Strain Fitness in Sphingobium sp. HT1-2 around GFF4777

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,770,481	+				-0.4
4,770,481	+				-0.2
4,770,912	-				+0.3
4,770,926	+				-0.8
4,770,933	+				-1.0
4,770,941	-				-0.2
4,770,976	-				-0.8
4,770,981	-				-0.7
4,770,986	+				-0.6
4,770,989	-				-2.2
4,770,989	-				-0.5
4,771,026	+				-0.2
4,771,051	+		GFF4777	0.11	-1.7
4,771,056	+		GFF4777	0.12	-0.3
4,771,058	+		GFF4777	0.12	-0.8
4,771,058	+		GFF4777	0.12	-2.0
4,771,060	-		GFF4777	0.12	+0.2
4,771,066	-		GFF4777	0.13	-0.5
4,771,067	-		GFF4777	0.13	+0.4
4,771,071	+		GFF4777	0.13	-1.1
4,771,087	-		GFF4777	0.15	-0.0
4,771,097	-		GFF4777	0.16	-0.5
4,771,097	-		GFF4777	0.16	-1.9
4,771,100	+		GFF4777	0.17	-1.4
4,771,106	-		GFF4777	0.17	-1.8
4,771,113	+		GFF4777	0.18	-1.9
4,771,121	+		GFF4777	0.19	+0.2
4,771,121	+		GFF4777	0.19	-1.7
4,771,123	+		GFF4777	0.19	+0.1
4,771,129	-		GFF4777	0.20	-0.4
4,771,157	+		GFF4777	0.23	-1.5
4,771,157	+		GFF4777	0.23	-2.6
4,771,157	+		GFF4777	0.23	-0.7
4,771,157	+		GFF4777	0.23	-1.1
4,771,157	+		GFF4777	0.23	-1.6
4,771,157	+		GFF4777	0.23	-1.5
4,771,157	+		GFF4777	0.23	-0.4
4,771,157	+		GFF4777	0.23	+0.6
4,771,157	+		GFF4777	0.23	-2.5
4,771,157	+		GFF4777	0.23	-0.7
4,771,157	+		GFF4777	0.23	-0.4
4,771,157	+		GFF4777	0.23	-1.2
4,771,165	-		GFF4777	0.24	+0.4
4,771,165	-		GFF4777	0.24	-1.5
4,771,165	-		GFF4777	0.24	-0.7
4,771,165	-		GFF4777	0.24	-0.4
4,771,165	-		GFF4777	0.24	-0.3
4,771,165	-		GFF4777	0.24	-1.6
4,771,165	-		GFF4777	0.24	-2.4
4,771,165	-		GFF4777	0.24	-0.9
4,771,165	-		GFF4777	0.24	-1.5
4,771,171	+		GFF4777	0.24	-1.5
4,771,179	-		GFF4777	0.25	-0.3
4,771,179	-		GFF4777	0.25	-0.5
4,771,179	-		GFF4777	0.25	-0.6
4,771,201	+		GFF4777	0.28	-1.3
4,771,214	+		GFF4777	0.29	-0.0
4,771,219	+		GFF4777	0.30	-0.1
4,771,219	+		GFF4777	0.30	-1.7
4,771,227	+		GFF4777	0.31	-0.5
4,771,227	-		GFF4777	0.31	-1.0
4,771,227	-		GFF4777	0.31	-1.7
4,771,227	-		GFF4777	0.31	+0.1
4,771,235	-		GFF4777	0.32	-0.6
4,771,235	-		GFF4777	0.32	-0.5
4,771,237	+		GFF4777	0.32	-0.1
4,771,237	+		GFF4777	0.32	-0.8
4,771,254	-		GFF4777	0.34	-2.4
4,771,254	-		GFF4777	0.34	-0.3
4,771,284	-		GFF4777	0.37	-0.1
4,771,296	+		GFF4777	0.38	-0.9
4,771,304	-		GFF4777	0.39	-2.2
4,771,304	-		GFF4777	0.39	-2.3
4,771,313	+		GFF4777	0.40	-1.5
4,771,321	-		GFF4777	0.41	-1.8
4,771,321	-		GFF4777	0.41	-2.7
4,771,322	-		GFF4777	0.41	-0.3
4,771,328	+		GFF4777	0.42	+0.3
4,771,336	-		GFF4777	0.43	-0.1
4,771,336	-		GFF4777	0.43	-0.6
4,771,337	-		GFF4777	0.43	+0.5
4,771,351	+		GFF4777	0.44	-1.3
4,771,359	-		GFF4777	0.45	-0.9
4,771,359	-		GFF4777	0.45	-1.0
4,771,407	+		GFF4777	0.51	-0.5
4,771,407	-		GFF4777	0.51	-1.2
4,771,407	-		GFF4777	0.51	-3.1
4,771,409	+		GFF4777	0.51	-0.2
4,771,409	+		GFF4777	0.51	-1.4
4,771,415	-		GFF4777	0.52	-1.3
4,771,417	-		GFF4777	0.52	-2.0
4,771,417	-		GFF4777	0.52	-1.6
4,771,417	-		GFF4777	0.52	+0.3
4,771,417	-		GFF4777	0.52	-1.3
4,771,417	-		GFF4777	0.52	-2.3
4,771,424	-		GFF4777	0.53	-1.6
4,771,466	+		GFF4777	0.57	-3.0
4,771,484	-		GFF4777	0.59	-0.8
4,771,494	+		GFF4777	0.60	-0.6
4,771,499	+		GFF4777	0.61	-1.3
4,771,502	-		GFF4777	0.61	-2.9
4,771,504	+		GFF4777	0.61	-0.6
4,771,512	-		GFF4777	0.62	-1.5
4,771,530	+		GFF4777	0.64	-0.9
4,771,538	-		GFF4777	0.65	-1.7
4,771,547	+		GFF4777	0.66	-2.5
4,771,549	-		GFF4777	0.66	-0.7
4,771,556	-		GFF4777	0.67	+1.0
4,771,564	+		GFF4777	0.68	-1.1
4,771,564	+		GFF4777	0.68	-1.7
4,771,564	+		GFF4777	0.68	-0.7
4,771,572	-		GFF4777	0.69	-1.7
4,771,572	-		GFF4777	0.69	-0.3
4,771,588	+		GFF4777	0.71	-0.8
4,771,588	+		GFF4777	0.71	+0.5
4,771,588	+		GFF4777	0.71	-1.3
4,771,588	+		GFF4777	0.71	-0.1
4,771,588	+		GFF4777	0.71	-0.8
4,771,588	+		GFF4777	0.71	-1.1
4,771,591	-		GFF4777	0.71	+0.9
4,771,593	+		GFF4777	0.71	-2.5
4,771,593	+		GFF4777	0.71	-1.5
4,771,593	+		GFF4777	0.71	-1.5
4,771,596	-		GFF4777	0.72	+0.6
4,771,596	-		GFF4777	0.72	-0.8
4,771,596	-		GFF4777	0.72	-1.8
4,771,596	-		GFF4777	0.72	-1.5
4,771,596	-		GFF4777	0.72	+0.5
4,771,596	-		GFF4777	0.72	-0.6
4,771,601	-		GFF4777	0.72	+0.7
4,771,601	-		GFF4777	0.72	-1.3
4,771,622	-		GFF4777	0.75	-1.8
4,771,631	-		GFF4777	0.76	-0.9
4,771,706	-		GFF4777	0.84	-1.2
4,771,734	+		GFF4777	0.87	-1.8
4,771,738	+		GFF4777	0.87	-1.2
4,771,767	+				-0.8
4,771,781	+				-0.8
4,771,785	-				-0.6
4,771,788	-				-1.7
4,771,816	+				-1.0
4,771,829	+				-0.9
4,771,833	-				-0.3
4,771,878	-				-0.0
4,771,900	-				-2.2
4,771,904	+				-0.2
4,771,935	+				-0.5
4,771,939	+				-1.0
4,771,945	+				-0.5
4,771,951	+				-1.5
4,771,954	-				-1.3
4,771,959	-				-2.0
4,771,964	+				-1.0
4,771,971	+				+0.1
4,772,025	+		GFF4778	0.13	+0.2
4,772,029	+		GFF4778	0.14	-0.1
4,772,033	-		GFF4778	0.14	-0.4
4,772,037	-		GFF4778	0.14	-0.3
4,772,044	+		GFF4778	0.15	-0.1
4,772,044	+		GFF4778	0.15	-1.7
4,772,044	+		GFF4778	0.15	-1.7
4,772,044	+		GFF4778	0.15	-1.1
4,772,052	-		GFF4778	0.16	-0.6
4,772,052	-		GFF4778	0.16	-0.1
4,772,055	+		GFF4778	0.16	-2.0
4,772,085	+		GFF4778	0.19	-0.9
4,772,103	+		GFF4778	0.21	-0.4
4,772,107	+		GFF4778	0.21	-0.9
4,772,129	-		GFF4778	0.23	-1.5
4,772,131	+		GFF4778	0.23	-1.1
4,772,160	+		GFF4778	0.26	+0.6
4,772,160	-		GFF4778	0.26	+0.6
4,772,168	-		GFF4778	0.27	-0.1
4,772,169	-		GFF4778	0.27	+0.8
4,772,175	+		GFF4778	0.27	-1.8
4,772,175	+		GFF4778	0.27	-1.0
4,772,175	+		GFF4778	0.27	-0.8
4,772,175	+		GFF4778	0.27	-0.2
4,772,183	-		GFF4778	0.28	-1.2
4,772,194	+		GFF4778	0.29	-2.7
4,772,194	+		GFF4778	0.29	-2.3
4,772,194	+		GFF4778	0.29	-1.4
4,772,194	+		GFF4778	0.29	-0.6
4,772,198	-		GFF4778	0.29	-1.9
4,772,201	+		GFF4778	0.30	+0.3
4,772,202	-		GFF4778	0.30	-1.4
4,772,202	-		GFF4778	0.30	-0.9
4,772,212	-		GFF4778	0.31	-1.5
4,772,228	+		GFF4778	0.32	+0.5
4,772,235	-		GFF4778	0.33	-1.3
4,772,247	+		GFF4778	0.34	-0.3
4,772,247	+		GFF4778	0.34	+0.1
4,772,260	+		GFF4778	0.35	-3.2
4,772,265	-		GFF4778	0.36	+0.0
4,772,274	+		GFF4778	0.36	-0.6
4,772,282	+		GFF4778	0.37	-1.5
4,772,282	-		GFF4778	0.37	-0.5
4,772,284	+		GFF4778	0.37	+0.1
4,772,284	-		GFF4778	0.37	+1.3
4,772,290	-		GFF4778	0.38	-0.3
4,772,290	-		GFF4778	0.38	+0.6
4,772,292	-		GFF4778	0.38	-0.1
4,772,292	-		GFF4778	0.38	-2.3
4,772,292	-		GFF4778	0.38	-0.3
4,772,292	-		GFF4778	0.38	-1.9
4,772,334	-		GFF4778	0.42	-0.6
4,772,364	+		GFF4778	0.45	-0.5
4,772,378	-		GFF4778	0.46	-0.1
4,772,378	-		GFF4778	0.46	-2.2
4,772,392	-		GFF4778	0.47	-2.6
4,772,401	-		GFF4778	0.48	-1.0
4,772,409	+		GFF4778	0.49	+0.5
4,772,413	-		GFF4778	0.49	+0.1
4,772,417	-		GFF4778	0.50	-1.2
4,772,419	+		GFF4778	0.50	-0.3
4,772,427	-		GFF4778	0.51	+0.3
4,772,467	+		GFF4778	0.54	-0.7
4,772,467	+		GFF4778	0.54	+1.2
4,772,467	+		GFF4778	0.54	-0.1
4,772,473	-		GFF4778	0.55	-2.3
4,772,473	-		GFF4778	0.55	-2.3
4,772,473	-		GFF4778	0.55	-2.0
4,772,475	-		GFF4778	0.55	-0.8
4,772,475	-		GFF4778	0.55	-1.4
4,772,488	+		GFF4778	0.56	+0.1
4,772,492	+		GFF4778	0.57	+0.4
4,772,492	+		GFF4778	0.57	-2.3
4,772,493	+		GFF4778	0.57	-1.3
4,772,493	+		GFF4778	0.57	-0.4
4,772,500	-		GFF4778	0.57	-0.9
4,772,500	-		GFF4778	0.57	-1.1
4,772,501	-		GFF4778	0.57	-0.1
4,772,501	-		GFF4778	0.57	+0.0
4,772,501	-		GFF4778	0.57	-1.1
4,772,540	-		GFF4778	0.61	-2.3
4,772,545	+		GFF4778	0.61	-1.3
4,772,545	+		GFF4778	0.61	-0.3
4,772,553	+		GFF4778	0.62	-2.6
4,772,555	-		GFF4778	0.62	-0.4
4,772,561	-		GFF4778	0.63	-1.7
4,772,566	+		GFF4778	0.63	-2.0
4,772,572	+		GFF4778	0.64	-0.3
4,772,574	-		GFF4778	0.64	-0.4
4,772,594	+		GFF4778	0.66	+0.7
4,772,597	-		GFF4778	0.66	-1.4
4,772,599	+		GFF4778	0.66	-1.3
4,772,627	+		GFF4778	0.69	+0.7
4,772,640	-		GFF4778	0.70	-1.4
4,772,705	+		GFF4778	0.76	-0.7
4,772,705	-		GFF4778	0.76	-1.8
4,772,722	+		GFF4778	0.78	-1.5
4,772,737	+		GFF4778	0.79	-0.1
4,772,745	-		GFF4778	0.80	-1.5
4,772,758	-		GFF4778	0.81	-0.7
4,772,811	-		GFF4778	0.86	+0.1
4,772,813	+		GFF4778	0.86	-1.2
4,772,836	+		GFF4778	0.88	-2.1
4,772,844	-		GFF4778	0.89	+0.3
4,772,844	-		GFF4778	0.89	-0.5