Strain Fitness in Sphingobium sp. HT1-2 around GFF4674

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,669,654	+		GFF4673	0.41	+1.0
4,669,673	+		GFF4673	0.42	+0.1
4,669,673	+		GFF4673	0.42	-1.8
4,669,681	-		GFF4673	0.43	-0.8
4,669,681	-		GFF4673	0.43	-1.2
4,669,681	-		GFF4673	0.43	+0.4
4,669,699	-		GFF4673	0.44	-0.5
4,669,702	+		GFF4673	0.44	-0.2
4,669,734	-		GFF4673	0.46	-1.7
4,669,741	+		GFF4673	0.46	+0.4
4,669,743	+		GFF4673	0.46	+0.2
4,669,777	-		GFF4673	0.48	+1.2
4,669,802	+		GFF4673	0.50	+0.4
4,669,802	+		GFF4673	0.50	+0.2
4,669,810	-		GFF4673	0.50	+0.6
4,669,817	+		GFF4673	0.51	-2.0
4,669,843	+		GFF4673	0.52	+1.4
4,669,860	+		GFF4673	0.53	+0.8
4,669,873	-		GFF4673	0.54	-0.8
4,669,881	+		GFF4673	0.55	+0.3
4,669,934	-		GFF4673	0.58	+1.5
4,669,940	+		GFF4673	0.58	-1.7
4,670,007	-		GFF4673	0.62	+0.3
4,670,044	+		GFF4673	0.64	+1.1
4,670,047	-		GFF4673	0.64	+1.8
4,670,059	-		GFF4673	0.65	-0.3
4,670,084	-		GFF4673	0.66	-1.4
4,670,089	+		GFF4673	0.67	+0.8
4,670,102	-		GFF4673	0.68	+1.2
4,670,140	+		GFF4673	0.70	-1.2
4,670,140	+		GFF4673	0.70	-0.6
4,670,145	+		GFF4673	0.70	+1.1
4,670,153	+		GFF4673	0.71	+0.5
4,670,158	+		GFF4673	0.71	+0.8
4,670,160	+		GFF4673	0.71	+0.3
4,670,160	+		GFF4673	0.71	+0.4
4,670,161	-		GFF4673	0.71	+0.8
4,670,161	-		GFF4673	0.71	-0.4
4,670,161	-		GFF4673	0.71	-0.4
4,670,163	+		GFF4673	0.71	+0.2
4,670,163	+		GFF4673	0.71	+0.9
4,670,171	-		GFF4673	0.72	+2.1
4,670,171	-		GFF4673	0.72	+0.6
4,670,172	-		GFF4673	0.72	+0.1
4,670,174	+		GFF4673	0.72	+0.2
4,670,182	-		GFF4673	0.72	-0.6
4,670,182	-		GFF4673	0.72	-0.2
4,670,182	-		GFF4673	0.72	-1.1
4,670,182	-		GFF4673	0.72	+1.8
4,670,216	+		GFF4673	0.74	+0.6
4,670,216	+		GFF4673	0.74	-1.4
4,670,224	-		GFF4673	0.75	+0.4
4,670,224	-		GFF4673	0.75	-0.3
4,670,231	-		GFF4673	0.75	+0.5
4,670,248	+		GFF4673	0.76	-0.0
4,670,270	+		GFF4673	0.77	+0.3
4,670,307	+		GFF4673	0.80	-0.5
4,670,312	+		GFF4673	0.80	+0.2
4,670,315	-		GFF4673	0.80	-0.6
4,670,320	-		GFF4673	0.80	-0.0
4,670,352	+		GFF4673	0.82	+1.1
4,670,368	-		GFF4673	0.83	-2.2
4,670,370	+		GFF4673	0.83	+0.6
4,670,375	+		GFF4673	0.84	-1.5
4,670,375	+		GFF4673	0.84	+0.5
4,670,378	-		GFF4673	0.84	+0.0
4,670,383	-		GFF4673	0.84	+0.5
4,670,406	-		GFF4673	0.85	+0.3
4,670,434	-		GFF4673	0.87	-0.5
4,670,441	+		GFF4673	0.88	-1.6
4,670,441	+		GFF4673	0.88	+0.2
4,670,444	-		GFF4673	0.88	-1.0
4,670,469	+		GFF4673	0.89	+1.2
4,670,480	+		GFF4673	0.90	-0.8
4,670,480	+		GFF4673	0.90	-1.1
4,670,480	+		GFF4673	0.90	+0.5
4,670,480	+		GFF4673	0.90	+1.7
4,670,480	+		GFF4673	0.90	-0.3
4,670,485	+				-1.3
4,670,485	+				+0.2
4,670,485	+				-0.6
4,670,485	+				+0.6
4,670,485	+				+0.6
4,670,485	+				+1.8
4,670,485	+				-1.6
4,670,488	-				+0.3
4,670,488	-				-1.5
4,670,488	-				+0.3
4,670,488	-				+0.4
4,670,488	-				-0.8
4,670,493	-				-0.2
4,670,493	-				-0.5
4,670,493	-				+1.7
4,670,493	-				-0.3
4,670,493	-				-1.4
4,670,493	-				-0.7
4,670,493	-				-0.8
4,670,493	-				-0.2
4,670,508	+				-0.4
4,670,508	-				+0.6
4,670,535	-				-0.5
4,670,541	-				+0.8
4,670,594	-				-0.5
4,670,596	+				+0.6
4,670,596	+				+0.7
4,670,596	+				-2.5
4,670,604	-				-0.0
4,670,643	-				-1.2
4,670,650	+				+0.3
4,670,663	+				+1.2
4,670,670	+				-0.0
4,670,671	-				+0.4
4,670,671	-				-1.8
4,670,674	+				-1.6
4,670,704	-				+1.1
4,670,717	-				-1.7
4,670,720	-				+0.6
4,670,735	+				+1.3
4,670,735	+				-0.7
4,670,735	+				-1.4
4,670,741	-				+0.3
4,670,743	-				-0.4
4,670,743	-				-0.2
4,670,743	-				+1.2
4,670,743	-				-0.8
4,670,743	-				-0.2
4,670,743	-				+1.0
4,670,769	-		GFF4674	0.10	+0.4
4,670,792	+		GFF4674	0.12	-1.4
4,670,816	+		GFF4674	0.14	+1.0
4,670,816	+		GFF4674	0.14	+0.7
4,670,816	+		GFF4674	0.14	+1.9
4,670,817	-		GFF4674	0.15	-0.3
4,670,818	-		GFF4674	0.15	-1.8
4,670,824	-		GFF4674	0.15	-0.2
4,670,824	-		GFF4674	0.15	-0.0
4,670,824	-		GFF4674	0.15	+0.1
4,670,853	+		GFF4674	0.18	-1.4
4,670,865	+		GFF4674	0.19	-1.4
4,670,873	-		GFF4674	0.19	-0.1
4,670,875	+		GFF4674	0.20	+0.0
4,670,923	+		GFF4674	0.24	-1.4
4,670,924	+		GFF4674	0.24	-1.3
4,670,931	-		GFF4674	0.24	+1.1
4,670,932	-		GFF4674	0.25	-0.4
4,670,936	-		GFF4674	0.25	+0.2
4,670,937	-		GFF4674	0.25	-1.2
4,670,942	+		GFF4674	0.25	+0.4
4,670,944	+		GFF4674	0.26	-0.4
4,670,947	+		GFF4674	0.26	+1.0
4,670,947	+		GFF4674	0.26	+0.9
4,670,947	+		GFF4674	0.26	-0.6
4,670,947	+		GFF4674	0.26	+1.3
4,670,950	-		GFF4674	0.26	+0.9
4,670,955	-		GFF4674	0.27	-1.9
4,670,955	-		GFF4674	0.27	+0.7
4,670,957	+		GFF4674	0.27	-0.1
4,670,962	+		GFF4674	0.27	-0.8
4,670,962	+		GFF4674	0.27	-2.4
4,670,962	+		GFF4674	0.27	-1.8
4,670,962	+		GFF4674	0.27	+0.3
4,670,965	-		GFF4674	0.27	-2.8
4,670,970	-		GFF4674	0.28	-1.0
4,670,970	-		GFF4674	0.28	+0.8
4,670,991	-		GFF4674	0.30	-1.4
4,671,002	+		GFF4674	0.31	-0.0
4,671,010	-		GFF4674	0.31	-0.6
4,671,035	+		GFF4674	0.34	-0.6
4,671,050	+		GFF4674	0.35	+1.3
4,671,050	+		GFF4674	0.35	-0.2
4,671,058	-		GFF4674	0.36	+0.5
4,671,058	-		GFF4674	0.36	+0.7
4,671,058	-		GFF4674	0.36	+0.4
4,671,058	-		GFF4674	0.36	+1.1
4,671,092	-		GFF4674	0.38	+1.5
4,671,122	-		GFF4674	0.41	+0.3
4,671,122	-		GFF4674	0.41	+0.5
4,671,127	-		GFF4674	0.41	-0.8
4,671,145	+		GFF4674	0.43	-0.1
4,671,145	+		GFF4674	0.43	-1.5
4,671,153	-		GFF4674	0.44	-0.3
4,671,155	+		GFF4674	0.44	-0.2
4,671,158	-		GFF4674	0.44	-0.5
4,671,163	-		GFF4674	0.45	+0.2
4,671,163	-		GFF4674	0.45	-0.2
4,671,166	-		GFF4674	0.45	-0.4
4,671,168	+		GFF4674	0.45	-0.1
4,671,168	+		GFF4674	0.45	-0.5
4,671,168	+		GFF4674	0.45	-0.6
4,671,173	+		GFF4674	0.45	-1.4
4,671,176	-		GFF4674	0.46	+0.9
4,671,176	-		GFF4674	0.46	-0.6
4,671,176	-		GFF4674	0.46	+0.4
4,671,183	-		GFF4674	0.46	+0.5
4,671,200	+		GFF4674	0.48	+0.4
4,671,200	+		GFF4674	0.48	-0.2
4,671,205	+		GFF4674	0.48	+1.2
4,671,209	-		GFF4674	0.49	+0.3
4,671,210	+		GFF4674	0.49	+0.1
4,671,214	+		GFF4674	0.49	+0.5
4,671,219	+		GFF4674	0.49	+1.6
4,671,223	-		GFF4674	0.50	-0.1
4,671,239	-		GFF4674	0.51	+2.6
4,671,263	-		GFF4674	0.53	+1.0
4,671,265	+		GFF4674	0.53	-1.2
4,671,265	+		GFF4674	0.53	+0.8
4,671,273	-		GFF4674	0.54	+0.1
4,671,273	-		GFF4674	0.54	-0.2
4,671,301	-		GFF4674	0.57	-0.2
4,671,321	-		GFF4674	0.58	+1.2
4,671,333	+		GFF4674	0.59	-0.1
4,671,333	+		GFF4674	0.59	+0.1
4,671,341	-		GFF4674	0.60	-0.4
4,671,341	-		GFF4674	0.60	-0.8
4,671,394	+		GFF4674	0.65	-0.1
4,671,394	+		GFF4674	0.65	+0.6
4,671,394	+		GFF4674	0.65	+1.5
4,671,402	-		GFF4674	0.65	+0.5
4,671,422	+		GFF4674	0.67	+0.2
4,671,431	+		GFF4674	0.68	-0.1
4,671,431	-		GFF4674	0.68	+0.6
4,671,436	+		GFF4674	0.68	-0.6
4,671,444	+		GFF4674	0.69	-0.6
4,671,444	-		GFF4674	0.69	+1.4
4,671,449	-		GFF4674	0.69	+0.1
4,671,450	-		GFF4674	0.70	-0.8
4,671,450	-		GFF4674	0.70	-0.2
4,671,483	+		GFF4674	0.72	+1.2
4,671,537	-		GFF4674	0.77	+0.9
4,671,545	-		GFF4674	0.78	+0.2
4,671,570	+		GFF4674	0.80	+1.4
4,671,578	-		GFF4674	0.81	-0.2
4,671,582	-		GFF4674	0.81	+1.0
4,671,610	+		GFF4674	0.83	+0.7
4,671,610	+		GFF4674	0.83	+0.3
4,671,610	+		GFF4674	0.83	+0.6
4,671,610	+		GFF4674	0.83	+0.9
4,671,610	+		GFF4674	0.83	+0.2
4,671,610	+		GFF4674	0.83	-1.6
4,671,618	-		GFF4674	0.84	+0.9
4,671,618	-		GFF4674	0.84	-1.2
4,671,633	+		GFF4674	0.85	+1.1
4,671,667	-		GFF4674	0.88	-0.6
4,671,669	+		GFF4674	0.89	+0.1
4,671,677	-		GFF4674	0.89	+1.1
4,671,677	-		GFF4674	0.89	+0.4
4,671,677	-		GFF4674	0.89	+0.2
4,671,677	-		GFF4674	0.89	+0.4
4,671,710	+				-0.4
4,671,710	+				-1.4
4,671,710	+				-0.6
4,671,718	-				-0.0
4,671,718	-				+0.7
4,671,718	-				+0.5
4,671,718	-				-0.2
4,671,754	-				+0.8
4,671,785	+				+0.9
4,671,785	+				+0.1
4,671,800	-				+0.2
4,671,804	-				+0.4
4,671,813	+				+0.3
4,671,813	+				+0.6
4,671,815	-				-1.0
4,671,821	-				+0.8
4,671,821	-				-0.5
4,671,821	-				+0.1
4,671,821	-				-0.2
4,671,821	-				+0.9
4,671,849	-				+0.4
4,671,849	-				-2.2
4,671,851	-				-1.9
4,671,865	+				+1.4
4,671,880	+				+0.4
4,671,890	-				+0.9
4,671,906	+		GFF4675	0.10	-1.6
4,671,913	+		GFF4675	0.11	+0.3
4,671,921	-		GFF4675	0.12	+1.1
4,671,930	-		GFF4675	0.13	+0.5
4,671,937	-		GFF4675	0.13	+0.6
4,671,976	+		GFF4675	0.17	-0.5
4,671,992	-		GFF4675	0.18	+1.3
4,672,065	-		GFF4675	0.25	-0.7
4,672,070	+		GFF4675	0.26	-0.6
4,672,078	-		GFF4675	0.27	+1.1
4,672,096	-		GFF4675	0.28	+0.5
4,672,115	-		GFF4675	0.30	+0.0
4,672,125	-		GFF4675	0.31	-0.2
4,672,125	-		GFF4675	0.31	-1.4
4,672,130	-		GFF4675	0.31	-0.1
4,672,133	-		GFF4675	0.32	+0.6
4,672,144	+		GFF4675	0.33	-0.6
4,672,163	+		GFF4675	0.35	+0.5
4,672,163	+		GFF4675	0.35	-0.1
4,672,182	-		GFF4675	0.36	+1.6
4,672,192	+		GFF4675	0.37	+0.4
4,672,192	+		GFF4675	0.37	-0.9
4,672,192	+		GFF4675	0.37	+1.1
4,672,192	+		GFF4675	0.37	-0.4
4,672,192	+		GFF4675	0.37	+0.2
4,672,192	+		GFF4675	0.37	-2.0
4,672,192	+		GFF4675	0.37	+1.2
4,672,193	+		GFF4675	0.37	-0.4
4,672,200	-		GFF4675	0.38	+1.4
4,672,200	-		GFF4675	0.38	+0.7
4,672,200	-		GFF4675	0.38	+0.2
4,672,206	-		GFF4675	0.39	-0.5
4,672,210	+		GFF4675	0.39	+0.3
4,672,231	-		GFF4675	0.41	+0.2
4,672,243	+		GFF4675	0.42	-0.7
4,672,243	+		GFF4675	0.42	+0.8
4,672,248	+		GFF4675	0.43	-1.2
4,672,249	-		GFF4675	0.43	-0.9
4,672,251	-		GFF4675	0.43	+0.3
4,672,251	-		GFF4675	0.43	+1.8
4,672,251	-		GFF4675	0.43	-1.5
4,672,256	-		GFF4675	0.43	+0.5
4,672,256	-		GFF4675	0.43	-0.2
4,672,271	-		GFF4675	0.45	-0.9
4,672,275	+		GFF4675	0.45	-1.0
4,672,277	+		GFF4675	0.45	+1.1
4,672,277	+		GFF4675	0.45	+1.0
4,672,277	+		GFF4675	0.45	+0.2
4,672,285	-		GFF4675	0.46	-1.9
4,672,317	+		GFF4675	0.49	-0.2
4,672,348	+		GFF4675	0.52	-0.2
4,672,352	-		GFF4675	0.52	-0.3
4,672,410	+		GFF4675	0.58	+0.3
4,672,410	+		GFF4675	0.58	-1.2
4,672,453	+		GFF4675	0.62	-1.2
4,672,481	-		GFF4675	0.65	-0.7
4,672,488	+		GFF4675	0.65	+0.9
4,672,522	+		GFF4675	0.68	+1.0
4,672,522	+		GFF4675	0.68	+0.6
4,672,522	+		GFF4675	0.68	-0.4
4,672,522	+		GFF4675	0.68	+0.6
4,672,522	+		GFF4675	0.68	+0.4
4,672,522	+		GFF4675	0.68	+0.5
4,672,522	+		GFF4675	0.68	-0.6
4,672,522	+		GFF4675	0.68	+0.7
4,672,522	+		GFF4675	0.68	-0.3
4,672,530	-		GFF4675	0.69	+2.3
4,672,530	-		GFF4675	0.69	-0.4
4,672,530	-		GFF4675	0.69	+1.1
4,672,530	-		GFF4675	0.69	+0.6
4,672,530	-		GFF4675	0.69	-0.0
4,672,530	-		GFF4675	0.69	+0.8
4,672,530	-		GFF4675	0.69	-0.7
4,672,530	-		GFF4675	0.69	+0.9
4,672,530	-		GFF4675	0.69	-0.8
4,672,541	-		GFF4675	0.70	-0.7
4,672,566	+		GFF4675	0.73	-1.2
4,672,566	+		GFF4675	0.73	-0.2
4,672,566	+		GFF4675	0.73	-1.8
4,672,566	+		GFF4675	0.73	+0.7
4,672,566	+		GFF4675	0.73	+0.4
4,672,566	+		GFF4675	0.73	+0.3
4,672,566	+		GFF4675	0.73	+1.4
4,672,566	+		GFF4675	0.73	-1.8
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