Strain Fitness in Sphingobium sp. HT1-2 around GFF4614

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,608,143	-		GFF4612	0.64	-0.0
4,608,163	+		GFF4612	0.67	+0.2
4,608,171	-		GFF4612	0.68	-1.2
4,608,171	-		GFF4612	0.68	-1.6
4,608,181	+		GFF4612	0.69	-2.4
4,608,200	+		GFF4612	0.71	-1.1
4,608,200	+		GFF4612	0.71	+0.5
4,608,205	+		GFF4612	0.71	+1.0
4,608,208	-		GFF4612	0.72	+0.1
4,608,208	-		GFF4612	0.72	-0.1
4,608,208	-		GFF4612	0.72	+0.1
4,608,208	-		GFF4612	0.72	-1.8
4,608,208	-		GFF4612	0.72	+0.9
4,608,217	+		GFF4612	0.73	-0.6
4,608,217	+		GFF4612	0.73	-0.3
4,608,218	-		GFF4612	0.73	-0.0
4,608,225	-		GFF4612	0.74	-1.5
4,608,225	-		GFF4612	0.74	-1.1
4,608,241	+		GFF4612	0.76	-1.6
4,608,256	+		GFF4612	0.77	-0.9
4,608,261	+		GFF4612	0.78	-0.9
4,608,264	-		GFF4612	0.78	-2.1
4,608,269	-		GFF4612	0.79	+1.0
4,608,282	+		GFF4612	0.80	-2.2
4,608,287	+		GFF4612	0.81	-0.6
4,608,303	-		GFF4612	0.83	-1.6
4,608,315	-		GFF4612	0.84	-2.2
4,608,317	+		GFF4612	0.84	+0.2
4,608,332	+		GFF4612	0.86	+0.1
4,608,339	-		GFF4612	0.87	-1.7
4,608,340	-		GFF4612	0.87	-1.5
4,608,353	+		GFF4612	0.88	+1.7
4,608,359	-		GFF4612	0.89	-0.7
4,608,361	+		GFF4612	0.89	+0.7
4,608,381	+				+0.3
4,608,384	-				-1.0
4,608,388	+				+1.0
4,608,388	+				-1.2
4,608,388	+				-2.1
4,608,388	+				+0.4
4,608,408	-				-1.5
4,608,458	+				-0.6
4,608,458	+				-0.7
4,608,466	-				-0.7
4,608,522	+		GFF4613	0.10	+0.7
4,608,530	-		GFF4613	0.12	+0.3
4,608,530	-		GFF4613	0.12	+0.3
4,608,534	+		GFF4613	0.12	-0.3
4,608,534	+		GFF4613	0.12	+0.9
4,608,570	-		GFF4613	0.19	-1.3
4,608,570	-		GFF4613	0.19	-0.9
4,608,576	-		GFF4613	0.20	-0.2
4,608,580	+		GFF4613	0.21	-1.9
4,608,582	+		GFF4613	0.21	-0.3
4,608,582	+		GFF4613	0.21	-1.3
4,608,587	+		GFF4613	0.22	-0.8
4,608,587	+		GFF4613	0.22	-2.3
4,608,587	+		GFF4613	0.22	-0.1
4,608,588	-		GFF4613	0.22	+1.2
4,608,589	+		GFF4613	0.23	+0.6
4,608,590	-		GFF4613	0.23	-1.3
4,608,595	-		GFF4613	0.24	-0.4
4,608,597	+		GFF4613	0.24	-2.3
4,608,597	+		GFF4613	0.24	+0.2
4,608,599	+		GFF4613	0.24	-1.5
4,608,599	+		GFF4613	0.24	-1.7
4,608,599	+		GFF4613	0.24	+0.7
4,608,601	+		GFF4613	0.25	-0.0
4,608,605	+		GFF4613	0.26	-0.4
4,608,605	-		GFF4613	0.26	-1.3
4,608,607	-		GFF4613	0.26	-2.3
4,608,615	-		GFF4613	0.27	+0.6
4,608,617	-		GFF4613	0.28	+0.0
4,608,624	+		GFF4613	0.29	+1.2
4,608,629	+		GFF4613	0.30	-0.5
4,608,636	+		GFF4613	0.31	-1.4
4,608,654	-		GFF4613	0.35	-1.5
4,608,668	+		GFF4613	0.37	-0.1
4,608,681	+		GFF4613	0.40	+0.1
4,608,689	-		GFF4613	0.41	-0.0
4,608,689	-		GFF4613	0.41	+1.0
4,608,691	+		GFF4613	0.41	-1.9
4,608,694	-		GFF4613	0.42	+0.1
4,608,699	-		GFF4613	0.43	-1.5
4,608,720	+		GFF4613	0.47	+0.0
4,608,742	+		GFF4613	0.51	-0.4
4,608,745	-		GFF4613	0.51	+0.7
4,608,755	-		GFF4613	0.53	-1.9
4,608,768	-		GFF4613	0.56	-0.7
4,608,775	+		GFF4613	0.57	+0.4
4,608,777	-		GFF4613	0.57	+0.4
4,608,788	-		GFF4613	0.59	-1.4
4,608,792	+		GFF4613	0.60	+0.3
4,608,792	+		GFF4613	0.60	+0.5
4,608,792	+		GFF4613	0.60	-0.8
4,608,792	+		GFF4613	0.60	-1.0
4,608,792	+		GFF4613	0.60	-2.3
4,608,792	+		GFF4613	0.60	-1.7
4,608,792	+		GFF4613	0.60	+0.6
4,608,792	-		GFF4613	0.60	-0.1
4,608,800	-		GFF4613	0.62	+0.3
4,608,800	-		GFF4613	0.62	+0.2
4,608,800	-		GFF4613	0.62	+0.3
4,608,800	-		GFF4613	0.62	+0.4
4,608,800	-		GFF4613	0.62	-0.5
4,608,800	-		GFF4613	0.62	-0.0
4,608,800	-		GFF4613	0.62	-0.6
4,608,800	-		GFF4613	0.62	-0.6
4,608,802	-		GFF4613	0.62	-0.2
4,608,802	-		GFF4613	0.62	-3.1
4,608,802	-		GFF4613	0.62	-0.3
4,608,820	+		GFF4613	0.65	+0.2
4,608,822	+		GFF4613	0.66	+0.5
4,608,823	-		GFF4613	0.66	-3.2
4,608,827	+		GFF4613	0.67	-0.7
4,608,830	-		GFF4613	0.67	-1.3
4,608,835	-		GFF4613	0.68	-1.7
4,608,835	-		GFF4613	0.68	+0.9
4,608,867	-		GFF4613	0.74	+1.2
4,608,873	-		GFF4613	0.75	-0.5
4,608,899	+		GFF4613	0.80	-0.1
4,608,899	+		GFF4613	0.80	-0.4
4,608,899	+		GFF4613	0.80	-0.3
4,608,902	-		GFF4613	0.81	+0.2
4,608,904	+		GFF4613	0.81	-1.8
4,608,904	+		GFF4613	0.81	-0.8
4,608,907	-		GFF4613	0.81	-0.8
4,608,907	-		GFF4613	0.81	-2.3
4,608,907	-		GFF4613	0.81	+0.4
4,608,907	-		GFF4613	0.81	+0.7
4,608,907	-		GFF4613	0.81	+0.3
4,608,912	-		GFF4613	0.82	+0.4
4,608,917	-		GFF4613	0.83	-0.4
4,608,919	+		GFF4613	0.84	-0.2
4,608,919	+		GFF4613	0.84	+0.6
4,608,927	-		GFF4613	0.85	+0.7
4,608,927	-		GFF4613	0.85	-1.1
4,608,928	-		GFF4613	0.85	-0.1
4,608,928	-		GFF4613	0.85	-0.1
4,608,935	-		GFF4613	0.87	+0.6
4,608,968	+				-1.3
4,608,969	-				-0.6
4,608,971	-				+0.2
4,608,976	-				+0.7
4,609,010	+				-0.6
4,609,010	+				-0.4
4,609,010	+				-1.2
4,609,014	+				+0.7
4,609,018	-				-0.1
4,609,056	+				-1.7
4,609,056	+				-1.5
4,609,056	+				+0.5
4,609,064	-				+0.5
4,609,064	-				+0.3
4,609,064	-				-1.6
4,609,064	-				-0.6
4,609,064	-				+0.1
4,609,090	-				+0.2
4,609,101	+				+0.4
4,609,101	+				-0.9
4,609,101	+				-1.7
4,609,101	+				+0.3
4,609,109	-				-0.0
4,609,109	-				+0.2
4,609,149	-				+0.9
4,609,183	-		GFF4614	0.10	+0.6
4,609,193	-		GFF4614	0.12	+0.2
4,609,214	-		GFF4614	0.15	-0.5
4,609,216	+		GFF4614	0.15	+1.3
4,609,216	+		GFF4614	0.15	+0.5
4,609,216	+		GFF4614	0.15	+0.6
4,609,216	+		GFF4614	0.15	-1.9
4,609,216	+		GFF4614	0.15	-1.1
4,609,219	-		GFF4614	0.16	-0.9
4,609,221	+		GFF4614	0.16	-0.3
4,609,221	+		GFF4614	0.16	+0.2
4,609,221	+		GFF4614	0.16	-1.0
4,609,221	+		GFF4614	0.16	-0.8
4,609,221	+		GFF4614	0.16	-1.4
4,609,221	+		GFF4614	0.16	+0.4
4,609,221	+		GFF4614	0.16	-0.6
4,609,221	+		GFF4614	0.16	-0.1
4,609,221	+		GFF4614	0.16	-0.2
4,609,221	+		GFF4614	0.16	-2.1
4,609,221	+		GFF4614	0.16	+0.1
4,609,224	-		GFF4614	0.17	-0.0
4,609,224	-		GFF4614	0.17	-0.1
4,609,228	+		GFF4614	0.17	-1.3
4,609,229	-		GFF4614	0.17	+0.2
4,609,229	-		GFF4614	0.17	-0.6
4,609,229	-		GFF4614	0.17	-0.7
4,609,229	-		GFF4614	0.17	-1.5
4,609,229	-		GFF4614	0.17	-1.3
4,609,229	-		GFF4614	0.17	-0.9
4,609,229	-		GFF4614	0.17	-2.1
4,609,229	-		GFF4614	0.17	+0.4
4,609,229	-		GFF4614	0.17	-0.7
4,609,229	-		GFF4614	0.17	+1.8
4,609,229	-		GFF4614	0.17	+0.1
4,609,238	+		GFF4614	0.19	-1.5
4,609,239	+		GFF4614	0.19	-2.0
4,609,239	+		GFF4614	0.19	-0.1
4,609,246	-		GFF4614	0.20	+0.8
4,609,253	+		GFF4614	0.21	-0.3
4,609,253	+		GFF4614	0.21	+0.4
4,609,253	+		GFF4614	0.21	-0.2
4,609,258	+		GFF4614	0.22	+0.4
4,609,261	-		GFF4614	0.22	+0.3
4,609,261	-		GFF4614	0.22	-0.5
4,609,296	+		GFF4614	0.28	-0.6
4,609,298	+		GFF4614	0.28	+0.9
4,609,319	+		GFF4614	0.31	-0.5
4,609,319	+		GFF4614	0.31	-1.7
4,609,319	+		GFF4614	0.31	+1.0
4,609,325	+		GFF4614	0.32	+0.2
4,609,327	-		GFF4614	0.33	+0.2
4,609,327	-		GFF4614	0.33	-0.3
4,609,327	-		GFF4614	0.33	-2.3
4,609,327	-		GFF4614	0.33	-1.0
4,609,327	-		GFF4614	0.33	-0.3
4,609,332	-		GFF4614	0.33	-0.1
4,609,344	+		GFF4614	0.35	-0.0
4,609,344	+		GFF4614	0.35	+0.6
4,609,344	+		GFF4614	0.35	-1.0
4,609,344	+		GFF4614	0.35	-0.7
4,609,344	+		GFF4614	0.35	-0.3
4,609,344	+		GFF4614	0.35	+0.2
4,609,344	+		GFF4614	0.35	-1.7
4,609,352	-		GFF4614	0.37	+1.1
4,609,352	-		GFF4614	0.37	-1.1
4,609,352	-		GFF4614	0.37	-0.3
4,609,352	-		GFF4614	0.37	-0.5
4,609,352	-		GFF4614	0.37	-1.9
4,609,352	-		GFF4614	0.37	-0.8
4,609,352	-		GFF4614	0.37	-0.2
4,609,352	-		GFF4614	0.37	-1.9
4,609,352	-		GFF4614	0.37	+0.5
4,609,383	+		GFF4614	0.42	-1.1
4,609,391	-		GFF4614	0.43	-2.5
4,609,391	-		GFF4614	0.43	-0.4
4,609,426	+		GFF4614	0.48	-0.9
4,609,429	-		GFF4614	0.49	-0.6
4,609,429	-		GFF4614	0.49	-0.9
4,609,450	+		GFF4614	0.52	-1.0
4,609,450	+		GFF4614	0.52	-0.7
4,609,453	-		GFF4614	0.53	+0.3
4,609,458	-		GFF4614	0.53	-0.5
4,609,458	-		GFF4614	0.53	+0.6
4,609,458	-		GFF4614	0.53	+0.1
4,609,458	-		GFF4614	0.53	-0.3
4,609,458	-		GFF4614	0.53	-0.0
4,609,458	-		GFF4614	0.53	-1.4
4,609,463	-		GFF4614	0.54	-1.4
4,609,463	-		GFF4614	0.54	-0.8
4,609,467	+		GFF4614	0.55	-0.5
4,609,467	+		GFF4614	0.55	+0.0
4,609,467	+		GFF4614	0.55	-0.6
4,609,475	-		GFF4614	0.56	-0.7
4,609,477	+		GFF4614	0.56	-1.1
4,609,482	+		GFF4614	0.57	-0.4
4,609,490	-		GFF4614	0.58	-0.8
4,609,536	-		GFF4614	0.66	+0.1
4,609,549	+		GFF4614	0.68	-0.8
4,609,557	-		GFF4614	0.69	-0.4
4,609,559	+		GFF4614	0.69	-0.4
4,609,559	+		GFF4614	0.69	-2.5
4,609,559	+		GFF4614	0.69	+0.5
4,609,563	+		GFF4614	0.70	-0.2
4,609,567	-		GFF4614	0.70	-1.3
4,609,586	+		GFF4614	0.73	-1.3
4,609,606	-		GFF4614	0.77	-1.8
4,609,615	-		GFF4614	0.78	-1.1
4,609,616	-		GFF4614	0.78	-0.5
4,609,622	+		GFF4614	0.79	-0.0
4,609,630	-		GFF4614	0.80	-0.6
4,609,630	-		GFF4614	0.80	-1.0
4,609,659	+		GFF4614	0.85	+0.1
4,609,659	+		GFF4614	0.85	-0.3
4,609,660	-		GFF4614	0.85	-0.2
4,609,660	-		GFF4614	0.85	-1.1
4,609,660	-		GFF4614	0.85	-1.2
4,609,662	+		GFF4614	0.85	-0.8
4,609,672	-		GFF4614	0.87	-1.7
4,609,672	-		GFF4614	0.87	-1.7
4,609,677	-		GFF4614	0.88	-2.2
4,609,703	+				-1.6
4,609,703	-				-1.3
4,609,707	-				-0.7
4,609,714	-				-0.6
4,609,719	-				+0.8
4,609,733	+				-1.0
4,609,741	-				+1.0
4,609,758	+				-2.1
4,609,766	-				-0.2
4,609,815	+				+0.1
4,609,815	+				-0.3
4,609,815	-				+1.2
4,609,823	-				-0.7
4,609,823	-				-1.9
4,609,823	-				+0.4
4,609,823	-				-0.7
4,609,841	-				+0.4
4,609,841	-				-0.2
4,609,891	+				-1.1
4,609,918	+				-2.1
4,609,918	+				+2.1
4,609,918	+				-1.3
4,609,926	-				-0.1
4,609,932	-		GFF4615	0.11	+0.1
4,609,932	-		GFF4615	0.11	-0.0
4,609,936	-		GFF4615	0.11	+1.4
4,609,968	+		GFF4615	0.14	-0.7
4,609,968	+		GFF4615	0.14	+1.0
4,609,968	+		GFF4615	0.14	-1.5
4,609,968	+		GFF4615	0.14	-0.5
4,609,968	+		GFF4615	0.14	-1.1
4,609,968	+		GFF4615	0.14	-0.2
4,609,968	+		GFF4615	0.14	+0.2
4,609,968	+		GFF4615	0.14	-0.4
4,609,968	+		GFF4615	0.14	-0.3
4,609,976	-		GFF4615	0.14	+0.1
4,609,976	-		GFF4615	0.14	+0.1
4,609,976	-		GFF4615	0.14	-1.3
4,609,981	+		GFF4615	0.15	-0.0
4,610,000	+		GFF4615	0.16	+0.4
4,610,000	+		GFF4615	0.16	-2.1
4,610,008	-		GFF4615	0.17	-1.1
4,610,017	+		GFF4615	0.18	-0.1
4,610,037	+		GFF4615	0.20	+0.0
4,610,075	+		GFF4615	0.23	-1.3
4,610,112	+		GFF4615	0.26	-0.1
4,610,112	+		GFF4615	0.26	+1.3
4,610,112	+		GFF4615	0.26	-0.8
4,610,112	+		GFF4615	0.26	+0.1
4,610,112	+		GFF4615	0.26	-0.4
4,610,112	+		GFF4615	0.26	-0.7
4,610,112	+		GFF4615	0.26	-0.0
4,610,112	+		GFF4615	0.26	-0.8
4,610,117	+		GFF4615	0.27	-1.1
4,610,120	-		GFF4615	0.27	-1.8
4,610,120	-		GFF4615	0.27	-1.8
4,610,120	-		GFF4615	0.27	-2.4
4,610,120	-		GFF4615	0.27	-0.0
4,610,120	-		GFF4615	0.27	+0.1
4,610,120	-		GFF4615	0.27	-0.5
4,610,122	+		GFF4615	0.27	-0.8
4,610,122	+		GFF4615	0.27	-0.0
4,610,122	+		GFF4615	0.27	+1.5
4,610,122	+		GFF4615	0.27	-0.6
4,610,122	+		GFF4615	0.27	-1.7
4,610,122	+		GFF4615	0.27	-2.6
4,610,130	-		GFF4615	0.28	+0.1
4,610,136	-		GFF4615	0.28	+0.0
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