,843,338	+				+0.6
4,843,338	+				-0.0
4,843,340	-				+0.4
4,843,340	-				+0.5
4,843,346	-				-0.0
4,843,369	+				-0.2
4,843,372	-				+1.3
4,843,377	-				-2.5
4,843,377	-				-0.1
4,843,390	-				+0.9
4,843,413	-				-0.3
4,843,453	+				+1.0
4,843,455	+				+1.3
4,843,455	+				-0.0
4,843,455	+				+0.4
4,843,463	-				-2.2
4,843,463	-				+0.6
4,843,471	+				-0.3
4,843,471	+				+1.0
4,843,479	-				-0.2
4,843,479	-				+0.3
4,843,489	-				-0.5
4,843,492	+				+0.2
4,843,507	+				+0.0
4,843,567	+				+1.3
4,843,567	+				-0.1
4,843,567	+				-1.2
4,843,575	-		GFF4857	0.10	-0.4
4,843,575	-		GFF4857	0.10	+1.3
4,843,583	+		GFF4857	0.12	+0.2
4,843,595	+		GFF4857	0.14	-0.9
4,843,603	-		GFF4857	0.16	-1.5
4,843,627	+		GFF4857	0.21	+1.0
4,843,634	-		GFF4857	0.22	-0.4
4,843,640	+		GFF4857	0.24	-1.2
4,843,640	-		GFF4857	0.24	+0.9
4,843,681	+		GFF4857	0.32	-0.2
4,843,687	-		GFF4857	0.33	+0.2
4,843,689	-		GFF4857	0.34	-0.8
4,843,715	+		GFF4857	0.39	+0.9
4,843,715	+		GFF4857	0.39	-0.4
4,843,740	+		GFF4857	0.44	+0.7
4,843,770	-		GFF4857	0.50	+0.2
4,843,773	+		GFF4857	0.51	+0.1
4,843,778	+		GFF4857	0.52	-1.0
4,843,778	+		GFF4857	0.52	-0.1
4,843,780	+		GFF4857	0.52	-0.3
4,843,781	-		GFF4857	0.53	+0.2
4,843,783	-		GFF4857	0.53	+0.5
4,843,792	+		GFF4857	0.55	-1.7
4,843,796	-		GFF4857	0.56	+0.3
4,843,796	-		GFF4857	0.56	-1.2
4,843,799	+		GFF4857	0.56	+0.7
4,843,799	+		GFF4857	0.56	+1.1
4,843,799	+		GFF4857	0.56	-0.7
4,843,799	+		GFF4857	0.56	+0.5
4,843,799	+		GFF4857	0.56	+0.6
4,843,807	-		GFF4857	0.58	-1.2
4,843,807	-		GFF4857	0.58	+0.2
4,843,807	-		GFF4857	0.58	-0.6
4,843,807	-		GFF4857	0.58	-0.2
4,843,807	-		GFF4857	0.58	-1.0
4,843,828	+		GFF4857	0.62	-1.0
4,843,828	+		GFF4857	0.62	-0.6
4,843,828	+		GFF4857	0.62	-0.2
4,843,836	-		GFF4857	0.64	-0.3
4,843,836	-		GFF4857	0.64	-0.3
4,843,836	-		GFF4857	0.64	-1.3
4,843,843	-		GFF4857	0.65	+0.8
4,843,850	+		GFF4857	0.67	-1.3
4,843,850	+		GFF4857	0.67	+0.5
4,843,855	-		GFF4857	0.68	-0.6
4,843,858	-		GFF4857	0.69	+0.1
4,843,863	+		GFF4857	0.70	-0.7
4,843,863	+		GFF4857	0.70	+1.4
4,843,897	+		GFF4857	0.77	+1.1
4,843,898	+		GFF4857	0.77	+0.5
4,843,898	+		GFF4857	0.77	+0.1
4,843,898	+		GFF4857	0.77	+0.3
4,843,898	+		GFF4857	0.77	-0.2
4,843,899	-		GFF4857	0.77	-0.0
4,843,905	-		GFF4857	0.78	-0.7
4,843,905	-		GFF4857	0.78	-0.8
4,843,905	-		GFF4857	0.78	-0.4
4,843,906	-		GFF4857	0.78	+0.7
4,843,906	-		GFF4857	0.78	+0.3
4,843,925	+		GFF4857	0.82	-0.2
4,843,932	+		GFF4857	0.84	+0.9
4,843,935	+		GFF4857	0.84	+1.1
4,843,935	+		GFF4857	0.84	-0.8
4,843,935	+		GFF4857	0.84	+0.4
4,843,935	+		GFF4857	0.84	+0.1
4,843,935	+		GFF4857	0.84	+0.3
4,843,935	+		GFF4857	0.84	-1.3
4,843,935	+		GFF4857	0.84	-0.7
4,843,935	+		GFF4857	0.84	-0.0
4,843,943	-		GFF4857	0.86	-0.2
4,843,943	-		GFF4857	0.86	+0.3
4,844,004	+				+1.0
4,844,007	-				-0.5
4,844,012	-				+0.5
4,844,013	-				-0.6
4,844,017	+				-1.2
4,844,020	-				-0.8
4,844,028	-				+1.1
4,844,046	+				+0.6
4,844,046	-				-0.3
4,844,081	-				+1.1
4,844,093	-				+0.8
4,844,095	+				-0.9
4,844,100	+				+0.9
4,844,111	-				-0.1
4,844,162	+				-2.3
4,844,175	+				+0.2
4,844,177	+				+0.3
4,844,189	-				-0.6
4,844,195	-				-1.0
4,844,214	-		GFF4858	0.12	-0.6
4,844,226	+		GFF4858	0.15	+0.9
4,844,226	+		GFF4858	0.15	-0.3
4,844,234	-		GFF4858	0.17	-0.9
4,844,236	+		GFF4858	0.17	+1.2
4,844,239	-		GFF4858	0.18	-0.7
4,844,239	-		GFF4858	0.18	-0.7
4,844,239	-		GFF4858	0.18	-0.1
4,844,263	+		GFF4858	0.24	+0.9
4,844,270	+		GFF4858	0.25	-0.0
4,844,278	-		GFF4858	0.27	+0.3
4,844,278	-		GFF4858	0.27	-1.3
4,844,284	+		GFF4858	0.29	+0.8
4,844,284	+		GFF4858	0.29	+1.4
4,844,292	-		GFF4858	0.31	-0.2
4,844,313	-		GFF4858	0.36	-0.5
4,844,327	-		GFF4858	0.39	-0.4
4,844,330	+		GFF4858	0.40	+0.2
4,844,330	+		GFF4858	0.40	+1.2
4,844,330	+		GFF4858	0.40	-0.5
4,844,337	+		GFF4858	0.42	-0.2
4,844,338	-		GFF4858	0.42	+0.2
4,844,385	+		GFF4858	0.53	+0.1
4,844,393	-		GFF4858	0.55	-0.1
4,844,403	-		GFF4858	0.57	-0.6
4,844,430	+		GFF4858	0.64	-0.5
4,844,438	-		GFF4858	0.66	-0.0
4,844,463	-		GFF4858	0.72	-1.6
4,844,473	+		GFF4858	0.74	+0.4
4,844,507	-		GFF4858	0.83	-1.3
4,844,509	+		GFF4858	0.83	+0.2
4,844,509	+		GFF4858	0.83	-0.0
4,844,509	+		GFF4858	0.83	+0.1
4,844,509	+		GFF4858	0.83	+0.2
4,844,517	-		GFF4858	0.85	+0.1
4,844,517	-		GFF4858	0.85	-2.5
4,844,517	-		GFF4858	0.85	+0.8
4,844,535	+		GFF4858	0.89	+0.2
4,844,540	+				+0.2
4,844,540	+				+0.2
4,844,540	+				-1.8
4,844,548	-				+0.4
4,844,548	-				+0.7
4,844,576	-				-1.5
4,844,631	+				-0.7
4,844,636	+				-1.0
4,844,636	+				+1.5
4,844,636	+				-0.3
4,844,636	+				+1.1
4,844,636	+				+0.7
4,844,636	+				-0.0
4,844,636	+				+0.4
4,844,636	+				+1.3
4,844,636	+				+0.2
4,844,636	+				+0.9
4,844,636	+				+0.6
4,844,638	+				+0.7
4,844,644	-				-1.5
4,844,644	-				-1.6
4,844,644	-				-1.3
4,844,644	-				+0.3
4,844,644	-				-0.2
4,844,650	+				+1.0
4,844,657	+				-0.2
4,844,672	-				-1.3
4,844,683	+				+0.1
4,844,683	+				+0.6
4,844,716	-				-2.1
4,844,718	-				-2.1
4,844,721	+				+0.5
4,844,750	-				+0.8
4,844,752	-				-0.6
4,844,773	-				+1.0
4,844,773	-				+0.2
4,844,782	-				+0.5
4,844,787	+				+1.6
4,844,831	+				-0.8
4,844,851	-				-0.0
4,844,871	-				-0.1
4,844,874	+				-0.3
4,844,874	+				+0.9
4,844,882	-				+0.7
4,844,931	-				-0.3
4,844,936	-				+0.3
4,844,941	-				-0.7
4,844,952	+				+0.2
4,844,958	-				-1.6
4,844,958	-				+0.2
4,844,958	-				-0.3
4,844,958	-				+0.5
4,844,958	-				-0.3
4,844,959	+				-1.5
4,844,959	+				-1.0
4,844,975	+				+0.8
4,844,976	+				+1.0
4,844,978	-				+2.0
4,844,978	-				-0.0
4,844,982	+				+2.3
4,844,982	+				+0.5
4,844,982	+				-0.3
4,844,982	+				-0.2
4,844,982	+				+0.2
4,844,982	+				+1.5
4,844,982	+				+1.8
4,844,982	+				+0.2
4,844,982	+				-0.0
4,844,982	+				-1.3
4,844,982	+				-0.8
4,844,982	+				-1.1
4,844,982	+				+1.5
4,844,982	+				+0.1
4,844,982	+				+0.1
4,844,982	+				-0.1
4,844,982	+				+2.0
4,844,982	+				-0.1
4,844,982	+				-0.1
4,844,982	+				+0.3
4,844,982	+				-0.7
4,844,982	+				+0.8
4,844,982	+				-0.3
4,844,982	+				-0.3
4,844,982	+				-0.8
4,844,982	+				-1.3
4,844,982	+				-0.8
4,844,982	+				-0.0
4,844,982	+				+1.9
4,844,982	+				+1.2
4,844,982	+				+0.6
4,844,982	+				+0.4
4,844,982	+				-0.7
4,844,982	+				+0.4
4,844,982	+				+0.3
4,844,982	+				+0.4
4,844,982	+				+0.4
4,844,982	+				-0.2
4,844,982	+				+0.1
4,844,982	+				-0.2
4,844,983	-				+0.5
4,844,984	-				+0.8
4,844,990	-				+0.3
4,844,990	-				-1.5
4,844,990	-				-1.6
4,844,990	-				-0.1
4,844,990	-				+0.2
4,844,990	-				-0.5
4,844,990	-				-0.5
4,844,990	-				+1.2
4,844,990	-				+1.5
4,844,990	-				+0.7
4,844,990	-				+0.7
4,844,990	-				-0.3
4,844,990	-				+0.6
4,844,990	-				-0.6
4,844,990	-				-0.5
4,844,990	-				+0.3
4,844,990	-				+0.7
4,844,990	-				+0.0
4,844,990	-				+0.5
4,844,990	-				+0.0
4,844,990	-				+0.6
4,844,990	-				-1.8
4,844,990	-				+1.0
4,844,990	-				+1.8
4,844,990	-				-1.2
4,844,990	-				+0.3
4,844,990	-				-0.3
4,844,990	-				-1.9
4,844,990	-				+0.7
4,844,990	-				-0.0
4,844,990	-				-2.7
4,844,990	-				-0.2
4,844,990	-				-0.5
4,844,990	-				-0.3
4,844,990	-				+1.4
4,844,990	-				-1.1
4,844,990	-				+1.0
4,844,990	-				+0.3
4,844,990	-				+1.1
4,844,990	-				+0.3
4,844,990	-				+0.5
4,844,990	-				+0.5
4,844,990	-				+0.1
4,844,990	-				-0.4
4,844,990	-				+0.3
4,844,990	-				+1.3
4,844,990	-				-0.2
4,844,990	-				-0.8
4,844,990	-				-0.7
4,844,990	-				+0.7
4,844,992	+				+0.6
4,844,992	+				+1.1
4,845,000	-				+0.2
4,845,000	-				-1.6
4,845,000	-				-0.3
4,845,000	-				-0.7
4,845,000	-				+1.2
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