Strain Fitness in Sphingobium sp. HT1-2 around GFF4485

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,478,035	-		GFF4484	0.52	+0.3
4,478,037	+		GFF4484	0.52	+0.6
4,478,057	+		GFF4484	0.53	-0.2
4,478,064	-		GFF4484	0.54	+1.0
4,478,073	+		GFF4484	0.54	-1.0
4,478,081	-		GFF4484	0.55	-0.5
4,478,124	-		GFF4484	0.57	+1.1
4,478,128	+		GFF4484	0.57	-0.2
4,478,133	+		GFF4484	0.57	+0.8
4,478,153	-		GFF4484	0.58	-0.0
4,478,153	-		GFF4484	0.58	+0.3
4,478,158	-		GFF4484	0.59	+0.7
4,478,160	+		GFF4484	0.59	+0.0
4,478,163	+		GFF4484	0.59	+0.3
4,478,165	+		GFF4484	0.59	-0.0
4,478,165	+		GFF4484	0.59	-1.0
4,478,173	-		GFF4484	0.59	+0.5
4,478,173	-		GFF4484	0.59	+0.1
4,478,175	+		GFF4484	0.60	+1.0
4,478,181	-		GFF4484	0.60	+0.5
4,478,183	-		GFF4484	0.60	+1.0
4,478,203	+		GFF4484	0.61	-1.5
4,478,203	+		GFF4484	0.61	+1.4
4,478,203	+		GFF4484	0.61	+1.0
4,478,203	+		GFF4484	0.61	-0.5
4,478,209	+		GFF4484	0.61	+0.2
4,478,211	-		GFF4484	0.61	+0.9
4,478,211	-		GFF4484	0.61	+0.9
4,478,211	-		GFF4484	0.61	+1.0
4,478,211	-		GFF4484	0.61	-2.1
4,478,211	-		GFF4484	0.61	+1.4
4,478,211	-		GFF4484	0.61	+0.1
4,478,211	-		GFF4484	0.61	+0.3
4,478,211	-		GFF4484	0.61	-0.0
4,478,212	-		GFF4484	0.62	-0.4
4,478,217	-		GFF4484	0.62	+0.9
4,478,217	-		GFF4484	0.62	+1.1
4,478,223	+		GFF4484	0.62	+0.6
4,478,249	-		GFF4484	0.64	+1.0
4,478,265	-		GFF4484	0.64	+0.3
4,478,275	-		GFF4484	0.65	-0.1
4,478,275	-		GFF4484	0.65	+0.6
4,478,281	+		GFF4484	0.65	+1.1
4,478,289	-		GFF4484	0.66	+0.7
4,478,290	-		GFF4484	0.66	+0.4
4,478,291	+		GFF4484	0.66	+0.7
4,478,321	-		GFF4484	0.67	+2.4
4,478,337	+		GFF4484	0.68	-0.3
4,478,350	-		GFF4484	0.69	+0.7
4,478,350	-		GFF4484	0.69	+2.2
4,478,416	+		GFF4484	0.72	+0.6
4,478,424	-		GFF4484	0.73	-0.8
4,478,424	-		GFF4484	0.73	+0.3
4,478,436	+		GFF4484	0.73	+1.4
4,478,439	-		GFF4484	0.74	+1.3
4,478,468	-		GFF4484	0.75	+0.3
4,478,470	+		GFF4484	0.75	-0.6
4,478,470	+		GFF4484	0.75	-1.0
4,478,478	-		GFF4484	0.76	+0.8
4,478,480	+		GFF4484	0.76	+1.0
4,478,484	-		GFF4484	0.76	-0.1
4,478,493	+		GFF4484	0.76	+0.6
4,478,519	+		GFF4484	0.78	-1.1
4,478,519	+		GFF4484	0.78	+0.2
4,478,527	-		GFF4484	0.78	+0.7
4,478,527	-		GFF4484	0.78	-1.1
4,478,527	-		GFF4484	0.78	-1.3
4,478,534	+		GFF4484	0.79	-0.5
4,478,542	+		GFF4484	0.79	-1.3
4,478,611	-		GFF4484	0.83	-1.3
4,478,642	-		GFF4484	0.84	+1.2
4,478,681	+		GFF4484	0.86	+0.2
4,478,701	+		GFF4484	0.87	+0.6
4,478,701	+		GFF4484	0.87	-0.4
4,478,704	-		GFF4484	0.88	+0.7
4,478,707	-		GFF4484	0.88	+1.2
4,478,720	+		GFF4484	0.88	-0.0
4,478,722	-		GFF4484	0.88	-0.3
4,478,728	-		GFF4484	0.89	-0.3
4,478,760	-				-0.6
4,478,843	+				+0.6
4,478,872	-				-0.2
4,478,890	+				+0.1
4,478,895	+				-0.3
4,478,895	+				+1.0
4,478,898	-				+0.3
4,478,898	-				-0.5
4,478,900	+				-0.6
4,478,903	-				+0.4
4,478,903	-				+0.7
4,478,903	-				+1.5
4,478,927	+				-2.2
4,478,967	+				+0.8
4,478,967	+				-0.3
4,478,967	-				-0.0
4,478,967	-				-0.2
4,478,972	-				-1.7
4,478,994	+				-1.1
4,479,001	+				+0.2
4,479,008	-				-1.1
4,479,008	-				-1.1
4,479,008	-				-1.3
4,479,009	-				-2.0
4,479,009	-				+0.3
4,479,030	+				-0.7
4,479,032	+				-0.1
4,479,032	+				-0.1
4,479,032	+				-0.4
4,479,038	-				-0.3
4,479,040	-				+0.9
4,479,040	-				+0.4
4,479,053	+				-2.5
4,479,076	+				-0.3
4,479,085	+				-0.3
4,479,095	+		GFF4485	0.11	-0.0
4,479,096	-		GFF4485	0.11	+0.6
4,479,096	-		GFF4485	0.11	-1.7
4,479,114	-		GFF4485	0.14	-1.8
4,479,129	+		GFF4485	0.17	+0.7
4,479,129	+		GFF4485	0.17	+0.5
4,479,131	+		GFF4485	0.17	+1.0
4,479,136	+		GFF4485	0.18	-0.6
4,479,137	-		GFF4485	0.18	-0.1
4,479,152	+		GFF4485	0.21	+1.0
4,479,152	+		GFF4485	0.21	+0.3
4,479,152	+		GFF4485	0.21	+0.1
4,479,152	+		GFF4485	0.21	+0.1
4,479,152	+		GFF4485	0.21	+0.1
4,479,152	+		GFF4485	0.21	-0.5
4,479,152	+		GFF4485	0.21	-2.3
4,479,160	+		GFF4485	0.22	+0.9
4,479,160	-		GFF4485	0.22	+1.3
4,479,160	-		GFF4485	0.22	+0.2
4,479,160	-		GFF4485	0.22	-0.0
4,479,160	-		GFF4485	0.22	-0.5
4,479,165	+		GFF4485	0.23	+0.3
4,479,168	-		GFF4485	0.23	-0.6
4,479,175	-		GFF4485	0.25	-1.8
4,479,179	+		GFF4485	0.25	+1.0
4,479,222	-		GFF4485	0.33	-1.5
4,479,236	+		GFF4485	0.35	+0.9
4,479,236	+		GFF4485	0.35	-0.3
4,479,236	+		GFF4485	0.35	+0.2
4,479,244	-		GFF4485	0.37	+0.7
4,479,247	+		GFF4485	0.37	+0.4
4,479,270	-		GFF4485	0.41	+0.9
4,479,308	-		GFF4485	0.48	+0.2
4,479,318	+		GFF4485	0.50	-0.8
4,479,324	+		GFF4485	0.51	-0.3
4,479,324	-		GFF4485	0.51	-0.2
4,479,324	-		GFF4485	0.51	+0.1
4,479,326	-		GFF4485	0.51	+0.5
4,479,382	-		GFF4485	0.61	-0.1
4,479,418	+		GFF4485	0.67	+0.9
4,479,429	+		GFF4485	0.69	-0.3
4,479,434	+		GFF4485	0.70	-2.2
4,479,434	+		GFF4485	0.70	-2.3
4,479,442	-		GFF4485	0.71	-0.5
4,479,442	-		GFF4485	0.71	+1.3
4,479,442	-		GFF4485	0.71	+2.8
4,479,442	-		GFF4485	0.71	-0.7
4,479,478	-		GFF4485	0.77	+0.3
4,479,482	-		GFF4485	0.78	+0.4
4,479,489	-		GFF4485	0.79	+1.0
4,479,506	+		GFF4485	0.82	+1.8
4,479,514	-		GFF4485	0.84	+0.7
4,479,514	-		GFF4485	0.84	+0.6
4,479,514	-		GFF4485	0.84	+0.9
4,479,514	-		GFF4485	0.84	+0.9
4,479,514	-		GFF4485	0.84	+1.2
4,479,529	+		GFF4485	0.86	+2.0
4,479,577	-				+0.2
4,479,581	+				+0.1
4,479,581	+				-0.4
4,479,594	+				-0.8
4,479,594	+				-0.2
4,479,594	+				+0.3
4,479,594	-				+0.1
4,479,596	-				-0.1
4,479,602	-				+0.3
4,479,602	-				-0.3
4,479,602	-				+0.7
4,479,602	-				+0.1
4,479,602	-				-1.1
4,479,613	+				-1.0
4,479,621	-				-0.1
4,479,649	+		GFF4486	0.11	+0.8
4,479,649	+		GFF4486	0.11	+1.3
4,479,649	+		GFF4486	0.11	+0.7
4,479,649	+		GFF4486	0.11	-0.1
4,479,649	+		GFF4486	0.11	+1.3
4,479,649	+		GFF4486	0.11	-0.2
4,479,649	+		GFF4486	0.11	+0.4
4,479,649	+		GFF4486	0.11	-0.1
4,479,649	+		GFF4486	0.11	-0.6
4,479,649	+		GFF4486	0.11	-0.6
4,479,654	+		GFF4486	0.12	+0.5
4,479,657	-		GFF4486	0.12	+1.0
4,479,657	-		GFF4486	0.12	-0.6
4,479,657	-		GFF4486	0.12	-0.1
4,479,657	-		GFF4486	0.12	-0.4
4,479,657	-		GFF4486	0.12	-0.1
4,479,657	-		GFF4486	0.12	+1.2
4,479,657	-		GFF4486	0.12	+0.6
4,479,657	-		GFF4486	0.12	-1.5
4,479,657	-		GFF4486	0.12	-1.4
4,479,657	-		GFF4486	0.12	+1.4
4,479,657	-		GFF4486	0.12	+0.8
4,479,657	-		GFF4486	0.12	-0.1
4,479,657	-		GFF4486	0.12	-0.3
4,479,657	-		GFF4486	0.12	-0.0
4,479,657	-		GFF4486	0.12	-0.0
4,479,657	-		GFF4486	0.12	+0.1
4,479,659	+		GFF4486	0.13	-1.3
4,479,659	+		GFF4486	0.13	+0.2
4,479,662	-		GFF4486	0.13	-0.2
4,479,667	-		GFF4486	0.15	-1.6
4,479,680	-		GFF4486	0.18	-0.3
4,479,685	+		GFF4486	0.19	+0.2
4,479,693	-		GFF4486	0.21	-1.8
4,479,695	+		GFF4486	0.21	-0.5
4,479,734	-		GFF4486	0.30	+0.4
4,479,758	+		GFF4486	0.35	+0.9
4,479,759	+		GFF4486	0.36	+1.0
4,479,764	+		GFF4486	0.37	+1.3
4,479,772	-		GFF4486	0.39	-0.7
4,479,808	-		GFF4486	0.47	-0.6
4,479,829	-		GFF4486	0.52	-1.7
4,479,829	-		GFF4486	0.52	+0.7
4,479,850	+		GFF4486	0.56	-1.3
4,479,850	+		GFF4486	0.56	+0.1
4,479,850	+		GFF4486	0.56	-0.3
4,479,858	-		GFF4486	0.58	+0.6
4,479,877	-		GFF4486	0.63	+0.3
4,479,882	-		GFF4486	0.64	-1.9
4,479,912	+		GFF4486	0.71	-1.1
4,479,912	+		GFF4486	0.71	-1.7
4,479,912	+		GFF4486	0.71	-0.3
4,479,912	+		GFF4486	0.71	+0.3
4,479,920	-		GFF4486	0.72	+0.2
4,479,920	-		GFF4486	0.72	+1.2
4,479,920	-		GFF4486	0.72	+0.8
4,479,920	-		GFF4486	0.72	+0.5
4,479,920	-		GFF4486	0.72	-0.2
4,479,920	-		GFF4486	0.72	-0.2
4,479,920	-		GFF4486	0.72	+1.3
4,479,943	+		GFF4486	0.78	+0.4
4,479,943	+		GFF4486	0.78	-0.2
4,479,943	+		GFF4486	0.78	+0.6
4,479,943	+		GFF4486	0.78	+0.4
4,479,943	+		GFF4486	0.78	+0.5
4,479,943	+		GFF4486	0.78	+0.8
4,479,943	+		GFF4486	0.78	-0.8
4,479,943	+		GFF4486	0.78	+0.5
4,479,943	+		GFF4486	0.78	-0.3
4,479,943	+		GFF4486	0.78	+1.2
4,479,943	+		GFF4486	0.78	-1.9
4,479,943	+		GFF4486	0.78	+0.7
4,479,951	-		GFF4486	0.79	+0.7
4,479,951	-		GFF4486	0.79	-1.4
4,479,951	-		GFF4486	0.79	+0.5
4,479,951	-		GFF4486	0.79	+0.2
4,479,951	-		GFF4486	0.79	-0.6
4,479,951	-		GFF4486	0.79	-0.2
4,479,951	-		GFF4486	0.79	-0.1
4,479,980	-		GFF4486	0.86	-0.6
4,480,003	-				+0.6
4,480,010	-				+0.7
4,480,018	+				-0.6
4,480,047	+				-0.3
4,480,104	+		GFF4487	0.24	+0.6
4,480,112	-		GFF4487	0.27	+1.0
4,480,123	+		GFF4487	0.30	-2.5
4,480,123	+		GFF4487	0.30	+0.6
4,480,123	+		GFF4487	0.30	+0.3
4,480,123	+		GFF4487	0.30	+1.5
4,480,130	+		GFF4487	0.33	-1.9
4,480,131	-		GFF4487	0.33	-0.5
4,480,131	-		GFF4487	0.33	-0.2
4,480,143	+		GFF4487	0.38	+1.7
4,480,145	+		GFF4487	0.38	-1.2
4,480,148	+		GFF4487	0.39	+0.3
4,480,156	-		GFF4487	0.42	+0.3
4,480,156	-		GFF4487	0.42	+0.1
4,480,175	-		GFF4487	0.49	-0.0
4,480,200	+		GFF4487	0.58	-0.4
4,480,208	-		GFF4487	0.61	-0.7
4,480,227	+		GFF4487	0.67	+0.3
4,480,227	+		GFF4487	0.67	+0.0
4,480,227	+		GFF4487	0.67	-0.9
4,480,237	-		GFF4487	0.71	+0.6
4,480,243	+		GFF4487	0.73	-0.1
4,480,243	+		GFF4487	0.73	+1.1
4,480,247	-		GFF4487	0.74	+1.0
4,480,252	-		GFF4487	0.76	+0.9
4,480,252	-		GFF4487	0.76	+0.1
4,480,258	+		GFF4487	0.78	-0.7
4,480,261	-		GFF4487	0.79	-1.1
4,480,301	+				+0.9
4,480,309	-				-2.1
4,480,309	-				-1.1
4,480,309	-				-0.2
4,480,314	-				-0.6
4,480,314	-				-0.1
4,480,314	-				-0.6
4,480,325	+				+0.8
4,480,325	+				+1.5
4,480,333	-				+0.7
4,480,362	-				+0.7
4,480,365	+				+0.4
4,480,382	+				+1.7
4,480,382	+				+0.9
4,480,382	+				-1.4
4,480,382	+				-0.7
4,480,382	+				+0.4
4,480,382	+				-0.3
4,480,382	+				+0.1
4,480,382	+				-0.1
4,480,390	-				-1.4
4,480,390	-				-0.2
4,480,390	-				-2.3
4,480,395	+				+1.7
4,480,402	+				+0.7
4,480,403	-				+0.6
4,480,410	-				-1.2
4,480,410	-				-1.5
4,480,414	-				+1.3
4,480,416	+				-0.8
4,480,416	+				-1.5
4,480,424	-				-0.3
4,480,424	-				+0.1
4,480,424	-				-0.4
4,480,429	-				-0.3
4,480,429	-				-1.5
4,480,429	-				+0.5
4,480,429	-				-1.1
4,480,472	-				+0.5
4,480,487	-				+1.4
4,480,505	+				+0.9
4,480,507	-				+0.5
4,480,520	+		GFF4488	0.11	+0.7
4,480,520	+		GFF4488	0.11	-0.4
4,480,528	-		GFF4488	0.12	+1.1
4,480,528	-		GFF4488	0.12	-1.0
4,480,528	-		GFF4488	0.12	-0.8
4,480,528	-		GFF4488	0.12	-0.5
4,480,528	-		GFF4488	0.12	-1.6
4,480,528	-		GFF4488	0.12	-1.0
4,480,548	-		GFF4488	0.16	-0.5
4,480,561	-		GFF4488	0.18	-0.2
4,480,572	-		GFF4488	0.20	+0.7
4,480,584	+		GFF4488	0.22	+0.4
4,480,584	+		GFF4488	0.22	+0.1
4,480,584	+		GFF4488	0.22	+0.4
4,480,587	-		GFF4488	0.22	-0.2
4,480,592	-		GFF4488	0.23	+1.6
4,480,602	+		GFF4488	0.25	+0.5