Strain Fitness in Sphingobium sp. HT1-2 around GFF4548

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,538,578	-				+1.9
4,538,612	+				-1.4
4,538,627	+				+0.4
4,538,627	+				-1.8
4,538,627	+				-0.4
4,538,627	+				-0.9
4,538,627	+				-2.0
4,538,627	+				+0.1
4,538,627	+				-0.1
4,538,627	+				-2.0
4,538,627	+				-0.3
4,538,631	+				-2.3
4,538,635	-				+0.2
4,538,635	-				+0.1
4,538,635	-				+0.6
4,538,635	-				-0.2
4,538,635	-				+0.9
4,538,635	-				-0.6
4,538,637	+				+0.2
4,538,645	-				-0.7
4,538,662	+		GFF4546	0.11	-1.4
4,538,667	-		GFF4546	0.13	+0.3
4,538,670	-		GFF4546	0.14	+0.1
4,538,684	+		GFF4546	0.17	+0.3
4,538,698	-		GFF4546	0.21	+0.1
4,538,707	-		GFF4546	0.24	+0.6
4,538,723	-		GFF4546	0.28	-0.8
4,538,726	+		GFF4546	0.29	+0.4
4,538,726	+		GFF4546	0.29	-1.1
4,538,726	+		GFF4546	0.29	-2.4
4,538,726	+		GFF4546	0.29	+0.2
4,538,726	+		GFF4546	0.29	+1.9
4,538,726	+		GFF4546	0.29	+0.8
4,538,726	+		GFF4546	0.29	-1.4
4,538,734	-		GFF4546	0.31	+0.2
4,538,734	-		GFF4546	0.31	+0.8
4,538,734	-		GFF4546	0.31	-0.6
4,538,734	-		GFF4546	0.31	-0.6
4,538,734	-		GFF4546	0.31	-1.7
4,538,734	-		GFF4546	0.31	-1.2
4,538,734	-		GFF4546	0.31	+0.3
4,538,747	+		GFF4546	0.35	+1.5
4,538,752	+		GFF4546	0.36	-0.5
4,538,755	+		GFF4546	0.37	-1.8
4,538,758	+		GFF4546	0.38	+0.2
4,538,761	-		GFF4546	0.39	+0.6
4,538,775	+		GFF4546	0.42	+0.6
4,538,775	+		GFF4546	0.42	-1.5
4,538,778	-		GFF4546	0.43	+0.4
4,538,778	-		GFF4546	0.43	-0.2
4,538,780	+		GFF4546	0.44	-1.5
4,538,780	+		GFF4546	0.44	-1.6
4,538,780	+		GFF4546	0.44	-0.2
4,538,780	+		GFF4546	0.44	-0.7
4,538,780	+		GFF4546	0.44	+0.3
4,538,783	-		GFF4546	0.45	+0.6
4,538,783	-		GFF4546	0.45	-1.5
4,538,783	-		GFF4546	0.45	-0.8
4,538,785	+		GFF4546	0.45	-0.5
4,538,785	+		GFF4546	0.45	-2.0
4,538,785	+		GFF4546	0.45	-0.2
4,538,785	+		GFF4546	0.45	-0.4
4,538,788	-		GFF4546	0.46	-0.2
4,538,788	-		GFF4546	0.46	+1.3
4,538,788	-		GFF4546	0.46	-0.2
4,538,788	-		GFF4546	0.46	+0.1
4,538,792	+		GFF4546	0.47	-0.8
4,538,793	-		GFF4546	0.47	-0.5
4,538,793	-		GFF4546	0.47	-0.2
4,538,793	-		GFF4546	0.47	+1.1
4,538,800	-		GFF4546	0.49	-0.8
4,538,812	+		GFF4546	0.52	-1.6
4,538,828	+		GFF4546	0.57	-0.0
4,538,830	+		GFF4546	0.57	+0.6
4,538,830	+		GFF4546	0.57	+0.5
4,538,836	-		GFF4546	0.59	-0.6
4,538,838	-		GFF4546	0.60	+0.4
4,538,845	+		GFF4546	0.61	-0.7
4,538,846	-		GFF4546	0.62	+0.2
4,538,848	+		GFF4546	0.62	+0.1
4,538,855	+		GFF4546	0.64	-0.2
4,538,871	-		GFF4546	0.69	+0.1
4,538,879	+		GFF4546	0.71	+0.1
4,538,889	+		GFF4546	0.73	-2.0
4,538,911	+		GFF4546	0.80	-0.4
4,538,911	+		GFF4546	0.80	-2.5
4,538,911	+		GFF4546	0.80	+1.0
4,538,911	+		GFF4546	0.80	-2.3
4,538,919	-		GFF4546	0.82	-1.0
4,538,926	+		GFF4546	0.84	-0.9
4,538,926	+		GFF4546	0.84	-1.8
4,538,926	+		GFF4546	0.84	+0.8
4,538,929	-		GFF4546	0.84	+0.4
4,538,935	-		GFF4546	0.86	-0.0
4,538,937	+		GFF4546	0.87	+0.0
4,538,937	+		GFF4546	0.87	-0.7
4,538,941	-		GFF4546	0.88	+0.3
4,538,947	+		GFF4546	0.89	-0.1
4,538,950	-				+1.3
4,538,952	+				+0.5
4,538,952	+				-0.7
4,538,952	+				-0.3
4,538,952	+				+0.3
4,538,952	+				+0.2
4,538,952	+				-0.6
4,538,952	+				-1.4
4,538,952	+				-0.6
4,538,952	+				-1.9
4,538,960	-				-0.2
4,538,960	-				-0.1
4,538,960	-				+0.0
4,538,960	-				-0.4
4,538,960	-				+0.5
4,538,960	-				-0.4
4,538,960	-				+0.8
4,538,960	-				-2.6
4,538,960	-				-0.6
4,538,969	+				-1.9
4,538,979	-				+0.1
4,539,019	-				+0.3
4,539,031	-				-0.3
4,539,033	+				+0.7
4,539,033	+				-0.1
4,539,041	-				-2.5
4,539,041	-				+0.6
4,539,057	+				-0.7
4,539,063	-				+0.9
4,539,064	+				+0.1
4,539,078	-				+0.9
4,539,099	+				+0.3
4,539,119	-		GFF4547	0.11	+0.4
4,539,120	-		GFF4547	0.11	-0.7
4,539,122	+		GFF4547	0.12	-0.3
4,539,128	+		GFF4547	0.13	+0.7
4,539,130	-		GFF4547	0.13	-0.1
4,539,136	+		GFF4547	0.15	-0.0
4,539,136	+		GFF4547	0.15	-2.4
4,539,144	-		GFF4547	0.17	-1.1
4,539,149	-		GFF4547	0.18	-2.2
4,539,149	-		GFF4547	0.18	-1.7
4,539,149	-		GFF4547	0.18	+0.4
4,539,162	+		GFF4547	0.21	-0.4
4,539,168	+		GFF4547	0.22	-1.7
4,539,168	+		GFF4547	0.22	-1.0
4,539,168	+		GFF4547	0.22	+0.3
4,539,168	+		GFF4547	0.22	-2.8
4,539,176	-		GFF4547	0.24	-0.8
4,539,176	-		GFF4547	0.24	-0.8
4,539,176	-		GFF4547	0.24	-0.2
4,539,188	+		GFF4547	0.27	-0.5
4,539,188	+		GFF4547	0.27	-1.2
4,539,188	+		GFF4547	0.27	-0.5
4,539,188	+		GFF4547	0.27	+0.0
4,539,196	-		GFF4547	0.29	-1.6
4,539,219	+		GFF4547	0.34	+0.1
4,539,234	+		GFF4547	0.38	-2.4
4,539,234	+		GFF4547	0.38	-0.9
4,539,241	-		GFF4547	0.39	-0.6
4,539,242	-		GFF4547	0.39	-0.2
4,539,253	-		GFF4547	0.42	-0.4
4,539,265	+		GFF4547	0.45	-0.9
4,539,275	+		GFF4547	0.47	-0.5
4,539,282	+		GFF4547	0.49	-1.9
4,539,288	-		GFF4547	0.50	-2.4
4,539,288	-		GFF4547	0.50	+0.2
4,539,310	-		GFF4547	0.55	+0.6
4,539,311	-		GFF4547	0.55	-1.5
4,539,320	+		GFF4547	0.57	-2.5
4,539,333	-		GFF4547	0.60	-0.2
4,539,333	-		GFF4547	0.60	-0.4
4,539,333	-		GFF4547	0.60	+0.1
4,539,333	-		GFF4547	0.60	+0.8
4,539,341	-		GFF4547	0.62	-1.1
4,539,346	+		GFF4547	0.63	-0.2
4,539,367	+		GFF4547	0.68	-2.0
4,539,439	-		GFF4547	0.85	-1.2
4,539,450	-		GFF4547	0.88	-0.9
4,539,459	+		GFF4547	0.90	-0.3
4,539,461	+				-1.5
4,539,469	-				-0.8
4,539,497	+				-0.8
4,539,500	-				-2.1
4,539,505	-				-1.2
4,539,505	-				-0.8
4,539,505	-				+0.6
4,539,505	-				+0.8
4,539,505	-				+0.4
4,539,511	+				-1.8
4,539,522	+				+0.3
4,539,527	+				+1.2
4,539,532	+				+1.1
4,539,532	+				+0.4
4,539,540	-				+1.3
4,539,540	-				-0.6
4,539,546	+				-0.4
4,539,554	-				-0.2
4,539,566	+				-2.9
4,539,566	+				-0.3
4,539,571	+				-1.5
4,539,571	+				+0.7
4,539,574	-				-2.2
4,539,574	-				-0.3
4,539,574	-				+0.1
4,539,574	-				-0.8
4,539,579	-				-0.4
4,539,579	-				+1.0
4,539,579	-				-0.3
4,539,579	-				+0.3
4,539,579	-				+0.1
4,539,579	-				+1.0
4,539,584	-				-0.2
4,539,585	+				-0.4
4,539,613	+		GFF4548	0.12	+0.8
4,539,623	+		GFF4548	0.14	-0.6
4,539,623	+		GFF4548	0.14	-0.3
4,539,623	+		GFF4548	0.14	-1.9
4,539,624	-		GFF4548	0.14	+0.0
4,539,626	+		GFF4548	0.14	-2.2
4,539,626	-		GFF4548	0.14	+1.4
4,539,631	+		GFF4548	0.14	+1.0
4,539,631	+		GFF4548	0.14	-0.7
4,539,631	+		GFF4548	0.14	-1.4
4,539,631	-		GFF4548	0.14	+0.6
4,539,631	-		GFF4548	0.14	-2.0
4,539,633	+		GFF4548	0.15	+0.5
4,539,639	-		GFF4548	0.15	-0.4
4,539,641	-		GFF4548	0.16	-1.8
4,539,643	+		GFF4548	0.16	-1.1
4,539,651	+		GFF4548	0.17	-0.1
4,539,658	-		GFF4548	0.17	-1.0
4,539,669	+		GFF4548	0.19	+0.5
4,539,675	-		GFF4548	0.19	-0.1
4,539,684	+		GFF4548	0.20	+0.5
4,539,689	+		GFF4548	0.21	+0.1
4,539,692	-		GFF4548	0.21	+1.1
4,539,694	+		GFF4548	0.21	-3.0
4,539,697	-		GFF4548	0.22	-1.9
4,539,697	-		GFF4548	0.22	-0.1
4,539,702	-		GFF4548	0.22	-1.2
4,539,702	-		GFF4548	0.22	-0.4
4,539,702	-		GFF4548	0.22	-0.9
4,539,705	+		GFF4548	0.23	-1.7
4,539,705	+		GFF4548	0.23	+0.1
4,539,705	+		GFF4548	0.23	-0.2
4,539,713	-		GFF4548	0.24	+0.6
4,539,713	-		GFF4548	0.24	-1.3
4,539,723	+		GFF4548	0.25	-1.7
4,539,723	+		GFF4548	0.25	-0.8
4,539,731	-		GFF4548	0.25	+1.1
4,539,731	-		GFF4548	0.25	+0.0
4,539,741	-		GFF4548	0.27	-0.9
4,539,749	-		GFF4548	0.27	-0.7
4,539,751	+		GFF4548	0.28	-0.0
4,539,751	+		GFF4548	0.28	+0.6
4,539,753	+		GFF4548	0.28	+0.2
4,539,753	+		GFF4548	0.28	+1.2
4,539,758	+		GFF4548	0.28	-1.8
4,539,758	+		GFF4548	0.28	-1.7
4,539,759	-		GFF4548	0.29	+0.0
4,539,759	-		GFF4548	0.29	+0.7
4,539,759	-		GFF4548	0.29	-0.3
4,539,759	-		GFF4548	0.29	+1.1
4,539,761	-		GFF4548	0.29	+0.8
4,539,761	-		GFF4548	0.29	-1.3
4,539,761	-		GFF4548	0.29	-0.2
4,539,766	-		GFF4548	0.29	-0.7
4,539,766	-		GFF4548	0.29	+0.7
4,539,775	+		GFF4548	0.30	-2.2
4,539,778	+		GFF4548	0.31	-0.5
4,539,778	+		GFF4548	0.31	-2.4
4,539,786	-		GFF4548	0.32	+0.4
4,539,788	-		GFF4548	0.32	-1.9
4,539,788	-		GFF4548	0.32	-1.1
4,539,788	-		GFF4548	0.32	+0.2
4,539,788	-		GFF4548	0.32	+0.3
4,539,830	+		GFF4548	0.36	-0.7
4,539,844	-		GFF4548	0.38	-2.4
4,539,852	-		GFF4548	0.39	-0.5
4,539,856	+		GFF4548	0.39	-0.5
4,539,866	-		GFF4548	0.40	+0.7
4,539,877	+		GFF4548	0.42	-0.8
4,539,877	+		GFF4548	0.42	+0.1
4,539,891	-		GFF4548	0.43	+0.1
4,539,891	-		GFF4548	0.43	+0.1
4,539,894	+		GFF4548	0.43	-1.0
4,539,894	+		GFF4548	0.43	+0.5
4,539,894	+		GFF4548	0.43	+0.8
4,539,894	+		GFF4548	0.43	-0.7
4,539,901	-		GFF4548	0.44	-0.4
4,539,902	-		GFF4548	0.44	-1.4
4,539,911	+		GFF4548	0.45	-0.1
4,539,922	+		GFF4548	0.47	-1.2
4,539,922	+		GFF4548	0.47	+0.1
4,539,929	+		GFF4548	0.47	-0.1
4,539,930	-		GFF4548	0.47	-1.2
4,539,930	-		GFF4548	0.47	+0.6
4,539,930	-		GFF4548	0.47	-2.3
4,539,957	+		GFF4548	0.50	-1.1
4,539,959	-		GFF4548	0.51	-0.5
4,539,959	-		GFF4548	0.51	-2.0
4,539,974	-		GFF4548	0.52	-1.8
4,539,989	+		GFF4548	0.54	+0.2
4,539,989	+		GFF4548	0.54	-0.2
4,539,997	-		GFF4548	0.55	-0.4
4,539,997	-		GFF4548	0.55	-0.4
4,540,029	+		GFF4548	0.58	+0.2
4,540,034	+		GFF4548	0.59	-1.4
4,540,037	-		GFF4548	0.59	-0.4
4,540,042	-		GFF4548	0.60	-0.9
4,540,053	+		GFF4548	0.61	-0.8
4,540,069	+		GFF4548	0.63	-2.5
4,540,078	-		GFF4548	0.64	+0.5
4,540,083	-		GFF4548	0.64	+0.3
4,540,092	-		GFF4548	0.65	-0.7
4,540,110	+		GFF4548	0.67	-2.0
4,540,116	-		GFF4548	0.68	-0.3
4,540,122	+		GFF4548	0.69	-1.9
4,540,145	+		GFF4548	0.71	+0.2
4,540,161	-		GFF4548	0.73	-1.3
4,540,185	-		GFF4548	0.76	-0.3
4,540,203	+		GFF4548	0.78	-1.8
4,540,223	+		GFF4548	0.80	+0.5
4,540,230	+		GFF4548	0.81	-1.4
4,540,231	-		GFF4548	0.81	-1.0
4,540,231	-		GFF4548	0.81	+0.1
4,540,240	+		GFF4548	0.82	-1.0
4,540,246	+		GFF4548	0.82	-0.2
4,540,248	-		GFF4548	0.83	+0.8
4,540,254	+		GFF4548	0.83	-1.4
4,540,262	-		GFF4548	0.84	-0.4
4,540,264	-		GFF4548	0.84	-0.6
4,540,264	-		GFF4548	0.84	-0.6
4,540,266	+		GFF4548	0.85	-0.1
4,540,271	+		GFF4548	0.85	-0.5
4,540,276	+		GFF4548	0.86	-1.0
4,540,284	-		GFF4548	0.87	-0.4
4,540,292	-		GFF4548	0.87	-1.2
4,540,316	+				-0.8
4,540,316	-				-0.9
4,540,336	-				+0.3
4,540,345	+				-0.3
4,540,351	+				-0.7
4,540,351	+				+0.6
4,540,353	-				-1.0
4,540,353	-				+0.6
4,540,364	+				-0.2
4,540,382	+				-0.3
4,540,382	+				-2.0
4,540,395	+				-1.1
4,540,395	-				+0.0
4,540,403	-				-1.2
4,540,403	-				-1.0
4,540,403	-				+0.5
4,540,403	-				+1.1
4,540,403	-				+1.5
4,540,408	-				+0.2
4,540,412	+				+0.8
4,540,412	+				-0.5
4,540,450	-				-0.5
4,540,470	-				-1.3
4,540,525	+				+0.6
4,540,537	+				-2.2
4,540,538	+				-0.3
4,540,538	+				+0.9
4,540,546	-		GFF4549	0.11	-1.2
4,540,546	-		GFF4549	0.11	+0.0
4,540,550	+		GFF4549	0.11	+1.0
4,540,560	+		GFF4549	0.13	+1.2
4,540,561	+		GFF4549	0.13	+0.2
4,540,569	-		GFF4549	0.14	-0.8
4,540,586	+		GFF4549	0.16	-1.0
4,540,586	+		GFF4549	0.16	+0.3
4,540,586	+		GFF4549	0.16	+1.7
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4,541,272	+				+0.4
4,541,272	+				-1.9
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