Strain Fitness in Sphingobium sp. HT1-2 around GFF4702

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,702,025	-				+1.5
4,702,025	-				+0.6
4,702,025	-				+0.2
4,702,034	+				-0.6
4,702,049	+				+1.0
4,702,057	-				+0.6
4,702,063	-				-0.4
4,702,081	-				-0.3
4,702,088	-				-0.1
4,702,103	+				-1.3
4,702,117	+				+0.1
4,702,142	+				-0.8
4,702,148	+				+1.0
4,702,148	+				-0.3
4,702,149	+				-0.2
4,702,156	-				-0.9
4,702,162	-				+1.1
4,702,172	+				+0.3
4,702,185	+				+0.1
4,702,185	+				-0.8
4,702,185	+				-0.9
4,702,185	+				-0.0
4,702,193	-				-0.1
4,702,198	-				+0.8
4,702,206	+				-0.1
4,702,216	+				+0.1
4,702,246	-				+0.5
4,702,256	-				+0.7
4,702,270	+				-0.2
4,702,273	-				-0.4
4,702,278	-				-0.2
4,702,278	-				-0.2
4,702,286	+				-0.1
4,702,296	+				-2.2
4,702,304	-				-1.4
4,702,304	-				+1.1
4,702,304	-				-0.6
4,702,306	+				-0.4
4,702,306	+				-0.2
4,702,306	+				-0.6
4,702,306	+				-0.7
4,702,306	+				+1.1
4,702,314	-				+0.3
4,702,314	-				-0.4
4,702,314	-				-0.5
4,702,314	-				+0.8
4,702,377	+				+2.1
4,702,421	-				+0.5
4,702,421	-				-0.7
4,702,421	-				+0.5
4,702,451	-				-2.0
4,702,461	-				+0.1
4,702,461	-				+1.4
4,702,777	+		GFF4701	0.83	+0.4
4,702,787	+		GFF4701	0.88	+0.5
4,702,832	+				+0.7
4,702,840	-				+0.6
4,702,849	-				+1.1
4,702,859	-				+0.0
4,702,871	+				+1.0
4,702,876	-				+1.1
4,702,879	-				+1.0
4,702,906	-				-0.9
4,702,934	-				+0.8
4,702,962	+				+1.2
4,702,970	-				+0.1
4,702,970	-				-0.9
4,702,975	-				+0.0
4,702,977	+				+0.5
4,702,998	+				+0.4
4,703,028	+				+1.5
4,703,034	+				-0.5
4,703,035	+				-1.6
4,703,036	-				-0.1
4,703,039	+				+0.5
4,703,042	-				+1.3
4,703,042	-				+0.3
4,703,047	-				-0.3
4,703,093	-				+1.0
4,703,111	+				-0.5
4,703,119	-				+1.2
4,703,137	+				-0.5
4,703,144	-		GFF4702	0.10	+0.5
4,703,145	-		GFF4702	0.10	+1.1
4,703,145	-		GFF4702	0.10	-0.7
4,703,146	+		GFF4702	0.10	-1.2
4,703,181	+		GFF4702	0.13	-1.8
4,703,182	-		GFF4702	0.13	-0.8
4,703,182	-		GFF4702	0.13	-1.5
4,703,210	+		GFF4702	0.16	+0.2
4,703,210	+		GFF4702	0.16	+1.0
4,703,218	-		GFF4702	0.16	+0.9
4,703,218	-		GFF4702	0.16	+0.6
4,703,242	+		GFF4702	0.18	-0.3
4,703,242	+		GFF4702	0.18	+0.2
4,703,249	+		GFF4702	0.19	+1.1
4,703,250	-		GFF4702	0.19	+0.7
4,703,255	-		GFF4702	0.19	+0.9
4,703,262	+		GFF4702	0.20	+0.1
4,703,272	+		GFF4702	0.21	-1.9
4,703,275	-		GFF4702	0.21	+0.4
4,703,280	-		GFF4702	0.21	+1.7
4,703,280	-		GFF4702	0.21	-0.3
4,703,280	-		GFF4702	0.21	+1.0
4,703,280	-		GFF4702	0.21	+1.0
4,703,282	+		GFF4702	0.22	-0.5
4,703,282	+		GFF4702	0.22	+0.5
4,703,282	+		GFF4702	0.22	+0.5
4,703,290	-		GFF4702	0.22	+0.1
4,703,290	-		GFF4702	0.22	+1.2
4,703,290	-		GFF4702	0.22	+0.5
4,703,321	-		GFF4702	0.25	-0.3
4,703,322	-		GFF4702	0.25	-1.7
4,703,324	-		GFF4702	0.25	+1.0
4,703,332	+		GFF4702	0.26	+1.1
4,703,332	+		GFF4702	0.26	+0.9
4,703,332	+		GFF4702	0.26	-0.2
4,703,332	+		GFF4702	0.26	+1.2
4,703,332	+		GFF4702	0.26	-1.0
4,703,332	+		GFF4702	0.26	+1.5
4,703,332	+		GFF4702	0.26	+1.4
4,703,332	+		GFF4702	0.26	+1.6
4,703,332	+		GFF4702	0.26	-1.0
4,703,332	+		GFF4702	0.26	-0.2
4,703,332	+		GFF4702	0.26	+0.9
4,703,332	+		GFF4702	0.26	+0.0
4,703,340	-		GFF4702	0.26	+1.2
4,703,340	-		GFF4702	0.26	+0.6
4,703,340	-		GFF4702	0.26	-1.3
4,703,340	-		GFF4702	0.26	-1.3
4,703,340	-		GFF4702	0.26	-2.0
4,703,340	-		GFF4702	0.26	-0.3
4,703,340	-		GFF4702	0.26	-0.2
4,703,340	-		GFF4702	0.26	-0.0
4,703,351	+		GFF4702	0.27	+0.5
4,703,383	-		GFF4702	0.30	+1.7
4,703,411	+		GFF4702	0.32	+0.3
4,703,431	+		GFF4702	0.34	-0.5
4,703,436	+		GFF4702	0.34	+0.0
4,703,441	+		GFF4702	0.35	+1.0
4,703,444	-		GFF4702	0.35	+0.4
4,703,449	-		GFF4702	0.35	-1.0
4,703,449	-		GFF4702	0.35	-0.2
4,703,449	-		GFF4702	0.35	-0.3
4,703,449	-		GFF4702	0.35	+0.2
4,703,449	-		GFF4702	0.35	+0.4
4,703,449	-		GFF4702	0.35	-0.0
4,703,449	-		GFF4702	0.35	+0.2
4,703,449	-		GFF4702	0.35	-0.3
4,703,493	-		GFF4702	0.39	-0.3
4,703,498	-		GFF4702	0.39	-0.0
4,703,498	-		GFF4702	0.39	+0.0
4,703,515	+		GFF4702	0.41	+0.1
4,703,540	-		GFF4702	0.43	-0.0
4,703,540	-		GFF4702	0.43	-0.1
4,703,542	-		GFF4702	0.43	+1.2
4,703,542	-		GFF4702	0.43	+0.2
4,703,542	-		GFF4702	0.43	+0.6
4,703,542	-		GFF4702	0.43	+0.4
4,703,551	-		GFF4702	0.44	+0.1
4,703,551	-		GFF4702	0.44	+1.7
4,703,556	+		GFF4702	0.44	+0.6
4,703,556	+		GFF4702	0.44	+1.0
4,703,566	+		GFF4702	0.45	+1.8
4,703,591	+		GFF4702	0.47	-0.6
4,703,598	-		GFF4702	0.48	+1.2
4,703,599	+		GFF4702	0.48	+0.3
4,703,611	-		GFF4702	0.49	+1.5
4,703,618	+		GFF4702	0.49	+0.9
4,703,653	-		GFF4702	0.52	+0.7
4,703,670	+		GFF4702	0.54	+1.5
4,703,684	-		GFF4702	0.55	+1.3
4,703,684	-		GFF4702	0.55	+0.2
4,703,701	+		GFF4702	0.56	+0.6
4,703,717	-		GFF4702	0.57	+1.8
4,703,734	+		GFF4702	0.59	-1.2
4,703,734	+		GFF4702	0.59	-0.1
4,703,734	+		GFF4702	0.59	-0.3
4,703,734	+		GFF4702	0.59	-0.3
4,703,734	+		GFF4702	0.59	-1.5
4,703,734	+		GFF4702	0.59	+0.1
4,703,734	+		GFF4702	0.59	-0.2
4,703,734	+		GFF4702	0.59	-0.7
4,703,734	+		GFF4702	0.59	-1.3
4,703,734	+		GFF4702	0.59	+1.8
4,703,734	+		GFF4702	0.59	+0.4
4,703,734	+		GFF4702	0.59	+0.5
4,703,742	-		GFF4702	0.59	-0.6
4,703,742	-		GFF4702	0.59	+1.5
4,703,742	-		GFF4702	0.59	+0.5
4,703,742	-		GFF4702	0.59	+0.9
4,703,742	-		GFF4702	0.59	+1.3
4,703,742	-		GFF4702	0.59	+0.0
4,703,742	-		GFF4702	0.59	+1.4
4,703,742	-		GFF4702	0.59	-0.3
4,703,742	-		GFF4702	0.59	+0.4
4,703,742	-		GFF4702	0.59	+0.3
4,703,742	-		GFF4702	0.59	-0.2
4,703,742	-		GFF4702	0.59	+1.1
4,703,742	-		GFF4702	0.59	-0.5
4,703,742	-		GFF4702	0.59	+0.7
4,703,759	+		GFF4702	0.61	-2.2
4,703,761	-		GFF4702	0.61	-0.5
4,703,762	-		GFF4702	0.61	+0.1
4,703,762	-		GFF4702	0.61	+0.1
4,703,762	-		GFF4702	0.61	-0.2
4,703,765	+		GFF4702	0.61	-0.8
4,703,769	-		GFF4702	0.62	+0.8
4,703,769	-		GFF4702	0.62	+1.2
4,703,798	+		GFF4702	0.64	-0.5
4,703,820	+		GFF4702	0.66	+1.0
4,703,820	+		GFF4702	0.66	+0.9
4,703,828	-		GFF4702	0.67	+0.9
4,703,831	-		GFF4702	0.67	-1.8
4,703,838	-		GFF4702	0.67	-1.6
4,703,843	+		GFF4702	0.68	+0.1
4,703,866	-		GFF4702	0.70	+0.0
4,703,867	-		GFF4702	0.70	-0.6
4,703,873	-		GFF4702	0.70	+0.4
4,703,893	+		GFF4702	0.72	-0.5
4,703,913	+		GFF4702	0.74	-0.8
4,703,920	+		GFF4702	0.74	-0.5
4,703,920	-		GFF4702	0.74	+0.6
4,703,921	+		GFF4702	0.74	-0.6
4,703,945	-		GFF4702	0.76	-0.1
4,703,963	-		GFF4702	0.78	+0.6
4,703,994	+		GFF4702	0.80	-0.1
4,704,002	-		GFF4702	0.81	+0.4
4,704,049	+		GFF4702	0.85	-2.3
4,704,054	+		GFF4702	0.85	-2.0
4,704,060	+		GFF4702	0.86	+1.5
4,704,060	-		GFF4702	0.86	-0.8
4,704,072	+		GFF4702	0.87	-0.7
4,704,072	+		GFF4702	0.87	-0.6
4,704,080	-		GFF4702	0.87	-0.0
4,704,080	-		GFF4702	0.87	+1.9
4,704,095	+		GFF4702	0.89	-0.4
4,704,100	+		GFF4702	0.89	+0.2
4,704,113	-				-0.6
4,704,118	-				-1.5
4,704,122	-				+0.5
4,704,133	+				-0.2
4,704,163	-				+0.4
4,704,184	-				+1.5
4,704,288	+				-0.3
4,704,319	+				-0.3
4,704,319	+				+0.6
4,704,319	+				-0.2
4,704,327	-				-0.5
4,704,327	-				-0.3
4,704,327	-				-0.3
4,704,327	-				+0.5
4,704,327	-				-0.3
4,704,327	-				+0.0
4,704,327	-				+1.3
4,704,327	-				-2.2
4,704,330	+				-3.1
4,704,330	+				-0.5
4,704,332	-				+0.8
4,704,333	-				+0.1
4,704,338	-				-0.9
4,704,338	-				-1.8
4,704,338	-				+0.4
4,704,338	-				+0.4
4,704,357	-				+1.1
4,704,371	-				+0.5
4,704,386	+				+1.2
4,704,420	-				+0.6
4,704,422	+				-0.3
4,704,422	+				+0.2
4,704,422	+				-1.5
4,704,422	+				-0.0
4,704,428	+				+0.1
4,704,430	-				-0.1
4,704,439	-				+0.9
4,704,475	-				-0.1
4,704,487	+				+0.7
4,704,500	-				+1.6
4,704,500	-				+0.6
4,704,523	+				-0.9
4,704,528	+				+0.5
4,704,533	+				+0.1
4,704,535	+				+0.2
4,704,543	+				+0.4
4,704,551	+				-1.5
4,704,551	+				+0.6
4,704,551	+				-0.3
4,704,559	-				-0.6
4,704,559	-				-1.0
4,704,561	+				+1.2
4,704,568	+				-1.3
4,704,573	+				+1.1
4,704,575	-				-1.5
4,704,583	+				-0.5
4,704,588	+				+1.3
4,704,588	+				+1.3
4,704,588	+				-1.6
4,704,588	+				-1.7
4,704,588	+				-1.5
4,704,596	-				+0.2
4,704,596	-				+1.0
4,704,596	-				-0.9
4,704,596	-				+0.9
4,704,596	-				+0.4
4,704,596	-				-0.6
4,704,596	-				+1.0
4,704,601	-				+0.7
4,704,607	+				-0.6
4,704,612	+				-0.6
4,704,612	+				+0.6
4,704,614	-				+0.3
4,704,615	-				-2.2
4,704,615	-				+0.0
4,704,620	-				-0.4
4,704,620	-				-1.3
4,704,621	-				+0.2
4,704,621	-				-0.5
4,704,621	-				-0.4
4,704,623	+				-0.4
4,704,628	+				-1.7
4,704,631	-				+1.4
4,704,631	-				+1.1
4,704,632	+				+0.7
4,704,666	+				-2.2
4,704,679	-				-1.9
4,704,681	+				-0.5
4,704,688	+				-0.4
4,704,689	-				-0.0
4,704,696	-				+0.7
4,704,754	+				+0.9
4,704,759	+				-1.5
4,704,762	-				+1.1
4,704,762	-				-0.0
4,704,762	-				-0.1
4,704,762	-				+0.6
4,704,767	-				+1.2
4,704,767	-				-0.6
4,704,767	-				+0.1
4,704,771	+				+1.1
4,704,774	-				+0.4
4,704,799	+				+0.3
4,704,827	-				+0.9
4,704,833	+				+1.3
4,704,833	+				-1.9
4,704,838	+				+0.7
4,704,841	-				+0.5
4,704,854	+		GFF4703	0.11	-1.3
4,704,857	+		GFF4703	0.12	-0.3
4,704,862	+		GFF4703	0.12	-1.7
4,704,862	+		GFF4703	0.12	+0.8
4,704,862	-		GFF4703	0.12	+0.7
4,704,873	+		GFF4703	0.13	-0.4
4,704,928	-		GFF4703	0.20	+1.0
4,704,947	+		GFF4703	0.22	-0.4
4,704,963	-		GFF4703	0.24	+0.3
4,704,965	-		GFF4703	0.24	-0.1
4,704,993	+		GFF4703	0.27	+0.8
4,705,003	-		GFF4703	0.28	-1.6
4,705,006	-		GFF4703	0.29	+0.3
4,705,016	-		GFF4703	0.30	+1.2
4,705,035	-		GFF4703	0.32	+0.6
4,705,037	+		GFF4703	0.32	+1.5
4,705,037	+		GFF4703	0.32	-0.7
4,705,037	+		GFF4703	0.32	+1.0
4,705,043	+		GFF4703	0.33	+1.0
4,705,043	+		GFF4703	0.33	-0.2
4,705,045	-		GFF4703	0.33	+0.4
4,705,045	-		GFF4703	0.33	+1.1
4,705,045	-		GFF4703	0.33	+0.3
4,705,051	-		GFF4703	0.34	-2.5
4,705,051	-		GFF4703	0.34	+0.2
4,705,063	+		GFF4703	0.35	+1.1
4,705,063	+		GFF4703	0.35	+0.4
4,705,063	+		GFF4703	0.35	-0.7
4,705,063	+		GFF4703	0.35	+0.5
4,705,071	-		GFF4703	0.36	+0.1
4,705,071	-		GFF4703	0.36	+0.1
4,705,071	-		GFF4703	0.36	+1.8
4,705,071	-		GFF4703	0.36	-0.3
4,705,071	-		GFF4703	0.36	-0.6
4,705,071	-		GFF4703	0.36	+0.4
4,705,083	+		GFF4703	0.37	-1.5
4,705,084	-		GFF4703	0.37	-0.9
4,705,089	-		GFF4703	0.38	-0.4
4,705,089	-		GFF4703	0.38	-0.6
4,705,096	-		GFF4703	0.39	-2.0
4,705,117	+		GFF4703	0.41	+0.5
4,705,119	+		GFF4703	0.41	+1.0
4,705,119	-		GFF4703	0.41	+0.1
4,705,134	+		GFF4703	0.43	+0.7
4,705,142	-		GFF4703	0.44	-0.4
4,705,176	-		GFF4703	0.48	+1.4
4,705,183	+		GFF4703	0.49	+0.9