Strain Fitness in Sphingobium sp. HT1-2 around GFF4568

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,559,192	-		GFF4566	0.68	-0.4
4,559,237	-		GFF4566	0.72	-0.8
4,559,242	-		GFF4566	0.72	-1.5
4,559,267	+		GFF4566	0.75	-0.7
4,559,267	+		GFF4566	0.75	+1.1
4,559,275	-		GFF4566	0.75	-0.6
4,559,275	-		GFF4566	0.75	-1.6
4,559,275	-		GFF4566	0.75	-0.9
4,559,288	-		GFF4566	0.77	+0.9
4,559,288	-		GFF4566	0.77	+0.4
4,559,324	+		GFF4566	0.80	+0.1
4,559,324	+		GFF4566	0.80	-0.7
4,559,332	-		GFF4566	0.81	-0.4
4,559,332	-		GFF4566	0.81	+0.6
4,559,332	-		GFF4566	0.81	-1.7
4,559,355	+		GFF4566	0.83	-1.4
4,559,355	+		GFF4566	0.83	+0.0
4,559,363	-		GFF4566	0.84	-0.1
4,559,363	-		GFF4566	0.84	-0.2
4,559,367	-		GFF4566	0.84	-1.2
4,559,367	-		GFF4566	0.84	+0.6
4,559,373	-		GFF4566	0.84	-0.2
4,559,373	-		GFF4566	0.84	-0.2
4,559,375	-		GFF4566	0.85	-0.2
4,559,400	-		GFF4566	0.87	-0.3
4,559,403	+		GFF4566	0.87	-0.5
4,559,423	+		GFF4566	0.89	+1.8
4,559,423	+		GFF4566	0.89	-0.7
4,559,423	+		GFF4566	0.89	+0.5
4,559,426	-		GFF4566	0.89	+0.1
4,559,428	-		GFF4566	0.90	+0.5
4,559,436	-				-3.6
4,559,441	-				-1.3
4,559,446	+				-1.2
4,559,446	+				-1.2
4,559,460	+				-0.9
4,559,460	+				-2.6
4,559,480	+				-0.4
4,559,495	+				+0.7
4,559,514	+				-0.8
4,559,515	-				-0.8
4,559,517	-				-1.1
4,559,526	+				-1.8
4,559,526	+				-0.4
4,559,526	+				-0.4
4,559,526	+				+1.4
4,559,534	-				-0.2
4,559,534	-				-0.5
4,559,534	-				-1.5
4,559,534	-				-2.5
4,559,534	-				-0.9
4,559,596	+				+0.1
4,559,596	+				-1.6
4,559,596	+				-0.8
4,559,604	-				-2.1
4,559,604	-				-1.6
4,559,611	+				-1.6
4,559,622	+				-0.1
4,559,631	+				+0.4
4,559,631	+				+0.4
4,559,631	+				-3.1
4,559,631	+				-0.5
4,559,631	+				-0.4
4,559,635	+				-1.4
4,559,639	-				-0.6
4,559,639	-				+0.7
4,559,651	-				+0.1
4,559,656	-				-2.1
4,559,656	-				-0.6
4,559,672	+				-0.7
4,559,672	+				+1.0
4,559,672	+				-1.7
4,559,680	+				+0.1
4,559,680	-				-0.5
4,559,685	+				-1.7
4,559,687	-				-0.5
4,559,687	-				-1.6
4,559,691	+		GFF4567	0.11	-0.5
4,559,702	+		GFF4567	0.13	-0.2
4,559,710	-		GFF4567	0.14	+0.0
4,559,728	+		GFF4567	0.17	-2.2
4,559,735	-		GFF4567	0.19	+0.8
4,559,762	+		GFF4567	0.24	-3.3
4,559,762	+		GFF4567	0.24	-0.2
4,559,767	+		GFF4567	0.25	-1.4
4,559,770	-		GFF4567	0.25	+0.5
4,559,791	+		GFF4567	0.29	-0.3
4,559,799	-		GFF4567	0.31	-1.5
4,559,803	+		GFF4567	0.31	-0.3
4,559,808	+		GFF4567	0.32	-0.3
4,559,808	+		GFF4567	0.32	-1.4
4,559,811	+		GFF4567	0.33	-1.6
4,559,818	+		GFF4567	0.34	-0.5
4,559,821	+		GFF4567	0.35	-0.3
4,559,826	-		GFF4567	0.36	-0.7
4,559,827	-		GFF4567	0.36	+0.4
4,559,832	+		GFF4567	0.37	-1.1
4,559,913	-		GFF4567	0.52	-1.4
4,559,956	+		GFF4567	0.60	-1.3
4,559,986	+		GFF4567	0.65	-0.5
4,559,992	-		GFF4567	0.66	-0.0
4,559,992	-		GFF4567	0.66	-0.8
4,559,994	-		GFF4567	0.67	+0.5
4,560,002	-		GFF4567	0.68	-0.8
4,560,004	+		GFF4567	0.69	-0.6
4,560,012	-		GFF4567	0.70	-0.4
4,560,016	+		GFF4567	0.71	-1.7
4,560,017	-		GFF4567	0.71	+0.8
4,560,017	-		GFF4567	0.71	-0.7
4,560,026	+		GFF4567	0.73	+0.1
4,560,030	+		GFF4567	0.73	-0.7
4,560,030	+		GFF4567	0.73	+0.1
4,560,032	+		GFF4567	0.74	-1.3
4,560,038	-		GFF4567	0.75	-0.2
4,560,049	+		GFF4567	0.77	-0.7
4,560,049	+		GFF4567	0.77	-0.7
4,560,049	+		GFF4567	0.77	-0.4
4,560,049	+		GFF4567	0.77	+0.3
4,560,057	-		GFF4567	0.78	-0.7
4,560,057	-		GFF4567	0.78	-0.4
4,560,057	-		GFF4567	0.78	-0.0
4,560,057	-		GFF4567	0.78	-0.9
4,560,057	-		GFF4567	0.78	+0.4
4,560,057	-		GFF4567	0.78	-0.4
4,560,064	-		GFF4567	0.80	-0.6
4,560,075	+		GFF4567	0.82	-0.3
4,560,075	-		GFF4567	0.82	-1.2
4,560,083	-		GFF4567	0.83	+0.3
4,560,083	-		GFF4567	0.83	-0.8
4,560,088	-		GFF4567	0.84	+0.7
4,560,095	+		GFF4567	0.85	-0.3
4,560,126	+				+0.4
4,560,156	+				+1.1
4,560,167	+				-1.5
4,560,167	+				+0.4
4,560,167	+				+0.4
4,560,183	+				-1.1
4,560,183	+				+0.1
4,560,191	-				+0.7
4,560,191	-				+1.5
4,560,201	+				-0.4
4,560,267	-				-0.9
4,560,315	-		GFF4568	0.11	-0.3
4,560,315	-		GFF4568	0.11	-1.0
4,560,324	+		GFF4568	0.12	-0.4
4,560,324	+		GFF4568	0.12	+1.1
4,560,324	+		GFF4568	0.12	-0.7
4,560,324	+		GFF4568	0.12	+0.4
4,560,324	+		GFF4568	0.12	-0.4
4,560,349	+		GFF4568	0.14	-0.3
4,560,349	+		GFF4568	0.14	-2.1
4,560,352	-		GFF4568	0.14	-1.9
4,560,352	-		GFF4568	0.14	+2.2
4,560,368	+		GFF4568	0.16	-1.9
4,560,368	+		GFF4568	0.16	+1.5
4,560,368	+		GFF4568	0.16	+0.1
4,560,368	+		GFF4568	0.16	+0.8
4,560,368	+		GFF4568	0.16	-0.5
4,560,368	+		GFF4568	0.16	-0.2
4,560,368	+		GFF4568	0.16	-0.6
4,560,371	-		GFF4568	0.16	+0.4
4,560,371	-		GFF4568	0.16	+0.4
4,560,376	+		GFF4568	0.16	+0.2
4,560,376	-		GFF4568	0.16	-0.4
4,560,376	-		GFF4568	0.16	+0.9
4,560,376	-		GFF4568	0.16	-0.9
4,560,376	-		GFF4568	0.16	-0.4
4,560,376	-		GFF4568	0.16	-0.1
4,560,376	-		GFF4568	0.16	-1.4
4,560,385	+		GFF4568	0.17	-0.1
4,560,398	-		GFF4568	0.18	-1.0
4,560,432	-		GFF4568	0.21	+0.1
4,560,432	-		GFF4568	0.21	-0.3
4,560,441	-		GFF4568	0.22	-1.8
4,560,447	+		GFF4568	0.22	+0.2
4,560,458	+		GFF4568	0.23	+0.1
4,560,475	-		GFF4568	0.24	+0.6
4,560,479	+		GFF4568	0.25	+0.6
4,560,479	+		GFF4568	0.25	-0.2
4,560,479	+		GFF4568	0.25	+1.1
4,560,479	+		GFF4568	0.25	+1.2
4,560,479	+		GFF4568	0.25	-0.2
4,560,479	+		GFF4568	0.25	-0.3
4,560,479	+		GFF4568	0.25	+1.3
4,560,479	+		GFF4568	0.25	-0.7
4,560,484	+		GFF4568	0.25	-0.2
4,560,487	-		GFF4568	0.25	-0.8
4,560,487	-		GFF4568	0.25	+0.4
4,560,487	-		GFF4568	0.25	-0.3
4,560,487	-		GFF4568	0.25	-0.2
4,560,487	-		GFF4568	0.25	+0.2
4,560,487	-		GFF4568	0.25	+0.4
4,560,487	-		GFF4568	0.25	+0.4
4,560,489	+		GFF4568	0.26	-0.3
4,560,506	+		GFF4568	0.27	-0.6
4,560,517	+		GFF4568	0.28	-0.5
4,560,517	+		GFF4568	0.28	-0.1
4,560,525	-		GFF4568	0.29	-0.7
4,560,538	+		GFF4568	0.30	-0.7
4,560,538	+		GFF4568	0.30	-0.4
4,560,538	+		GFF4568	0.30	+0.6
4,560,538	+		GFF4568	0.30	-1.7
4,560,538	+		GFF4568	0.30	-0.0
4,560,538	+		GFF4568	0.30	+1.3
4,560,538	+		GFF4568	0.30	+0.5
4,560,538	+		GFF4568	0.30	-1.2
4,560,538	+		GFF4568	0.30	-0.2
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	+0.9
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	-0.7
4,560,538	+		GFF4568	0.30	-0.8
4,560,538	+		GFF4568	0.30	-0.5
4,560,538	+		GFF4568	0.30	-1.6
4,560,538	+		GFF4568	0.30	-0.1
4,560,538	+		GFF4568	0.30	+0.3
4,560,538	+		GFF4568	0.30	-0.3
4,560,538	+		GFF4568	0.30	-1.1
4,560,538	+		GFF4568	0.30	+0.5
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	-2.0
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	-1.0
4,560,538	+		GFF4568	0.30	-1.4
4,560,538	+		GFF4568	0.30	+0.8
4,560,538	+		GFF4568	0.30	+1.9
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	-0.3
4,560,538	+		GFF4568	0.30	+0.7
4,560,538	+		GFF4568	0.30	+0.3
4,560,538	+		GFF4568	0.30	+0.7
4,560,538	+		GFF4568	0.30	-0.2
4,560,538	+		GFF4568	0.30	-0.2
4,560,538	+		GFF4568	0.30	-0.5
4,560,538	+		GFF4568	0.30	-0.1
4,560,544	+		GFF4568	0.30	-1.1
4,560,546	-		GFF4568	0.30	+0.1
4,560,546	-		GFF4568	0.30	-1.4
4,560,546	-		GFF4568	0.30	-0.6
4,560,546	-		GFF4568	0.30	+0.9
4,560,546	-		GFF4568	0.30	+0.4
4,560,546	-		GFF4568	0.30	+1.1
4,560,546	-		GFF4568	0.30	+0.1
4,560,546	-		GFF4568	0.30	+0.6
4,560,546	-		GFF4568	0.30	-0.1
4,560,546	-		GFF4568	0.30	-1.6
4,560,546	-		GFF4568	0.30	+0.6
4,560,546	-		GFF4568	0.30	-0.8
4,560,546	-		GFF4568	0.30	+1.0
4,560,546	-		GFF4568	0.30	+0.1
4,560,546	-		GFF4568	0.30	-0.7
4,560,546	-		GFF4568	0.30	-0.1
4,560,546	-		GFF4568	0.30	+0.2
4,560,546	-		GFF4568	0.30	+0.3
4,560,546	-		GFF4568	0.30	-0.6
4,560,546	-		GFF4568	0.30	-1.4
4,560,546	-		GFF4568	0.30	-1.3
4,560,546	-		GFF4568	0.30	+0.4
4,560,546	-		GFF4568	0.30	-1.0
4,560,546	-		GFF4568	0.30	-0.3
4,560,546	-		GFF4568	0.30	-0.6
4,560,546	-		GFF4568	0.30	-0.3
4,560,546	-		GFF4568	0.30	-0.4
4,560,546	-		GFF4568	0.30	-0.7
4,560,546	-		GFF4568	0.30	-0.6
4,560,549	+		GFF4568	0.31	+0.8
4,560,549	+		GFF4568	0.31	+0.4
4,560,549	+		GFF4568	0.31	+0.6
4,560,549	+		GFF4568	0.31	+1.2
4,560,549	+		GFF4568	0.31	+0.9
4,560,552	+		GFF4568	0.31	+0.6
4,560,557	-		GFF4568	0.31	+0.6
4,560,557	-		GFF4568	0.31	+1.7
4,560,557	-		GFF4568	0.31	-0.8
4,560,557	-		GFF4568	0.31	-0.9
4,560,557	-		GFF4568	0.31	-0.4
4,560,557	-		GFF4568	0.31	+0.4
4,560,559	+		GFF4568	0.31	+0.3
4,560,596	+		GFF4568	0.34	-0.4
4,560,596	+		GFF4568	0.34	+0.4
4,560,604	-		GFF4568	0.35	-2.2
4,560,620	+		GFF4568	0.36	-0.9
4,560,620	+		GFF4568	0.36	-1.1
4,560,626	+		GFF4568	0.37	-0.9
4,560,628	-		GFF4568	0.37	-0.7
4,560,628	-		GFF4568	0.37	+0.3
4,560,628	-		GFF4568	0.37	-0.4
4,560,629	-		GFF4568	0.37	+0.6
4,560,630	+		GFF4568	0.37	-0.6
4,560,630	+		GFF4568	0.37	-1.4
4,560,630	+		GFF4568	0.37	-0.4
4,560,630	+		GFF4568	0.37	-0.1
4,560,630	+		GFF4568	0.37	-1.4
4,560,638	-		GFF4568	0.38	-2.1
4,560,638	-		GFF4568	0.38	-0.1
4,560,638	-		GFF4568	0.38	-0.2
4,560,638	-		GFF4568	0.38	-1.1
4,560,639	+		GFF4568	0.38	-1.1
4,560,643	-		GFF4568	0.38	-1.7
4,560,644	+		GFF4568	0.38	+1.1
4,560,647	-		GFF4568	0.39	-0.7
4,560,651	+		GFF4568	0.39	-2.8
4,560,651	+		GFF4568	0.39	+0.2
4,560,656	+		GFF4568	0.39	+0.2
4,560,656	+		GFF4568	0.39	+0.0
4,560,656	+		GFF4568	0.39	+0.5
4,560,656	+		GFF4568	0.39	+0.6
4,560,656	+		GFF4568	0.39	-0.1
4,560,659	-		GFF4568	0.40	-1.2
4,560,661	+		GFF4568	0.40	-0.2
4,560,661	+		GFF4568	0.40	-1.0
4,560,661	+		GFF4568	0.40	-0.9
4,560,661	+		GFF4568	0.40	-2.1
4,560,661	+		GFF4568	0.40	+0.8
4,560,664	-		GFF4568	0.40	-0.2
4,560,664	-		GFF4568	0.40	+0.7
4,560,664	-		GFF4568	0.40	-1.8
4,560,664	-		GFF4568	0.40	+0.5
4,560,666	+		GFF4568	0.40	-2.1
4,560,666	+		GFF4568	0.40	-0.5
4,560,666	+		GFF4568	0.40	-1.0
4,560,666	+		GFF4568	0.40	-2.7
4,560,666	+		GFF4568	0.40	+0.7
4,560,666	+		GFF4568	0.40	-1.1
4,560,666	+		GFF4568	0.40	+0.1
4,560,666	+		GFF4568	0.40	-0.5
4,560,666	+		GFF4568	0.40	-0.9
4,560,666	+		GFF4568	0.40	-0.4
4,560,669	-		GFF4568	0.40	+0.3
4,560,669	-		GFF4568	0.40	-0.3
4,560,671	+		GFF4568	0.41	-1.7
4,560,671	+		GFF4568	0.41	-0.6
4,560,674	-		GFF4568	0.41	-0.5
4,560,674	-		GFF4568	0.41	-0.3
4,560,674	-		GFF4568	0.41	+0.4
4,560,674	-		GFF4568	0.41	-0.4
4,560,674	-		GFF4568	0.41	-0.1
4,560,674	-		GFF4568	0.41	-0.3
4,560,679	-		GFF4568	0.41	+0.7
4,560,679	-		GFF4568	0.41	-2.9
4,560,692	-		GFF4568	0.42	+0.1
4,560,701	+		GFF4568	0.43	+0.4
4,560,728	-		GFF4568	0.45	+0.6
4,560,736	+		GFF4568	0.46	-0.9
4,560,741	+		GFF4568	0.46	-0.0
4,560,749	-		GFF4568	0.47	+0.9
4,560,754	-		GFF4568	0.47	-1.4
4,560,756	+		GFF4568	0.48	-0.4
4,560,759	+		GFF4568	0.48	-1.3
4,560,763	+		GFF4568	0.48	-2.4
4,560,779	-		GFF4568	0.49	+0.2
4,560,780	+		GFF4568	0.49	+1.4
4,560,788	-		GFF4568	0.50	+0.2
4,560,790	+		GFF4568	0.50	-0.2
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4,561,288	-				-2.6
4,561,307	+				+0.1
4,561,307	+				+0.0
4,561,307	+				-1.0
4,561,307	+				+0.4
4,561,307	+				-1.8
4,561,307	+				-1.2
4,561,307	+				-1.3
4,561,307	+				-0.8
4,561,307	+				-0.3
4,561,311	-				-1.5
4,561,312	+				-0.6
4,561,315	-				+0.4
4,561,315	-				-0.1
4,561,317	+				-0.1
4,561,317	+				-0.8
4,561,317	+				-0.1
4,561,317	+				-2.9
4,561,317	+				-0.4
4,561,317	+				-0.6
4,561,325	-				-1.1
4,561,325	-				-0.4
4,561,325	-				+0.6
4,561,325	-				-2.1
4,561,335	-				-0.8
4,561,344	-				-0.4
4,561,353	-				-0.5
4,561,367	+				-0.7
4,561,390	+				-0.3
4,561,398	-				-2.2
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4,561,446	+				+0.4
4,561,454	-				-0.9
4,561,455	+				+0.2
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4,561,457	+				-0.0
4,561,457	+				-0.3
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4,561,646	+		GFF4569	0.48	-1.8
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4,561,676	-		GFF4569	0.54	-1.0
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4,561,881	+				+0.6
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4,562,081	-				+0.2