Strain Fitness in Sphingobium sp. HT1-2 around GFF4542

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,533,052	-				-0.0
4,533,086	-				+1.6
4,533,090	+				+0.1
4,533,090	+				+0.1
4,533,091	-				-0.7
4,533,091	-				+0.7
4,533,098	-				+1.0
4,533,098	-				-0.8
4,533,101	+				-0.2
4,533,106	+				-0.8
4,533,108	-				-1.0
4,533,108	-				-0.2
4,533,114	-				-1.6
4,533,117	-				-0.6
4,533,127	+				+0.1
4,533,138	+				-0.7
4,533,138	+				+0.2
4,533,171	+				-0.0
4,533,179	-		GFF4541	0.11	-1.7
4,533,181	-		GFF4541	0.11	+0.7
4,533,193	-		GFF4541	0.13	+0.5
4,533,195	+		GFF4541	0.13	-1.9
4,533,197	+		GFF4541	0.13	-0.1
4,533,205	-		GFF4541	0.15	+0.5
4,533,205	-		GFF4541	0.15	+0.5
4,533,205	-		GFF4541	0.15	-1.5
4,533,208	+		GFF4541	0.15	-0.2
4,533,215	+		GFF4541	0.16	-0.0
4,533,223	+		GFF4541	0.17	-0.0
4,533,231	-		GFF4541	0.18	-0.4
4,533,237	+		GFF4541	0.19	+1.0
4,533,237	+		GFF4541	0.19	-1.4
4,533,245	-		GFF4541	0.20	+0.6
4,533,245	-		GFF4541	0.20	-0.9
4,533,245	-		GFF4541	0.20	+1.0
4,533,245	-		GFF4541	0.20	+0.2
4,533,245	-		GFF4541	0.20	-1.9
4,533,252	+		GFF4541	0.21	+0.2
4,533,260	-		GFF4541	0.22	+0.3
4,533,274	+		GFF4541	0.24	-0.0
4,533,320	+		GFF4541	0.31	-1.0
4,533,320	+		GFF4541	0.31	+0.7
4,533,320	+		GFF4541	0.31	-1.2
4,533,320	+		GFF4541	0.31	+0.1
4,533,328	-		GFF4541	0.32	-0.8
4,533,328	-		GFF4541	0.32	+0.0
4,533,328	-		GFF4541	0.32	-0.0
4,533,339	-		GFF4541	0.34	-1.2
4,533,355	-		GFF4541	0.36	-1.0
4,533,387	+		GFF4541	0.41	-1.5
4,533,395	-		GFF4541	0.42	+0.3
4,533,398	+		GFF4541	0.42	-0.8
4,533,406	-		GFF4541	0.43	+0.1
4,533,406	-		GFF4541	0.43	+0.3
4,533,421	+		GFF4541	0.45	-1.1
4,533,421	-		GFF4541	0.45	+0.2
4,533,442	-		GFF4541	0.48	+0.5
4,533,442	-		GFF4541	0.48	+1.1
4,533,443	-		GFF4541	0.49	+1.0
4,533,444	-		GFF4541	0.49	+0.2
4,533,488	+		GFF4541	0.55	-1.5
4,533,490	-		GFF4541	0.55	-1.0
4,533,490	-		GFF4541	0.55	+1.3
4,533,493	+		GFF4541	0.56	-0.4
4,533,493	+		GFF4541	0.56	-0.8
4,533,496	-		GFF4541	0.56	-0.8
4,533,496	-		GFF4541	0.56	+1.1
4,533,501	+		GFF4541	0.57	+1.1
4,533,509	-		GFF4541	0.58	+0.6
4,533,530	+		GFF4541	0.61	-1.7
4,533,530	+		GFF4541	0.61	+0.9
4,533,530	+		GFF4541	0.61	+0.3
4,533,530	+		GFF4541	0.61	+1.1
4,533,530	+		GFF4541	0.61	-0.1
4,533,530	+		GFF4541	0.61	-0.4
4,533,532	-		GFF4541	0.61	+1.6
4,533,538	-		GFF4541	0.62	-0.5
4,533,538	-		GFF4541	0.62	+0.9
4,533,538	-		GFF4541	0.62	+0.9
4,533,538	-		GFF4541	0.62	-1.2
4,533,560	-		GFF4541	0.65	-0.0
4,533,586	+		GFF4541	0.69	+2.1
4,533,625	-		GFF4541	0.75	+0.8
4,533,625	-		GFF4541	0.75	+0.6
4,533,629	+		GFF4541	0.75	-0.6
4,533,629	+		GFF4541	0.75	+0.5
4,533,635	+		GFF4541	0.76	-1.1
4,533,643	-		GFF4541	0.77	+0.5
4,533,693	-		GFF4541	0.84	+0.5
4,533,695	+		GFF4541	0.85	+0.3
4,533,725	+		GFF4541	0.89	+0.6
4,533,725	+		GFF4541	0.89	+0.8
4,533,730	+		GFF4541	0.90	-1.6
4,533,732	-				-0.6
4,533,733	-				+0.1
4,533,733	-				-0.5
4,533,733	-				+0.3
4,533,733	-				+0.4
4,533,735	+				+0.2
4,533,751	+				+1.0
4,533,774	-				+0.1
4,533,781	+				+1.2
4,533,800	+				-0.8
4,533,822	+				+0.0
4,533,833	+				+0.5
4,533,833	+				+0.2
4,533,840	+				-1.5
4,533,841	-				-0.8
4,534,752	-				-1.4
4,534,765	-				-0.6
4,534,826	+				+0.1
4,534,834	-				+0.0
4,534,838	-				-0.8
4,534,844	+				+0.8
4,534,857	-				-1.1
4,534,860	+				-0.3
4,534,874	+				+0.3
4,534,881	+				-0.4
4,534,881	+				+0.5
4,534,881	+				-0.3
4,534,881	+				-0.6
4,534,881	+				+0.8
4,534,884	-				+0.3
4,534,884	-				+0.9
4,534,886	+				-0.0
4,534,889	-				-0.9
4,534,889	-				-0.2
4,534,889	-				-1.3
4,534,889	-				+1.4
4,534,889	-				-0.4
4,534,891	+				+0.1
4,534,899	-				+0.8
4,534,899	-				-0.1
4,534,913	+				+1.4
4,534,913	+				-0.8
4,534,913	+				-2.0
4,534,913	+				-0.7
4,534,918	+				+0.4
4,534,918	+				-0.1
4,534,918	+				-1.0
4,534,921	-				+0.0
4,534,926	-				+0.2
4,534,926	-				+0.7
4,534,926	-				+0.2
4,534,926	-				+0.5
4,534,931	-				-0.7
4,534,935	-				-0.7
4,534,980	+				-0.5
4,534,980	+				-0.3
4,534,980	+				-1.0
4,534,988	+				-0.7
4,534,996	-				-0.2
4,534,996	-				-0.6
4,534,996	-				-0.8
4,534,996	-				-0.5
4,535,025	+				-1.6
4,535,025	+				-0.9
4,535,025	+				+0.1
4,535,025	+				-0.1
4,535,025	+				-0.3
4,535,025	+				-0.1
4,535,025	+				+0.2
4,535,025	+				+1.0
4,535,025	+				-0.4
4,535,030	+				+0.5
4,535,030	+				+0.5
4,535,030	+				+1.5
4,535,030	+				-2.9
4,535,030	+				-0.1
4,535,030	+				-1.2
4,535,030	+				-0.6
4,535,030	+				-1.5
4,535,030	+				+0.1
4,535,030	+				-0.4
4,535,030	+				+0.5
4,535,030	+				-1.1
4,535,030	+				-2.0
4,535,030	+				+0.8
4,535,030	+				-1.0
4,535,032	+				+1.3
4,535,032	+				+1.0
4,535,032	+				-0.2
4,535,032	+				-0.4
4,535,033	-				-1.8
4,535,033	-				+0.2
4,535,033	-				-1.9
4,535,033	-				+0.6
4,535,033	-				-0.9
4,535,033	-				-2.0
4,535,033	-				+0.1
4,535,037	+				-0.7
4,535,038	-				-0.4
4,535,038	-				-0.1
4,535,038	-				+1.0
4,535,038	-				-1.2
4,535,038	-				-0.7
4,535,038	-				+1.5
4,535,038	-				-0.9
4,535,038	-				-0.2
4,535,038	-				+1.1
4,535,038	-				+0.9
4,535,038	-				-0.0
4,535,038	-				-2.4
4,535,039	-				+0.5
4,535,045	-				-1.7
4,535,045	-				-1.6
4,535,045	-				-2.1
4,535,045	-				+1.1
4,535,049	+				+0.3
4,535,058	-				-0.6
4,535,058	-				-2.7
4,535,063	-				-1.0
4,535,076	+				+0.5
4,535,076	-				-0.6
4,535,076	-				+1.1
4,535,079	-				-0.4
4,535,084	-				+0.9
4,535,097	-		GFF4543	0.10	-1.2
4,535,111	+		GFF4543	0.11	+0.5
4,535,113	-		GFF4543	0.11	-0.5
4,535,113	-		GFF4543	0.11	-0.0
4,535,123	-		GFF4543	0.11	-0.9
4,535,141	+		GFF4543	0.12	+1.2
4,535,151	+		GFF4543	0.12	-0.5
4,535,151	+		GFF4543	0.12	-1.5
4,535,151	+		GFF4543	0.12	+0.0
4,535,151	+		GFF4543	0.12	+0.4
4,535,151	+		GFF4543	0.12	-0.0
4,535,159	-		GFF4543	0.13	+1.1
4,535,159	-		GFF4543	0.13	+0.0
4,535,159	-		GFF4543	0.13	-0.0
4,535,159	-		GFF4543	0.13	-0.0
4,535,159	-		GFF4543	0.13	+0.6
4,535,159	-		GFF4543	0.13	-0.0
4,535,159	-		GFF4543	0.13	-0.1
4,535,159	-		GFF4543	0.13	-0.3
4,535,159	-		GFF4543	0.13	-1.5
4,535,159	-		GFF4543	0.13	-1.9
4,535,174	-		GFF4543	0.13	-0.4
4,535,176	+		GFF4543	0.13	-1.1
4,535,199	+		GFF4543	0.14	-1.7
4,535,199	+		GFF4543	0.14	-1.2
4,535,199	+		GFF4543	0.14	-0.6
4,535,202	-		GFF4543	0.14	-2.1
4,535,207	-		GFF4543	0.14	-1.0
4,535,207	-		GFF4543	0.14	-0.4
4,535,207	-		GFF4543	0.14	+1.0
4,535,220	-		GFF4543	0.15	-0.0
4,535,222	+		GFF4543	0.15	-1.5
4,535,222	+		GFF4543	0.15	-2.2
4,535,222	+		GFF4543	0.15	-1.2
4,535,222	+		GFF4543	0.15	-1.8
4,535,222	+		GFF4543	0.15	-1.3
4,535,224	+		GFF4543	0.15	+0.4
4,535,230	-		GFF4543	0.15	-1.6
4,535,230	-		GFF4543	0.15	-0.0
4,535,230	-		GFF4543	0.15	+0.6
4,535,230	-		GFF4543	0.15	+0.3
4,535,244	-		GFF4543	0.16	-0.9
4,535,282	+		GFF4543	0.18	-1.2
4,535,282	+		GFF4543	0.18	+0.1
4,535,290	-		GFF4543	0.18	-0.8
4,535,364	+		GFF4543	0.21	+1.0
4,535,396	-		GFF4543	0.22	+0.1
4,535,422	+		GFF4543	0.23	+1.5
4,535,427	+		GFF4543	0.23	-0.2
4,535,427	+		GFF4543	0.23	-1.9
4,535,451	+		GFF4543	0.24	-1.8
4,535,451	+		GFF4543	0.24	+0.3
4,535,451	+		GFF4543	0.24	-1.5
4,535,451	+		GFF4543	0.24	-0.9
4,535,459	-		GFF4543	0.25	+1.4
4,535,459	-		GFF4543	0.25	-1.3
4,535,461	+		GFF4543	0.25	+0.5
4,535,461	+		GFF4543	0.25	-0.4
4,535,461	+		GFF4543	0.25	-2.0
4,535,461	+		GFF4543	0.25	-1.3
4,535,461	+		GFF4543	0.25	-0.0
4,535,469	-		GFF4543	0.25	+0.2
4,535,469	-		GFF4543	0.25	-1.2
4,535,469	-		GFF4543	0.25	-1.7
4,535,469	-		GFF4543	0.25	+0.3
4,535,478	+		GFF4543	0.25	-2.5
4,535,484	-		GFF4543	0.26	-1.6
4,535,486	-		GFF4543	0.26	-1.9
4,535,497	+		GFF4543	0.26	+0.5
4,535,517	-		GFF4543	0.27	-0.2
4,535,517	-		GFF4543	0.27	-0.8
4,535,518	+		GFF4543	0.27	-0.4
4,535,525	+		GFF4543	0.27	-1.0
4,535,525	+		GFF4543	0.27	-0.7
4,535,525	-		GFF4543	0.27	-3.7
4,535,526	+		GFF4543	0.27	-2.3
4,535,526	+		GFF4543	0.27	-1.3
4,535,526	-		GFF4543	0.27	+1.6
4,535,533	-		GFF4543	0.28	-0.9
4,535,533	-		GFF4543	0.28	-0.9
4,535,534	-		GFF4543	0.28	+0.0
4,535,602	+		GFF4543	0.31	-0.2
4,535,609	+		GFF4543	0.31	-0.5
4,535,627	+		GFF4543	0.32	-0.0
4,535,632	+		GFF4543	0.32	-0.4
4,535,633	-		GFF4543	0.32	-1.1
4,535,668	-		GFF4543	0.33	-1.0
4,535,669	+		GFF4543	0.33	-0.5
4,535,676	-		GFF4543	0.34	+0.5
4,535,687	+		GFF4543	0.34	-0.6
4,535,687	+		GFF4543	0.34	-0.0
4,535,687	+		GFF4543	0.34	-0.7
4,535,692	+		GFF4543	0.34	-0.2
4,535,695	-		GFF4543	0.34	+0.6
4,535,695	-		GFF4543	0.34	+1.0
4,535,697	+		GFF4543	0.34	-0.4
4,535,700	-		GFF4543	0.35	+0.4
4,535,700	-		GFF4543	0.35	-1.0
4,535,700	-		GFF4543	0.35	+0.9
4,535,705	-		GFF4543	0.35	-1.6
4,535,705	-		GFF4543	0.35	+0.5
4,535,713	-		GFF4543	0.35	-1.2
4,535,729	+		GFF4543	0.36	-1.1
4,535,736	-		GFF4543	0.36	-1.1
4,535,736	-		GFF4543	0.36	-0.1
4,535,743	-		GFF4543	0.36	-1.9
4,535,743	-		GFF4543	0.36	+0.2
4,535,748	+		GFF4543	0.36	-0.3
4,535,748	+		GFF4543	0.36	+0.4
4,535,748	+		GFF4543	0.36	-0.6