Strain Fitness in Sphingobium sp. HT1-2 around GFF4715

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,716,439	+		GFF4714	0.46	-2.1
4,716,439	+		GFF4714	0.46	-0.1
4,716,446	+		GFF4714	0.47	-1.6
4,716,446	+		GFF4714	0.47	-0.3
4,716,447	-		GFF4714	0.47	-0.4
4,716,459	+		GFF4714	0.47	+1.5
4,716,462	+		GFF4714	0.47	-0.0
4,716,470	-		GFF4714	0.48	+0.6
4,716,480	+		GFF4714	0.48	-0.4
4,716,549	-		GFF4714	0.52	+0.1
4,716,549	-		GFF4714	0.52	-1.8
4,716,561	-		GFF4714	0.53	-0.9
4,716,563	+		GFF4714	0.53	-0.4
4,716,563	+		GFF4714	0.53	+0.9
4,716,571	-		GFF4714	0.54	+0.8
4,716,573	-		GFF4714	0.54	+0.3
4,716,580	+		GFF4714	0.54	-0.6
4,716,604	-		GFF4714	0.55	+0.8
4,716,636	+		GFF4714	0.57	+0.9
4,716,643	+		GFF4714	0.58	-2.1
4,716,684	-		GFF4714	0.60	-0.3
4,716,695	+		GFF4714	0.61	+0.4
4,716,695	+		GFF4714	0.61	-1.0
4,716,695	+		GFF4714	0.61	+1.4
4,716,703	-		GFF4714	0.61	+1.5
4,716,718	+		GFF4714	0.62	+0.3
4,716,718	+		GFF4714	0.62	+0.9
4,716,718	+		GFF4714	0.62	+1.0
4,716,726	-		GFF4714	0.62	+0.2
4,716,726	-		GFF4714	0.62	-0.2
4,716,726	-		GFF4714	0.62	-1.8
4,716,726	-		GFF4714	0.62	+0.8
4,716,767	+		GFF4714	0.65	+0.6
4,716,772	+		GFF4714	0.65	+0.4
4,716,785	-		GFF4714	0.66	+1.4
4,716,786	+		GFF4714	0.66	-0.2
4,716,786	+		GFF4714	0.66	-0.4
4,716,789	-		GFF4714	0.66	-0.4
4,716,794	-		GFF4714	0.66	-0.2
4,716,795	-		GFF4714	0.66	-1.4
4,716,897	+		GFF4714	0.72	+0.6
4,716,905	-		GFF4714	0.72	+0.6
4,716,933	+		GFF4714	0.74	-0.9
4,716,938	+		GFF4714	0.74	-0.8
4,716,941	-		GFF4714	0.75	-0.6
4,716,941	-		GFF4714	0.75	+0.1
4,716,946	-		GFF4714	0.75	+0.5
4,716,947	+		GFF4714	0.75	+0.9
4,716,947	+		GFF4714	0.75	-1.2
4,716,947	+		GFF4714	0.75	+0.3
4,716,947	+		GFF4714	0.75	-0.2
4,716,955	-		GFF4714	0.75	+0.0
4,716,955	-		GFF4714	0.75	+1.0
4,716,955	-		GFF4714	0.75	-2.3
4,716,955	-		GFF4714	0.75	-1.4
4,716,955	-		GFF4714	0.75	-0.2
4,716,967	-		GFF4714	0.76	-0.9
4,716,971	+		GFF4714	0.76	+0.4
4,716,978	+		GFF4714	0.77	+0.1
4,716,991	+		GFF4714	0.77	+0.2
4,716,991	+		GFF4714	0.77	+0.9
4,716,992	+		GFF4714	0.77	+0.3
4,717,000	-		GFF4714	0.78	+0.7
4,717,000	-		GFF4714	0.78	-1.4
4,717,001	-		GFF4714	0.78	+0.7
4,717,004	+		GFF4714	0.78	+0.6
4,717,004	+		GFF4714	0.78	+0.4
4,717,007	-		GFF4714	0.78	+0.3
4,717,062	-		GFF4714	0.81	+0.7
4,717,127	+		GFF4714	0.85	+1.0
4,717,183	+		GFF4714	0.88	-1.4
4,717,183	+		GFF4714	0.88	+0.2
4,717,183	+		GFF4714	0.88	+0.6
4,717,184	+		GFF4714	0.88	+0.4
4,717,184	+		GFF4714	0.88	+1.9
4,717,191	-		GFF4714	0.89	-1.5
4,717,191	-		GFF4714	0.89	+0.1
4,717,191	-		GFF4714	0.89	+0.1
4,717,191	-		GFF4714	0.89	+0.0
4,717,191	-		GFF4714	0.89	-0.7
4,717,192	-		GFF4714	0.89	-1.3
4,717,192	-		GFF4714	0.89	-1.1
4,717,192	-		GFF4714	0.89	+0.1
4,717,222	+				-0.3
4,717,222	+				+0.9
4,717,222	+				+0.4
4,717,222	+				-0.1
4,717,228	+				-0.6
4,717,230	-				+0.7
4,717,268	+				+0.3
4,717,283	+				-0.5
4,717,292	+				+0.7
4,717,297	+				-0.6
4,717,297	+				-1.0
4,717,297	+				+0.9
4,717,297	+				-1.1
4,717,342	-				-0.3
4,717,363	-				+0.7
4,717,363	-				+0.1
4,717,370	-				-0.4
4,717,370	-				+0.7
4,717,379	+				-0.4
4,717,379	+				+0.1
4,717,379	+				-1.1
4,717,380	+				-1.6
4,717,387	-				-0.4
4,717,387	-				+0.1
4,717,387	-				+0.5
4,717,387	-				+1.1
4,717,387	-				+0.9
4,717,397	+				-0.6
4,717,420	+				-2.7
4,717,432	+				-0.3
4,717,433	-				+1.5
4,717,433	-				-0.2
4,717,439	-				-1.2
4,717,440	-				-0.6
4,717,442	+				-0.6
4,717,448	+				-0.5
4,717,448	+				-0.6
4,717,448	+				+1.7
4,717,450	-				+0.8
4,717,450	-				+0.3
4,717,454	+				-0.1
4,717,483	-				-0.4
4,717,488	-				+1.3
4,717,509	-		GFF4715	0.10	-0.6
4,717,509	-		GFF4715	0.10	-0.5
4,717,514	+		GFF4715	0.11	+1.6
4,717,519	+		GFF4715	0.12	+0.0
4,717,535	+		GFF4715	0.13	-0.6
4,717,547	+		GFF4715	0.15	+0.1
4,717,547	+		GFF4715	0.15	-1.3
4,717,557	-		GFF4715	0.16	+1.8
4,717,580	+		GFF4715	0.19	+0.2
4,717,592	+		GFF4715	0.20	-0.1
4,717,603	+		GFF4715	0.21	-0.7
4,717,616	+		GFF4715	0.23	-0.1
4,717,616	+		GFF4715	0.23	-0.8
4,717,616	+		GFF4715	0.23	-1.6
4,717,624	-		GFF4715	0.24	+1.5
4,717,625	-		GFF4715	0.24	-0.1
4,717,625	-		GFF4715	0.24	+1.3
4,717,635	-		GFF4715	0.25	-1.2
4,717,642	+		GFF4715	0.26	-1.1
4,717,660	-		GFF4715	0.28	-0.1
4,717,679	+		GFF4715	0.30	-0.2
4,717,690	-		GFF4715	0.31	+0.7
4,717,744	+		GFF4715	0.38	+1.8
4,717,763	+		GFF4715	0.40	+0.1
4,717,771	-		GFF4715	0.41	-0.4
4,717,778	-		GFF4715	0.42	-0.6
4,717,787	-		GFF4715	0.43	+1.1
4,717,803	-		GFF4715	0.44	+0.9
4,717,807	-		GFF4715	0.45	+1.2
4,717,807	-		GFF4715	0.45	+1.3
4,717,827	+		GFF4715	0.47	+0.9
4,717,827	-		GFF4715	0.47	+0.1
4,717,827	-		GFF4715	0.47	+0.5
4,717,835	-		GFF4715	0.48	-1.4
4,717,851	+		GFF4715	0.50	-0.3
4,717,856	+		GFF4715	0.51	-0.6
4,717,856	+		GFF4715	0.51	-1.2
4,717,856	+		GFF4715	0.51	+0.4
4,717,864	-		GFF4715	0.51	+0.8
4,717,864	-		GFF4715	0.51	-0.8
4,717,872	+		GFF4715	0.52	-2.2
4,717,892	+		GFF4715	0.55	+0.5
4,717,893	+		GFF4715	0.55	+0.4
4,717,893	+		GFF4715	0.55	+0.6
4,717,894	+		GFF4715	0.55	-1.4
4,717,894	-		GFF4715	0.55	+0.8
4,717,901	-		GFF4715	0.56	+0.9
4,717,984	+		GFF4715	0.65	+0.4
4,717,986	-		GFF4715	0.66	+1.0
4,717,989	+		GFF4715	0.66	-1.9
4,717,997	-		GFF4715	0.67	-0.5
4,717,999	+		GFF4715	0.67	+0.0
4,717,999	-		GFF4715	0.67	-1.8
4,718,031	-		GFF4715	0.71	+0.3
4,718,058	-		GFF4715	0.74	-1.2
4,718,061	+		GFF4715	0.74	+0.9
4,718,072	+		GFF4715	0.75	+0.4
4,718,088	+		GFF4715	0.77	-0.6
4,718,093	+		GFF4715	0.78	+1.0
4,718,099	+		GFF4715	0.79	-0.1
4,718,114	-		GFF4715	0.80	+1.4
4,718,134	-		GFF4715	0.83	+0.6
4,718,134	-		GFF4715	0.83	+0.0
4,718,134	-		GFF4715	0.83	+0.3
4,718,159	-		GFF4715	0.85	+0.8
4,718,162	+		GFF4715	0.86	+0.8
4,718,162	+		GFF4715	0.86	+0.1
4,718,197	+		GFF4715	0.90	+1.1
4,718,197	+		GFF4715	0.90	+0.3
4,718,197	+		GFF4715	0.90	-2.4
4,718,197	+		GFF4715	0.90	+1.0
4,718,198	+				+0.4
4,718,205	-				-0.9
4,718,235	+				+0.8
4,718,245	-				+0.1
4,718,245	-				+0.5
4,718,250	-				+0.5
4,718,252	+				+0.4
4,718,253	-				+0.5
4,718,253	-				-0.3
4,718,258	-				-1.7
4,718,260	-				+0.5
4,718,260	-				+0.3
4,718,260	-				+1.4
4,718,266	+				-0.5
4,718,290	-				-1.2
4,718,330	+				+1.5
4,718,381	+		GFF4716	0.20	+0.9
4,718,401	-		GFF4716	0.24	+1.8
4,718,401	-		GFF4716	0.24	-1.0
4,718,403	+		GFF4716	0.24	-1.6
4,718,417	-		GFF4716	0.27	-0.1
4,718,419	-		GFF4716	0.28	+0.8
4,718,430	+		GFF4716	0.30	-0.6
4,718,440	+		GFF4716	0.32	-0.1
4,718,445	+		GFF4716	0.33	+0.6
4,718,460	+		GFF4716	0.36	+1.2
4,718,468	-		GFF4716	0.38	-2.1
4,718,471	+		GFF4716	0.38	-0.5
4,718,476	+		GFF4716	0.39	-0.0
4,718,484	-		GFF4716	0.41	+1.5
4,718,488	+		GFF4716	0.42	+0.1
4,718,499	-		GFF4716	0.44	-1.5
4,718,499	-		GFF4716	0.44	-0.1
4,718,520	+		GFF4716	0.48	+1.2
4,718,541	+		GFF4716	0.52	-0.5
4,718,541	-		GFF4716	0.52	-0.1
4,718,549	-		GFF4716	0.54	-0.9
4,718,587	-		GFF4716	0.61	-0.0
4,718,587	-		GFF4716	0.61	+1.2
4,718,615	-		GFF4716	0.67	-0.4
4,718,624	-		GFF4716	0.69	+0.1
4,718,630	+		GFF4716	0.70	-1.1
4,718,633	+		GFF4716	0.71	-0.1
4,718,692	+		GFF4716	0.83	+0.8
4,718,722	+		GFF4716	0.89	-1.3
4,718,730	-				-0.2
4,718,773	+				-0.1
4,718,773	+				+0.1
4,718,773	+				-2.1
4,718,773	-				-0.3
4,718,784	+				+0.5
4,718,792	-				+0.3
4,718,832	+		GFF4717	0.11	-1.6
4,718,840	-		GFF4717	0.12	+0.5
4,718,865	+		GFF4717	0.17	-0.0
4,718,865	+		GFF4717	0.17	-0.1
4,718,865	+		GFF4717	0.17	+1.8
4,718,865	+		GFF4717	0.17	-0.9
4,718,865	+		GFF4717	0.17	+1.1
4,718,865	+		GFF4717	0.17	+0.8
4,718,865	+		GFF4717	0.17	-0.4
4,718,873	-		GFF4717	0.18	-0.3
4,718,873	-		GFF4717	0.18	+0.3
4,718,873	-		GFF4717	0.18	+0.2
4,718,873	-		GFF4717	0.18	+0.4
4,718,879	+		GFF4717	0.20	-2.0
4,718,879	+		GFF4717	0.20	-2.0
4,718,887	-		GFF4717	0.21	+1.3
4,718,889	-		GFF4717	0.21	-0.2
4,718,891	+		GFF4717	0.22	-0.8
4,718,891	-		GFF4717	0.22	+0.7
4,718,893	+		GFF4717	0.22	+1.0
4,718,899	-		GFF4717	0.23	+0.3
4,718,899	-		GFF4717	0.23	+1.6
4,718,905	+		GFF4717	0.24	+0.7
4,718,952	+		GFF4717	0.33	+0.7
4,719,070	+		GFF4717	0.56	+1.1
4,719,070	+		GFF4717	0.56	-1.1
4,719,078	-		GFF4717	0.57	-1.2
4,719,078	-		GFF4717	0.57	-1.4
4,719,078	-		GFF4717	0.57	-0.8
4,719,092	+		GFF4717	0.60	+0.6
4,719,122	-		GFF4717	0.65	+0.1
4,719,124	-		GFF4717	0.66	+0.1
4,719,148	-		GFF4717	0.70	+0.4
4,719,188	+		GFF4717	0.78	-0.1
4,719,196	-		GFF4717	0.79	-1.1
4,719,196	-		GFF4717	0.79	+0.1
4,719,196	-		GFF4717	0.79	-0.3
4,719,208	-		GFF4717	0.82	+0.1
4,719,267	-				+0.6
4,719,271	+				-0.3
4,719,271	+				+0.3
4,719,274	-				+1.1
4,719,282	-				-1.6
4,719,282	-				+0.7